Wall clock time and date at job start Tue Mar 31 2020 03:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38159 * 119.98024 * 2 1 4 4 C 1.38701 * 119.95761 * 180.02562 * 3 2 1 5 5 O 1.35924 * 120.04343 * 180.02562 * 4 3 2 6 6 C 1.42896 * 117.00075 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.46884 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00095 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99755 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99880 * 359.97438 * 9 7 6 11 11 C 1.46498 * 119.99981 * 179.97438 * 9 7 6 12 12 C 1.50698 * 109.47486 * 89.99421 * 11 9 7 13 13 H 1.08000 * 119.99722 * 359.97438 * 12 11 9 14 14 C 1.37872 * 120.00170 * 180.02562 * 12 11 9 15 15 N 1.31520 * 120.00005 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00080 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47347 * 59.99733 * 16 14 12 18 18 H 1.48507 * 109.47268 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47188 * 299.99661 * 16 14 12 20 20 C 1.38738 * 119.91880 * 359.97438 * 4 3 2 21 21 C 1.38126 * 119.95522 * 359.97438 * 20 4 3 22 22 C 1.38345 * 119.97676 * 179.97438 * 2 1 3 23 23 Cl 1.73605 * 119.95979 * 359.72660 * 22 2 1 24 24 H 1.08998 * 109.47135 * 270.02403 * 1 2 3 25 25 H 1.08999 * 109.46850 * 30.02744 * 1 2 3 26 26 H 1.08997 * 109.47106 * 150.02405 * 1 2 3 27 27 H 1.08001 * 120.02301 * 359.97434 * 3 2 1 28 28 H 1.08997 * 109.47009 * 299.99128 * 6 5 4 29 29 H 1.08993 * 109.47480 * 59.99649 * 6 5 4 30 30 H 1.09004 * 109.46545 * 90.00927 * 10 9 7 31 31 H 1.08998 * 109.47031 * 210.00169 * 10 9 7 32 32 H 1.08996 * 109.47187 * 330.00779 * 10 9 7 33 33 H 1.09000 * 109.47059 * 210.00110 * 11 9 7 34 34 H 1.09005 * 109.46992 * 329.99394 * 11 9 7 35 35 H 0.96996 * 119.99773 * 180.02562 * 15 14 12 36 36 H 1.07998 * 120.02532 * 179.97438 * 20 4 3 37 37 H 1.07994 * 119.98203 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1967 0.0000 4 6 3.5844 1.1962 -0.0005 5 8 4.2654 2.3725 0.0000 6 6 5.6923 2.2961 -0.0012 7 6 6.2698 3.6881 0.0002 8 8 5.5321 4.6508 0.0016 9 7 7.6062 3.8632 -0.0010 10 6 8.4973 2.7003 -0.0033 11 6 8.1677 5.2163 -0.0002 12 6 8.3617 5.6789 1.4208 13 1 8.0932 5.0300 2.2413 14 6 8.8810 6.9308 1.6735 15 7 9.2075 7.7212 0.6743 16 14 9.1221 7.5039 3.4349 17 1 10.0538 6.5817 4.1324 18 1 9.6912 8.8756 3.4357 19 1 7.8136 7.5100 4.1370 20 6 4.2759 -0.0066 -0.0005 21 6 3.5822 -1.2010 0.0005 22 6 2.1982 -1.1984 0.0005 23 17 1.3286 -2.7009 0.0084 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6574 2.1321 -0.0004 28 1 6.0283 1.7629 0.8881 29 1 6.0270 1.7644 -0.8918 30 1 8.7173 2.4132 -1.0316 31 1 9.4253 2.9527 0.5098 32 1 8.0124 1.8700 0.5101 33 1 9.1284 5.2113 -0.5151 34 1 7.4844 5.8935 -0.5127 35 1 9.5732 8.6019 0.8521 36 1 5.3559 -0.0090 -0.0014 37 1 4.1200 -2.1375 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034651616.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:29 Heat of formation + Delta-G solvation = -75.057565 kcal Electronic energy + Delta-G solvation = -20843.712355 eV Core-core repulsion = 17418.577100 eV Total energy + Delta-G solvation = -3425.135255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.53447 -40.45111 -38.79263 -37.15869 -36.63550 -34.77214 -33.64511 -31.71574 -30.37150 -28.68280 -27.90290 -27.21833 -24.80288 -23.73976 -22.37887 -20.27482 -19.14000 -18.72254 -17.90815 -17.61155 -17.41215 -17.08593 -16.80058 -16.12539 -15.77061 -15.35069 -14.95796 -14.72366 -14.34442 -14.26799 -13.84183 -13.79654 -13.49559 -13.32997 -13.22970 -13.15798 -12.96047 -12.88976 -12.73302 -12.54884 -12.24296 -12.20382 -11.76044 -11.64029 -11.61925 -10.70221 -10.65412 -9.91911 -9.50526 -9.15698 -8.24175 -6.39082 0.15261 0.20594 1.19218 1.36468 1.41024 1.47681 1.61188 1.67674 2.36639 2.54412 2.67892 3.05964 3.47622 3.72630 3.78179 3.89476 4.06391 4.07789 4.28515 4.32374 4.41999 4.63022 4.72252 4.75585 4.86246 4.93172 4.95684 5.00665 5.15488 5.19913 5.23452 5.31732 5.50691 5.55727 5.78151 6.02798 6.25574 6.63577 6.70817 7.23285 7.37667 8.83041 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.031328 B = 0.002702 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.566853 B =10361.635135 C =10612.067061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.039 4.039 3 C -0.160 4.160 4 C 0.123 3.877 5 O -0.319 6.319 6 C 0.055 3.945 7 C 0.493 3.507 8 O -0.587 6.587 9 N -0.603 5.603 10 C 0.070 3.930 11 C 0.258 3.742 12 C -0.546 4.546 13 H 0.055 0.945 14 C 0.007 3.993 15 N -0.928 5.928 16 Si 0.968 3.032 17 H -0.258 1.258 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.203 4.203 21 C -0.062 4.062 22 C -0.088 4.088 23 Cl -0.065 7.065 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.135 0.865 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.032 0.968 34 H -0.003 1.003 35 H 0.268 0.732 36 H 0.164 0.836 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.733 -23.852 -1.790 26.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.040 4.040 3 C -0.179 4.179 4 C 0.078 3.922 5 O -0.232 6.232 6 C -0.023 4.023 7 C 0.281 3.719 8 O -0.467 6.467 9 N -0.336 5.336 10 C -0.071 4.071 11 C 0.137 3.863 12 C -0.585 4.585 13 H 0.073 0.927 14 C -0.192 4.192 15 N -0.568 5.568 16 Si 0.792 3.208 17 H -0.182 1.182 18 H -0.204 1.204 19 H -0.205 1.205 20 C -0.221 4.221 21 C -0.080 4.080 22 C -0.115 4.115 23 Cl -0.036 7.036 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.153 0.847 28 H 0.140 0.860 29 H 0.146 0.854 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.050 0.950 34 H 0.015 0.985 35 H 0.077 0.923 36 H 0.182 0.818 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.152 -23.123 -1.846 25.738 hybrid contribution 0.344 0.832 0.669 1.122 sum -10.808 -22.291 -1.177 24.801 Atomic orbital electron populations 1.20953 0.88440 1.04311 1.03907 1.19727 0.97803 0.90071 0.96379 1.20406 0.91124 0.98900 1.07463 1.19391 0.92236 0.84884 0.95734 1.86168 1.19632 1.28973 1.88429 1.22673 0.79011 0.94187 1.06419 1.20802 0.82728 0.91263 0.77118 1.90686 1.60048 1.44504 1.51459 1.48091 1.05140 1.09324 1.70995 1.22101 0.94931 0.86811 1.03288 1.18820 0.92670 0.78586 0.96193 1.21682 1.42443 1.01307 0.93027 0.92669 1.25868 0.94891 0.96377 1.02039 1.70041 1.43817 1.09775 1.33143 0.85467 0.78460 0.77790 0.79103 1.18199 1.20358 1.20487 1.21486 1.02002 0.90481 1.08176 1.21109 0.91648 0.99267 0.95974 1.20827 0.92870 0.86881 1.10895 1.98344 1.76715 1.31383 1.97148 0.89506 0.90112 0.89996 0.84672 0.85983 0.85406 0.90325 0.91021 0.88273 0.95027 0.98507 0.92331 0.81820 0.82090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 9.61 71.24 0.68 -1.08 16 2 C -0.04 -0.76 5.88 -19.86 -0.12 -0.88 16 3 C -0.16 -3.81 9.64 22.36 0.22 -3.59 16 4 C 0.12 3.09 6.69 22.50 0.15 3.24 16 5 O -0.32 -10.22 9.67 -73.66 -0.71 -10.93 16 6 C 0.05 1.47 3.77 71.24 0.27 1.74 16 7 C 0.49 20.49 7.75 87.66 0.68 21.17 16 8 O -0.59 -31.94 16.08 16.00 0.26 -31.68 16 9 N -0.60 -24.58 2.86 -851.11 -2.43 -27.01 16 10 C 0.07 1.81 10.24 127.77 1.31 3.12 16 11 C 0.26 13.79 5.16 85.63 0.44 14.24 16 12 C -0.55 -31.27 9.39 25.60 0.24 -31.03 16 13 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 14 C 0.01 0.43 5.46 84.65 0.46 0.89 16 15 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 16 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 17 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 C -0.20 -3.68 9.04 22.36 0.20 -3.48 16 21 C -0.06 -1.00 9.82 22.28 0.22 -0.78 16 22 C -0.09 -1.61 6.31 22.33 0.14 -1.47 16 23 Cl -0.06 -1.03 27.29 -2.72 -0.07 -1.10 16 24 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 26 H 0.08 1.09 6.90 -2.39 -0.02 1.07 16 27 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 28 H 0.12 2.45 6.92 -2.39 -0.02 2.43 16 29 H 0.13 2.39 7.63 -2.39 -0.02 2.37 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.99 8.07 -2.39 -0.02 1.97 16 32 H 0.10 1.70 6.44 -2.39 -0.02 1.68 16 33 H 0.03 1.68 8.07 -2.39 -0.02 1.67 16 34 H 0.00 -0.20 7.42 -2.38 -0.02 -0.22 16 35 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 36 H 0.16 1.99 6.30 -2.91 -0.02 1.97 16 37 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -78.29 333.16 5.33 -72.96 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 1.08 Total: 4.74 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 4.90 Total: 2.09 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -2.15 Total: -82.81 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -0.45 Total: -42.61 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.07 Total: -1.10 kcal Total: -78.29 5.33 -72.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651616.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.094 kcal (2) G-P(sol) polarization free energy of solvation -78.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds