Wall clock time and date at job start Tue Mar 31 2020 03:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00260 * 2 1 4 4 C 1.50695 * 109.47388 * 89.99680 * 3 2 1 5 5 H 1.08005 * 119.99755 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99863 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00647 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99846 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.46951 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47160 * 120.00156 * 8 6 4 11 11 H 1.48501 * 109.47266 * 240.00460 * 8 6 4 12 12 C 1.34788 * 119.99789 * 179.97438 * 2 1 3 13 13 O 1.21551 * 119.99585 * 186.99131 * 12 2 1 14 14 C 1.47848 * 119.99811 * 6.99098 * 12 2 1 15 15 C 1.39588 * 120.14264 * 20.28909 * 14 12 2 16 16 C 1.37938 * 119.84948 * 179.78748 * 15 14 12 17 17 C 1.38379 * 120.14527 * 0.48843 * 16 15 14 18 18 C 1.38337 * 120.29135 * 359.74329 * 17 16 15 19 19 S 1.76199 * 119.92653 * 180.02562 * 18 17 16 20 20 C 1.81398 * 104.44985 * 270.01938 * 19 18 17 21 21 O 1.42102 * 104.28142 * 26.09284 * 19 18 17 22 22 O 1.42099 * 104.27697 * 153.94818 * 19 18 17 23 23 C 1.37977 * 120.14715 * 0.02562 * 18 17 16 24 24 H 1.09000 * 109.47392 * 85.96973 * 1 2 3 25 25 H 1.09003 * 109.47473 * 205.97027 * 1 2 3 26 26 H 1.09000 * 109.47039 * 325.97052 * 1 2 3 27 27 H 1.09000 * 109.46917 * 329.99487 * 3 2 1 28 28 H 1.08997 * 109.47005 * 210.00323 * 3 2 1 29 29 H 0.97000 * 120.00378 * 179.97438 * 7 6 4 30 30 H 1.08002 * 120.08015 * 359.97438 * 15 14 12 31 31 H 1.08003 * 119.92912 * 180.21120 * 16 15 14 32 32 H 1.07998 * 119.85685 * 179.76454 * 17 16 15 33 33 H 1.09003 * 109.46920 * 60.00016 * 20 19 18 34 34 H 1.09002 * 109.47487 * 180.02562 * 20 19 18 35 35 H 1.09005 * 109.47204 * 300.00010 * 20 19 18 36 36 H 1.07998 * 120.07894 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 1 2.0980 1.0958 2.2417 6 6 3.1269 2.8774 1.6726 7 7 3.5543 3.6175 0.6731 8 14 3.4389 3.4164 3.4338 9 1 2.8617 2.4159 4.3672 10 1 4.9014 3.5241 3.6668 11 1 2.8018 4.7373 3.6674 12 6 2.1389 -1.1673 0.0005 13 8 3.3476 -1.1711 0.1287 14 6 1.4078 -2.4430 -0.1548 15 6 0.1284 -2.4542 -0.7130 16 6 -0.5464 -3.6483 -0.8591 17 6 0.0380 -4.8321 -0.4443 18 6 1.3037 -4.8273 0.1141 19 16 2.0390 -6.3403 0.6383 20 6 1.5227 -6.5191 2.3680 21 8 1.4198 -7.3301 -0.1718 22 8 3.4367 -6.0970 0.5577 23 6 1.9915 -3.6403 0.2615 24 1 -0.3634 0.0722 -1.0251 25 1 -0.3634 -0.9239 0.4500 26 1 -0.3633 0.8517 0.5751 27 1 1.6085 2.0283 -0.5139 28 1 3.1499 1.1383 -0.5139 29 1 4.0312 4.4434 0.8503 30 1 -0.3308 -1.5305 -1.0326 31 1 -1.5350 -3.6589 -1.2940 32 1 -0.4961 -5.7639 -0.5574 33 1 0.4345 -6.5558 2.4204 34 1 1.9379 -7.4398 2.7779 35 1 1.8858 -5.6687 2.9453 36 1 2.9797 -3.6379 0.6973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833636.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:36 Heat of formation + Delta-G solvation = -78.726481 kcal Electronic energy + Delta-G solvation = -21553.900859 eV Core-core repulsion = 18130.650214 eV Total energy + Delta-G solvation = -3423.250645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.45564 -39.32450 -38.14961 -36.99699 -36.87066 -34.90605 -32.74064 -32.22508 -30.28494 -29.66246 -27.85956 -25.76164 -24.24889 -23.67116 -21.16741 -19.83422 -18.82829 -18.70474 -17.75795 -17.30052 -17.16236 -16.89108 -16.83190 -16.34505 -16.10601 -15.51785 -15.01046 -14.56972 -14.53098 -14.18708 -13.98366 -13.93173 -13.75724 -13.72790 -13.37741 -13.15387 -13.09740 -12.90238 -12.74675 -12.65847 -12.34643 -12.23709 -12.04109 -11.73485 -11.59660 -10.84532 -10.67730 -10.35645 -10.14639 -9.52430 -8.25755 -6.40475 -0.87543 -0.36035 -0.04566 1.34597 1.37812 1.49088 1.71966 1.91088 2.17073 2.38966 2.55053 3.02002 3.04300 3.16984 3.50458 3.78076 3.89883 4.06328 4.11945 4.14372 4.32020 4.40698 4.50109 4.54611 4.77063 4.86723 4.89607 4.97314 4.99685 5.12021 5.18567 5.19654 5.49373 5.70560 5.77834 6.01003 6.59153 6.68462 7.19552 7.34523 8.81840 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.022980 B = 0.003804 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.139920 B = 7358.137787 C = 7972.874409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.600 5.600 3 C 0.259 3.741 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.532 3.468 13 O -0.594 6.594 14 C -0.165 4.165 15 C -0.057 4.057 16 C -0.133 4.133 17 C -0.004 4.004 18 C -0.670 4.670 19 S 2.508 3.492 20 C -0.623 4.623 21 O -0.962 6.962 22 O -0.987 6.987 23 C 0.006 3.994 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.071 0.929 27 H 0.034 0.966 28 H -0.004 1.004 29 H 0.268 0.732 30 H 0.178 0.822 31 H 0.185 0.815 32 H 0.178 0.822 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.142 0.858 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.779 -19.809 1.641 25.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.330 5.330 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.070 0.930 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.793 3.207 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.191 1.191 12 C 0.322 3.678 13 O -0.476 6.476 14 C -0.169 4.169 15 C -0.074 4.074 16 C -0.151 4.151 17 C -0.023 4.023 18 C -0.755 4.755 19 S 2.690 3.310 20 C -0.777 4.777 21 O -0.960 6.960 22 O -0.985 6.985 23 C -0.014 4.014 24 H 0.107 0.893 25 H 0.120 0.880 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.014 0.986 29 H 0.077 0.923 30 H 0.195 0.805 31 H 0.202 0.798 32 H 0.196 0.804 33 H 0.183 0.817 34 H 0.175 0.825 35 H 0.160 0.840 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.580 -20.114 1.119 24.867 hybrid contribution 0.627 1.581 0.957 1.952 sum -13.953 -18.533 2.077 23.291 Atomic orbital electron populations 1.22659 0.77929 1.04535 1.02897 1.48054 1.08532 1.06005 1.70377 1.18849 0.91092 0.79958 0.96351 1.21690 1.37084 1.06517 0.92906 0.92996 1.25856 0.94762 0.96369 1.02086 1.70044 1.38836 1.14845 1.33013 0.85348 0.77875 0.78461 0.78986 1.19194 1.20857 1.19093 1.18985 0.86917 0.84869 0.77072 1.90728 1.16766 1.87814 1.52308 1.20058 0.97567 0.92304 1.07015 1.22922 0.91081 1.02245 0.91195 1.21794 1.02450 0.90555 1.00344 1.21647 0.90970 1.01035 0.88653 1.30681 1.08083 1.18053 1.18667 1.04881 0.73568 0.72962 0.79552 1.30028 1.15445 1.13714 1.18509 1.93535 1.77748 1.57317 1.67372 1.93562 1.32028 1.85087 1.87775 1.20929 0.97857 0.90771 0.91872 0.89276 0.88035 0.91000 0.94803 0.98561 0.92302 0.80508 0.79815 0.80430 0.81745 0.82541 0.83957 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.70 8.65 127.77 1.11 2.80 16 2 N -0.60 -25.83 2.86 -854.58 -2.44 -28.27 16 3 C 0.26 14.07 5.13 85.63 0.44 14.51 16 4 C -0.54 -31.67 9.39 25.60 0.24 -31.43 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.48 5.46 84.65 0.46 0.95 16 7 N -0.93 -56.26 13.29 21.44 0.28 -55.98 16 8 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 12 C 0.53 23.91 7.51 86.79 0.65 24.57 16 13 O -0.59 -33.43 16.19 -3.88 -0.06 -33.49 16 14 C -0.17 -5.41 5.57 -20.09 -0.11 -5.53 16 15 C -0.06 -1.23 7.61 22.52 0.17 -1.05 16 16 C -0.13 -1.92 10.03 22.23 0.22 -1.70 16 17 C 0.00 -0.07 9.47 22.33 0.21 0.14 16 18 C -0.67 -14.53 5.65 22.23 0.13 -14.40 16 19 S 2.51 45.91 5.80 -56.49 -0.33 45.58 16 20 C -0.62 -4.44 10.80 113.37 1.22 -3.21 16 21 O -0.96 -20.87 17.12 -127.65 -2.18 -23.06 16 22 O -0.99 -28.83 17.12 -127.65 -2.19 -31.02 16 23 C 0.01 0.17 9.01 22.53 0.20 0.38 16 24 H 0.09 1.86 7.03 -2.39 -0.02 1.84 16 25 H 0.10 2.21 5.22 -2.39 -0.01 2.20 16 26 H 0.07 2.09 8.10 -2.39 -0.02 2.07 16 27 H 0.03 1.82 8.07 -2.39 -0.02 1.80 16 28 H 0.00 -0.24 7.53 -2.39 -0.02 -0.25 16 29 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.18 3.07 4.04 -2.91 -0.01 3.06 16 31 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 32 H 0.18 1.55 7.56 -2.91 -0.02 1.53 16 33 H 0.16 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.16 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.13 4.41 7.30 -2.91 -0.02 4.38 16 Total: -1.00 -92.27 320.94 1.16 -91.11 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: 1.10 Total: 1.97 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 4.95 Total: -13.98 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -2.16 Total: -84.25 kcal Atomic # 8 Polarization: -83.13 SS G_CDS: -4.43 Total: -87.57 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: 45.91 SS G_CDS: -0.33 Total: 45.58 kcal Total: -92.27 1.16 -91.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833636.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.383 kcal (2) G-P(sol) polarization free energy of solvation -92.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds