Wall clock time and date at job start Tue Mar 31 2020 03:22:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38278 * 119.96141 * 2 1
4 4 C 1.38251 * 120.11906 * 179.97438 * 3 2 1
5 5 C 1.38252 * 120.04239 * 0.04611 * 4 3 2
6 6 Cl 1.73603 * 120.03781 * 180.25769 * 5 4 3
7 7 C 1.38815 * 119.92459 * 359.97361 * 5 4 3
8 8 O 1.35930 * 120.05985 * 180.02562 * 7 5 4
9 9 C 1.42893 * 116.99957 * 180.02562 * 8 7 5
10 10 C 1.50697 * 109.47463 * 180.02562 * 9 8 7
11 11 O 1.21289 * 119.99477 * 0.02562 * 10 9 8
12 12 N 1.34770 * 120.00535 * 180.02562 * 10 9 8
13 13 C 1.46503 * 119.99744 * 0.02562 * 12 10 9
14 14 C 1.46500 * 120.00144 * 179.97438 * 12 10 9
15 15 C 1.50702 * 109.46703 * 90.00723 * 14 12 10
16 16 H 1.08006 * 120.00102 * 359.97438 * 15 14 12
17 17 C 1.37876 * 119.99919 * 180.02562 * 15 14 12
18 18 N 1.31514 * 120.00201 * 359.97438 * 17 15 14
19 19 Si 1.86806 * 120.00117 * 179.97438 * 17 15 14
20 20 H 1.48494 * 109.47336 * 89.99686 * 19 17 15
21 21 H 1.48501 * 109.47124 * 209.99836 * 19 17 15
22 22 H 1.48504 * 109.46527 * 329.99598 * 19 17 15
23 23 C 1.38151 * 119.96265 * 180.02562 * 2 1 3
24 24 H 1.09000 * 109.46711 * 269.97874 * 1 2 3
25 25 H 1.08996 * 109.46942 * 29.98001 * 1 2 3
26 26 H 1.09002 * 109.46795 * 149.97700 * 1 2 3
27 27 H 1.08000 * 119.94149 * 359.97438 * 3 2 1
28 28 H 1.08000 * 119.97834 * 180.02562 * 4 3 2
29 29 H 1.08997 * 109.47232 * 300.00400 * 9 8 7
30 30 H 1.09008 * 109.46822 * 60.00182 * 9 8 7
31 31 H 1.08992 * 109.47324 * 89.99772 * 13 12 10
32 32 H 1.09004 * 109.46686 * 209.99522 * 13 12 10
33 33 H 1.09001 * 109.47218 * 329.99375 * 13 12 10
34 34 H 1.09001 * 109.47121 * 209.99835 * 14 12 10
35 35 H 1.09001 * 109.47378 * 330.00593 * 14 12 10
36 36 H 0.96996 * 120.00395 * 180.02562 * 18 17 15
37 37 H 1.07995 * 120.02562 * 0.02562 * 23 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1976 1.1980 0.0000
4 6 3.5801 1.2018 0.0005
5 6 4.2755 0.0069 0.0001
6 17 6.0115 0.0118 0.0075
7 6 3.5840 -1.1968 -0.0003
8 8 4.2650 -2.3732 -0.0002
9 6 3.4881 -3.5725 -0.0012
10 6 4.4074 -4.7666 -0.0003
11 8 5.6096 -4.6063 0.0016
12 7 3.8937 -6.0125 -0.0015
13 6 2.4415 -6.2061 -0.0043
14 6 4.7874 -7.1734 -0.0012
15 6 5.0922 -7.5722 1.4198
16 1 4.6633 -7.0163 2.2405
17 6 5.9192 -8.6461 1.6721
18 7 6.4418 -9.3227 0.6727
19 14 6.2976 -9.1401 3.4335
20 1 5.2888 -10.1254 3.8988
21 1 7.6504 -9.7492 3.4971
22 1 6.2543 -7.9382 4.3047
23 6 2.1969 -1.1969 -0.0005
24 1 -0.3633 -0.0004 1.0277
25 1 -0.3633 0.8901 -0.5135
26 1 -0.3633 -0.8898 -0.5142
27 1 1.6560 2.1324 -0.0004
28 1 4.1171 2.1388 0.0010
29 1 2.8586 -3.5983 0.8882
30 1 2.8600 -3.5977 -0.8918
31 1 2.0833 -6.2539 -1.0326
32 1 2.1981 -7.1365 0.5088
33 1 1.9628 -5.3721 0.5089
34 1 4.3044 -8.0039 -0.5160
35 1 5.7149 -6.9180 -0.5138
36 1 7.0234 -10.0784 0.8502
37 1 1.6568 -2.1320 -0.0014
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000034651641.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:22:31
Heat of formation + Delta-G solvation = -53.185260 kcal
Electronic energy + Delta-G solvation = -21135.104337 eV
Core-core repulsion = 17710.917536 eV
Total energy + Delta-G solvation = -3424.186801 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 297.092 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.48781 -38.99665 -37.49385 -36.41229 -34.87549 -32.76173 -32.60948 -30.49842
-29.14521 -27.48876 -26.78070 -25.68279 -23.25894 -22.17155 -21.77097 -18.74173
-18.15621 -16.68444 -16.65023 -16.49888 -16.13823 -15.76652 -15.20230 -14.48366
-14.43692 -14.27641 -13.85537 -13.82714 -13.31457 -13.00851 -12.71945 -12.43970
-12.35664 -12.20235 -11.96085 -11.82478 -11.37786 -11.37039 -11.22767 -10.99972
-10.87776 -10.76852 -10.60875 -10.18189 -9.66909 -9.00016 -8.99035 -8.45948
-8.26459 -7.75237 -6.06853 -4.11984 0.91219 1.13291 2.19724 2.80306
3.23776 3.29356 3.36566 3.37776 3.41850 4.01046 4.42361 4.45794
4.50628 4.75283 4.89344 4.94308 5.04987 5.13279 5.23234 5.25130
5.27992 5.28936 5.43428 5.51689 5.68561 5.80760 5.87468 5.92992
6.09742 6.24324 6.43197 6.91862 7.18899 7.37835 7.45826 7.88967
8.18586 8.26635 8.83847 8.98224 9.53218 11.01344
Molecular weight = 297.09amu
Principal moments of inertia in cm(-1)
A = 0.019991 B = 0.003524 C = 0.003216
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1400.274830 B = 7943.817336 C = 8704.294327
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.043 4.043
3 C -0.154 4.154
4 C -0.069 4.069
5 C -0.076 4.076
6 Cl -0.052 7.052
7 C 0.150 3.850
8 O -0.273 6.273
9 C 0.040 3.960
10 C 0.506 3.494
11 O -0.513 6.513
12 N -0.599 5.599
13 C 0.079 3.921
14 C 0.247 3.753
15 C -0.529 4.529
16 H 0.058 0.942
17 C 0.062 3.938
18 N -0.894 5.894
19 Si 0.899 3.101
20 H -0.280 1.280
21 H -0.285 1.285
22 H -0.274 1.274
23 C -0.204 4.204
24 H 0.075 0.925
25 H 0.070 0.930
26 H 0.069 0.931
27 H 0.131 0.869
28 H 0.138 0.862
29 H 0.088 0.912
30 H 0.087 0.913
31 H 0.048 0.952
32 H 0.079 0.921
33 H 0.054 0.946
34 H 0.036 0.964
35 H 0.046 0.954
36 H 0.264 0.736
37 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.390 19.312 -2.712 24.236
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.043 4.043
3 C -0.172 4.172
4 C -0.088 4.088
5 C -0.104 4.104
6 Cl -0.023 7.023
7 C 0.102 3.898
8 O -0.184 6.184
9 C -0.038 4.038
10 C 0.290 3.710
11 O -0.388 6.388
12 N -0.333 5.333
13 C -0.065 4.065
14 C 0.128 3.872
15 C -0.568 4.568
16 H 0.076 0.924
17 C -0.141 4.141
18 N -0.533 5.533
19 Si 0.727 3.273
20 H -0.206 1.206
21 H -0.210 1.210
22 H -0.198 1.198
23 C -0.223 4.223
24 H 0.093 0.907
25 H 0.088 0.912
26 H 0.088 0.912
27 H 0.149 0.851
28 H 0.156 0.844
29 H 0.106 0.894
30 H 0.105 0.895
31 H 0.066 0.934
32 H 0.098 0.902
33 H 0.073 0.927
34 H 0.054 0.946
35 H 0.064 0.936
36 H 0.074 0.926
37 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -13.232 19.163 -2.760 23.450
hybrid contribution 0.059 -0.493 1.004 1.120
sum -13.173 18.669 -1.756 22.916
Atomic orbital electron populations
1.20836 0.90566 1.03148 1.02751 1.19784 0.96336 0.92326 0.95864
1.20858 0.93180 0.97875 1.05321 1.20885 0.94130 0.96034 0.97717
1.20219 0.85935 0.92231 1.11987 1.98391 1.08065 1.98842 1.97001
1.18804 0.90345 0.85721 0.94949 1.86304 1.33837 1.11047 1.87256
1.22751 0.94478 0.83656 1.02963 1.19652 0.88787 0.83566 0.79007
1.90743 1.14917 1.84997 1.48116 1.48087 1.07034 1.06429 1.71746
1.21707 0.81373 1.02713 1.00666 1.19348 0.89399 0.80696 0.97709
1.21424 1.29570 1.13622 0.92207 0.92394 1.24936 0.95405 0.96178
0.97536 1.69926 1.32379 1.20183 1.30794 0.86480 0.77715 0.78610
0.84543 1.20613 1.21016 1.19841 1.21130 0.91969 0.99526 1.09701
0.90658 0.91152 0.91190 0.85147 0.84402 0.89375 0.89504 0.93383
0.90241 0.92726 0.94630 0.93637 0.92635 0.84536
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.71 10.01 36.00 0.36 -0.35 16
2 C -0.04 -0.39 5.88 -104.64 -0.62 -1.01 16
3 C -0.15 -1.36 9.70 -39.56 -0.38 -1.74 16
4 C -0.07 -0.71 9.83 -39.57 -0.39 -1.10 16
5 C -0.08 -1.03 6.33 -39.36 -0.25 -1.28 16
6 Cl -0.05 -0.77 28.50 -51.86 -1.48 -2.24 16
7 C 0.15 2.12 6.68 -39.19 -0.26 1.85 16
8 O -0.27 -4.72 9.13 -39.43 -0.36 -5.08 16
9 C 0.04 0.61 3.77 36.00 0.14 0.75 16
10 C 0.51 10.72 7.75 -10.99 -0.09 10.63 16
11 O -0.51 -13.59 16.08 -14.36 -0.23 -13.82 16
12 N -0.60 -12.46 2.86 -182.95 -0.52 -12.99 16
13 C 0.08 1.16 10.24 59.85 0.61 1.77 16
14 C 0.25 6.42 5.16 -5.19 -0.03 6.40 16
15 C -0.53 -15.00 9.39 -34.44 -0.32 -15.33 16
16 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16
17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16
18 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16
19 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16
20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
22 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16
23 C -0.20 -2.25 8.69 -39.44 -0.34 -2.59 16
24 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
25 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16
26 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16
27 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16
28 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16
29 H 0.09 1.12 6.92 -51.93 -0.36 0.76 16
30 H 0.09 1.04 7.63 -51.92 -0.40 0.64 16
31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16
32 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16
33 H 0.05 0.61 6.44 -51.93 -0.33 0.28 16
34 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16
35 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16
36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
37 H 0.14 1.23 6.30 -52.49 -0.33 0.90 16
LS Contribution 335.14 15.07 5.05 5.05
Total: -1.00 -34.89 335.14 -8.21 -43.10
By element:
Atomic # 1 Polarization: -0.03 SS G_CDS: -4.72 Total: -4.75 kcal
Atomic # 6 Polarization: 1.35 SS G_CDS: -1.66 Total: -0.32 kcal
Atomic # 7 Polarization: -39.04 SS G_CDS: 0.21 Total: -38.83 kcal
Atomic # 8 Polarization: -18.32 SS G_CDS: -0.59 Total: -18.91 kcal
Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal
Atomic # 17 Polarization: -0.77 SS G_CDS: -1.48 Total: -2.24 kcal
Total LS contribution 5.05 Total: 5.05 kcal
Total: -34.89 -8.21 -43.10 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000034651641.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.086 kcal
(2) G-P(sol) polarization free energy of solvation -34.888 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.975 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.185 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds