Wall clock time and date at job start Tue Mar 31 2020 03:22:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38278 * 119.96141 * 2 1
4 4 C 1.38251 * 120.11906 * 179.97438 * 3 2 1
5 5 C 1.38252 * 120.04239 * 0.04611 * 4 3 2
6 6 Cl 1.73603 * 120.03781 * 180.25769 * 5 4 3
7 7 C 1.38815 * 119.92459 * 359.97361 * 5 4 3
8 8 O 1.35930 * 120.05985 * 180.02562 * 7 5 4
9 9 C 1.42893 * 116.99957 * 180.02562 * 8 7 5
10 10 C 1.50697 * 109.47463 * 180.02562 * 9 8 7
11 11 O 1.21289 * 119.99477 * 0.02562 * 10 9 8
12 12 N 1.34770 * 120.00535 * 180.02562 * 10 9 8
13 13 C 1.46503 * 119.99744 * 0.02562 * 12 10 9
14 14 C 1.46500 * 120.00144 * 179.97438 * 12 10 9
15 15 C 1.50702 * 109.46703 * 90.00723 * 14 12 10
16 16 H 1.08006 * 120.00102 * 359.97438 * 15 14 12
17 17 C 1.37876 * 119.99919 * 180.02562 * 15 14 12
18 18 N 1.31514 * 120.00201 * 359.97438 * 17 15 14
19 19 Si 1.86806 * 120.00117 * 179.97438 * 17 15 14
20 20 H 1.48494 * 109.47336 * 89.99686 * 19 17 15
21 21 H 1.48501 * 109.47124 * 209.99836 * 19 17 15
22 22 H 1.48504 * 109.46527 * 329.99598 * 19 17 15
23 23 C 1.38151 * 119.96265 * 180.02562 * 2 1 3
24 24 H 1.09000 * 109.46711 * 269.97874 * 1 2 3
25 25 H 1.08996 * 109.46942 * 29.98001 * 1 2 3
26 26 H 1.09002 * 109.46795 * 149.97700 * 1 2 3
27 27 H 1.08000 * 119.94149 * 359.97438 * 3 2 1
28 28 H 1.08000 * 119.97834 * 180.02562 * 4 3 2
29 29 H 1.08997 * 109.47232 * 300.00400 * 9 8 7
30 30 H 1.09008 * 109.46822 * 60.00182 * 9 8 7
31 31 H 1.08992 * 109.47324 * 89.99772 * 13 12 10
32 32 H 1.09004 * 109.46686 * 209.99522 * 13 12 10
33 33 H 1.09001 * 109.47218 * 329.99375 * 13 12 10
34 34 H 1.09001 * 109.47121 * 209.99835 * 14 12 10
35 35 H 1.09001 * 109.47378 * 330.00593 * 14 12 10
36 36 H 0.96996 * 120.00395 * 180.02562 * 18 17 15
37 37 H 1.07995 * 120.02562 * 0.02562 * 23 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1976 1.1980 0.0000
4 6 3.5801 1.2018 0.0005
5 6 4.2755 0.0069 0.0001
6 17 6.0115 0.0118 0.0075
7 6 3.5840 -1.1968 -0.0003
8 8 4.2650 -2.3732 -0.0002
9 6 3.4881 -3.5725 -0.0012
10 6 4.4074 -4.7666 -0.0003
11 8 5.6096 -4.6063 0.0016
12 7 3.8937 -6.0125 -0.0015
13 6 2.4415 -6.2061 -0.0043
14 6 4.7874 -7.1734 -0.0012
15 6 5.0922 -7.5722 1.4198
16 1 4.6633 -7.0163 2.2405
17 6 5.9192 -8.6461 1.6721
18 7 6.4418 -9.3227 0.6727
19 14 6.2976 -9.1401 3.4335
20 1 5.2888 -10.1254 3.8988
21 1 7.6504 -9.7492 3.4971
22 1 6.2543 -7.9382 4.3047
23 6 2.1969 -1.1969 -0.0005
24 1 -0.3633 -0.0004 1.0277
25 1 -0.3633 0.8901 -0.5135
26 1 -0.3633 -0.8898 -0.5142
27 1 1.6560 2.1324 -0.0004
28 1 4.1171 2.1388 0.0010
29 1 2.8586 -3.5983 0.8882
30 1 2.8600 -3.5977 -0.8918
31 1 2.0833 -6.2539 -1.0326
32 1 2.1981 -7.1365 0.5088
33 1 1.9628 -5.3721 0.5089
34 1 4.3044 -8.0039 -0.5160
35 1 5.7149 -6.9180 -0.5138
36 1 7.0234 -10.0784 0.8502
37 1 1.6568 -2.1320 -0.0014
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000034651641.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:22:31
Heat of formation + Delta-G solvation = -74.970858 kcal
Electronic energy + Delta-G solvation = -21136.049032 eV
Core-core repulsion = 17710.917536 eV
Total energy + Delta-G solvation = -3425.131495 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 297.092 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.53710 -40.43089 -38.57713 -37.40857 -36.64274 -34.78043 -33.41781 -31.49483
-30.60301 -28.90091 -27.61276 -27.19779 -24.92434 -23.35465 -22.57723 -20.28905
-19.17102 -18.73391 -17.92022 -17.53099 -17.44496 -16.97591 -16.79817 -16.11207
-15.78992 -15.21608 -14.72000 -14.68257 -14.58031 -14.21482 -13.82404 -13.77942
-13.64127 -13.49619 -13.23912 -13.13543 -12.85111 -12.55504 -12.48543 -12.43311
-12.23898 -12.18777 -11.82760 -11.77260 -11.72125 -10.70149 -10.65931 -9.78646
-9.50675 -9.16464 -8.24867 -6.39712 0.11759 0.31372 1.22864 1.35048
1.38919 1.48345 1.61352 1.67671 2.35873 2.59052 2.66030 3.05194
3.47176 3.74485 3.83273 3.92026 4.04671 4.13214 4.27701 4.39590
4.43654 4.68671 4.71312 4.79349 4.91976 4.93563 4.97798 5.07683
5.19166 5.19649 5.28883 5.50721 5.54351 5.71828 5.78876 6.02376
6.20492 6.63118 6.70328 7.23172 7.37681 8.82526
Molecular weight = 297.09amu
Principal moments of inertia in cm(-1)
A = 0.019991 B = 0.003524 C = 0.003216
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1400.274830 B = 7943.817336 C = 8704.294327
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.040 4.040
3 C -0.145 4.145
4 C -0.070 4.070
5 C -0.103 4.103
6 Cl -0.081 7.081
7 C 0.119 3.881
8 O -0.314 6.314
9 C 0.056 3.944
10 C 0.493 3.507
11 O -0.584 6.584
12 N -0.603 5.603
13 C 0.071 3.929
14 C 0.260 3.740
15 C -0.546 4.546
16 H 0.054 0.946
17 C 0.007 3.993
18 N -0.928 5.928
19 Si 0.968 3.032
20 H -0.259 1.259
21 H -0.282 1.282
22 H -0.275 1.275
23 C -0.205 4.205
24 H 0.086 0.914
25 H 0.086 0.914
26 H 0.079 0.921
27 H 0.165 0.835
28 H 0.156 0.844
29 H 0.121 0.879
30 H 0.127 0.873
31 H 0.078 0.922
32 H 0.072 0.928
33 H 0.098 0.902
34 H 0.032 0.968
35 H -0.004 1.004
36 H 0.268 0.732
37 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.207 20.798 -1.813 27.701
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.040 4.040
3 C -0.163 4.163
4 C -0.089 4.089
5 C -0.130 4.130
6 Cl -0.053 7.053
7 C 0.073 3.927
8 O -0.226 6.226
9 C -0.022 4.022
10 C 0.280 3.720
11 O -0.464 6.464
12 N -0.336 5.336
13 C -0.071 4.071
14 C 0.139 3.861
15 C -0.584 4.584
16 H 0.073 0.927
17 C -0.192 4.192
18 N -0.568 5.568
19 Si 0.792 3.208
20 H -0.184 1.184
21 H -0.207 1.207
22 H -0.200 1.200
23 C -0.223 4.223
24 H 0.105 0.895
25 H 0.105 0.895
26 H 0.098 0.902
27 H 0.182 0.818
28 H 0.174 0.826
29 H 0.139 0.861
30 H 0.145 0.855
31 H 0.097 0.903
32 H 0.091 0.909
33 H 0.116 0.884
34 H 0.050 0.950
35 H 0.014 0.986
36 H 0.077 0.923
37 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -17.131 20.659 -1.867 26.902
hybrid contribution 1.134 -0.856 0.669 1.570
sum -15.996 19.803 -1.198 25.485
Atomic orbital electron populations
1.20925 0.87899 1.04525 1.03810 1.20239 0.98175 0.91659 0.93908
1.21316 0.92482 0.99405 1.03118 1.21182 0.95070 0.95602 0.97008
1.20578 0.84672 0.93523 1.14226 1.98372 1.10704 1.98919 1.97277
1.19097 0.91740 0.84567 0.97335 1.86235 1.35704 1.12297 1.88410
1.22657 0.92597 0.80732 1.06220 1.20773 0.88885 0.85098 0.77206
1.90700 1.18297 1.86181 1.51237 1.48078 1.09197 1.05191 1.71090
1.22091 0.77438 1.04272 1.03256 1.18806 0.88693 0.82471 0.96165
1.21713 1.29918 1.13773 0.93030 0.92743 1.25869 0.95080 0.96168
1.02050 1.70045 1.32940 1.20699 1.33075 0.85407 0.77962 0.78406
0.78989 1.18403 1.20715 1.19969 1.21416 0.90534 1.01391 1.08985
0.89550 0.89501 0.90238 0.81787 0.82650 0.86141 0.85546 0.90341
0.90940 0.88396 0.95000 0.98619 0.92335 0.82359
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.82 10.01 71.24 0.71 -0.11 16
2 C -0.04 -0.56 5.88 -19.88 -0.12 -0.68 16
3 C -0.15 -2.01 9.70 22.28 0.22 -1.79 16
4 C -0.07 -1.31 9.83 22.28 0.22 -1.09 16
5 C -0.10 -2.74 6.33 22.41 0.14 -2.60 16
6 Cl -0.08 -2.52 28.50 -2.72 -0.08 -2.59 16
7 C 0.12 3.24 6.68 22.52 0.15 3.40 16
8 O -0.31 -10.87 9.13 -73.73 -0.67 -11.54 16
9 C 0.06 1.60 3.77 71.23 0.27 1.87 16
10 C 0.49 21.26 7.75 87.66 0.68 21.94 16
11 O -0.58 -32.89 16.08 15.98 0.26 -32.64 16
12 N -0.60 -25.22 2.86 -851.12 -2.43 -27.65 16
13 C 0.07 1.89 10.24 127.77 1.31 3.19 16
14 C 0.26 14.11 5.16 85.63 0.44 14.55 16
15 C -0.55 -31.77 9.39 25.60 0.24 -31.53 16
16 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16
17 C 0.01 0.43 5.46 84.65 0.46 0.89 16
18 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16
19 Si 0.97 45.40 29.54 68.60 2.03 47.42 16
20 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16
21 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16
22 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16
23 C -0.20 -3.84 8.69 22.36 0.19 -3.65 16
24 H 0.09 0.49 8.14 -2.39 -0.02 0.48 16
25 H 0.09 0.37 8.08 -2.39 -0.02 0.35 16
26 H 0.08 0.46 8.08 -2.39 -0.02 0.44 16
27 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16
28 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16
29 H 0.12 2.63 6.92 -2.39 -0.02 2.61 16
30 H 0.13 2.57 7.63 -2.38 -0.02 2.56 16
31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16
32 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16
33 H 0.10 1.76 6.44 -2.39 -0.02 1.74 16
34 H 0.03 1.72 8.07 -2.39 -0.02 1.70 16
35 H 0.00 -0.28 7.42 -2.39 -0.02 -0.29 16
36 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16
37 H 0.16 2.12 6.30 -2.91 -0.02 2.10 16
Total: -1.00 -83.03 335.14 5.38 -77.64
By element:
Atomic # 1 Polarization: 0.30 SS G_CDS: 1.08 Total: 1.38 kcal
Atomic # 6 Polarization: -0.53 SS G_CDS: 4.92 Total: 4.39 kcal
Atomic # 7 Polarization: -81.91 SS G_CDS: -2.15 Total: -84.06 kcal
Atomic # 8 Polarization: -43.77 SS G_CDS: -0.42 Total: -44.18 kcal
Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal
Atomic # 17 Polarization: -2.52 SS G_CDS: -0.08 Total: -2.59 kcal
Total: -83.03 5.38 -77.64 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000034651641.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.673 kcal
(2) G-P(sol) polarization free energy of solvation -83.028 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.354 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.383 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.644 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.971 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds