Wall clock time and date at job start Tue Mar 31 2020 03:22:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13599 * 1
3 3 C 1.47205 * 179.97438 * 2 1
4 4 C 1.52995 * 109.47075 * 118.88379 * 3 2 1
5 5 N 1.46501 * 109.47472 * 179.97438 * 4 3 2
6 6 C 1.46497 * 120.00300 * 270.00443 * 5 4 3
7 7 C 1.50707 * 109.46907 * 269.99281 * 6 5 4
8 8 H 1.07996 * 119.99528 * 0.02562 * 7 6 5
9 9 C 1.37874 * 119.99813 * 180.02562 * 7 6 5
10 10 N 1.31512 * 120.00106 * 0.02562 * 9 7 6
11 11 Si 1.86800 * 119.99933 * 180.02562 * 9 7 6
12 12 H 1.48504 * 109.46919 * 0.02562 * 11 9 7
13 13 H 1.48510 * 109.46846 * 120.00038 * 11 9 7
14 14 H 1.48490 * 109.47327 * 240.00135 * 11 9 7
15 15 C 1.34784 * 119.99392 * 89.99586 * 5 4 3
16 16 O 1.21280 * 119.99668 * 180.02562 * 15 5 4
17 17 C 1.50703 * 120.00276 * 0.02562 * 15 5 4
18 18 N 1.46491 * 109.46899 * 179.97438 * 17 15 5
19 19 C 1.44545 * 120.61733 * 269.99881 * 18 17 15
20 20 C 1.53419 * 111.71899 * 180.02562 * 19 18 17
21 21 S 1.82066 * 103.93828 * 359.78517 * 20 19 18
22 22 C 1.33005 * 120.61505 * 90.02440 * 18 17 15
23 23 O 1.21623 * 125.19972 * 359.93640 * 22 18 17
24 24 H 1.08999 * 109.47594 * 358.87834 * 3 2 1
25 25 H 1.09003 * 109.46722 * 238.88272 * 3 2 1
26 26 H 1.09002 * 109.47441 * 59.99835 * 4 3 2
27 27 H 1.09002 * 109.47388 * 300.00095 * 4 3 2
28 28 H 1.08996 * 109.47063 * 29.99437 * 6 5 4
29 29 H 1.08999 * 109.46976 * 149.99578 * 6 5 4
30 30 H 0.97004 * 120.00023 * 180.02562 * 10 9 7
31 31 H 1.08992 * 109.46878 * 59.99172 * 17 15 5
32 32 H 1.09007 * 109.46441 * 299.99463 * 17 15 5
33 33 H 1.09002 * 109.03281 * 300.61906 * 19 18 17
34 34 H 1.08999 * 109.04019 * 59.42901 * 19 18 17
35 35 H 1.09006 * 110.53710 * 118.61245 * 20 19 18
36 36 H 1.08995 * 110.53947 * 241.24259 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 6 3.1177 0.6976 -1.2630
5 7 4.5827 0.6989 -1.2628
6 6 5.3142 1.8104 -0.6500
7 6 5.5648 2.8777 -1.6841
8 1 5.2138 2.7417 -2.6963
9 6 6.2421 4.0276 -1.3378
10 7 6.6699 4.1928 -0.1052
11 14 6.5521 5.3508 -2.6193
12 1 5.9736 4.9259 -3.9194
13 1 5.9139 6.6196 -2.1851
14 1 8.0143 5.5591 -2.7721
15 6 5.2575 -0.3228 -1.8263
16 8 6.4703 -0.3220 -1.8258
17 6 4.5049 -1.4660 -2.4571
18 7 5.4578 -2.4400 -2.9950
19 6 5.9362 -2.3284 -4.3544
20 6 6.9217 -3.4513 -4.7035
21 16 7.0309 -4.4305 -3.1724
22 6 5.8983 -3.4438 -2.2418
23 8 5.5750 -3.6483 -1.0873
24 1 2.9719 -1.0266 0.0201
25 1 2.9711 0.5319 0.8798
26 1 2.7539 1.7250 -1.2831
27 1 2.7546 0.1664 -2.1429
28 1 4.7247 2.2270 0.1667
29 1 6.2668 1.4488 -0.2628
30 1 7.1461 5.0021 0.1385
31 1 3.8784 -1.0870 -3.2644
32 1 3.8783 -1.9469 -1.7059
33 1 5.0865 -2.3766 -5.0354
34 1 6.4343 -1.3669 -4.4783
35 1 6.5355 -4.0581 -5.5225
36 1 7.8965 -3.0379 -4.9620
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000049377394.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:22:07
Heat of formation + Delta-G solvation = -28.456724 kcal
Electronic energy + Delta-G solvation = -21758.455294 eV
Core-core repulsion = 18369.677260 eV
Total energy + Delta-G solvation = -3388.778034 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 297.093 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.43014 -38.82430 -36.95204 -36.62261 -35.29365 -33.01036 -31.70695 -30.91225
-28.77973 -26.85014 -24.90001 -24.09241 -23.05388 -21.08453 -18.80062 -18.28933
-17.72681 -17.25744 -16.74853 -16.50595 -15.95148 -15.38195 -14.94546 -14.73628
-14.48884 -14.31681 -14.24189 -13.96851 -13.69330 -13.19854 -13.02339 -12.62986
-12.51354 -12.48471 -12.20548 -11.97949 -11.70365 -11.34861 -11.09400 -11.03997
-10.91404 -10.70838 -10.27129 -9.94990 -9.80174 -9.72238 -8.90903 -8.54051
-8.30896 -7.95989 -6.15041 -4.20415 1.03052 1.68307 2.19237 2.69169
2.79123 2.89182 3.11774 3.22758 3.31135 3.33039 3.58989 4.01121
4.12669 4.34886 4.45197 4.79553 4.88087 4.96941 5.09110 5.12408
5.13114 5.17047 5.20657 5.38632 5.43823 5.75110 5.81462 6.00609
6.74001 6.83188 7.27721 7.33393 7.52839 7.55067 7.80044 8.09063
8.12436 8.70851 8.86632 9.45263 10.93192
Molecular weight = 297.09amu
Principal moments of inertia in cm(-1)
A = 0.011280 B = 0.005271 C = 0.003952
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2481.733313 B = 5310.329228 C = 7083.880276
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.444 5.444
2 C 0.217 3.783
3 C -0.053 4.053
4 C 0.116 3.884
5 N -0.593 5.593
6 C 0.245 3.755
7 C -0.529 4.529
8 H 0.058 0.942
9 C 0.063 3.937
10 N -0.892 5.892
11 Si 0.897 3.103
12 H -0.274 1.274
13 H -0.283 1.283
14 H -0.283 1.283
15 C 0.491 3.509
16 O -0.521 6.521
17 C 0.094 3.906
18 N -0.590 5.590
19 C 0.099 3.901
20 C -0.096 4.096
21 S -0.182 6.182
22 C 0.553 3.447
23 O -0.484 6.484
24 H 0.108 0.892
25 H 0.119 0.881
26 H 0.098 0.902
27 H 0.074 0.926
28 H 0.037 0.963
29 H 0.047 0.953
30 H 0.264 0.736
31 H 0.111 0.889
32 H 0.113 0.887
33 H 0.090 0.910
34 H 0.097 0.903
35 H 0.116 0.884
36 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.095 -12.717 -9.319 16.289
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.122 5.122
2 C -0.101 4.101
3 C -0.095 4.095
4 C -0.010 4.010
5 N -0.325 5.325
6 C 0.126 3.874
7 C -0.568 4.568
8 H 0.077 0.923
9 C -0.140 4.140
10 N -0.530 5.530
11 Si 0.725 3.275
12 H -0.198 1.198
13 H -0.209 1.209
14 H -0.209 1.209
15 C 0.276 3.724
16 O -0.396 6.396
17 C -0.036 4.036
18 N -0.326 5.326
19 C -0.025 4.025
20 C -0.245 4.245
21 S 0.043 5.957
22 C 0.232 3.768
23 O -0.361 6.361
24 H 0.126 0.874
25 H 0.137 0.863
26 H 0.116 0.884
27 H 0.093 0.907
28 H 0.055 0.945
29 H 0.065 0.935
30 H 0.074 0.926
31 H 0.129 0.871
32 H 0.131 0.869
33 H 0.108 0.892
34 H 0.115 0.885
35 H 0.135 0.865
36 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -4.538 -13.698 -8.291 16.642
hybrid contribution 0.017 1.982 -0.906 2.180
sum -4.520 -11.716 -9.197 15.565
Atomic orbital electron populations
1.81211 1.13011 1.09192 1.08766 1.29068 0.95050 0.92850 0.93093
1.19918 0.81425 1.04805 1.03311 1.21349 0.82038 1.02752 0.94888
1.48222 1.04908 1.22332 1.57088 1.19388 0.92694 0.82065 0.93256
1.21408 1.36913 1.01924 0.96584 0.92344 1.24925 0.95273 0.98319
0.95470 1.69929 1.38090 1.27522 1.17479 0.86459 0.78114 0.81422
0.81497 1.19836 1.20929 1.20881 1.20629 0.88590 0.83295 0.79935
1.90718 1.13515 1.78004 1.57348 1.21640 0.91330 0.89689 1.00948
1.47381 1.45701 1.26509 1.12964 1.21399 0.98552 1.00345 0.82202
1.24164 1.04265 0.98136 0.97924 1.87350 1.57202 1.39092 1.12054
1.21573 0.83574 0.83077 0.88625 1.90860 1.59853 1.70808 1.14563
0.87412 0.86310 0.88395 0.90749 0.94541 0.93546 0.92635 0.87062
0.86921 0.89190 0.88487 0.86540 0.86401
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.44 -6.43 18.54 42.15 0.78 -5.65 16
2 C 0.22 2.58 15.43 -20.76 -0.32 2.26 16
3 C -0.05 -0.55 6.03 -29.52 -0.18 -0.73 16
4 C 0.12 1.42 5.17 -4.04 -0.02 1.40 16
5 N -0.59 -10.35 2.46 -175.06 -0.43 -10.78 16
6 C 0.24 5.65 5.16 -5.19 -0.03 5.63 16
7 C -0.53 -13.63 9.39 -34.44 -0.32 -13.95 16
8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16
9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16
10 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16
11 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16
12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16
13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
15 C 0.49 8.67 7.74 -10.98 -0.08 8.58 16
16 O -0.52 -11.79 16.01 5.56 0.09 -11.70 16
17 C 0.09 1.15 4.60 -5.20 -0.02 1.12 16
18 N -0.59 -7.54 2.27 -180.66 -0.41 -7.95 16
19 C 0.10 0.89 6.80 -4.87 -0.03 0.86 16
20 C -0.10 -0.73 7.42 37.37 0.28 -0.46 16
21 S -0.18 -2.24 23.25 -107.50 -2.50 -4.74 16
22 C 0.55 8.46 8.27 53.27 0.44 8.90 16
23 O -0.48 -8.95 17.28 5.26 0.09 -8.86 16
24 H 0.11 0.99 7.22 -51.93 -0.37 0.61 16
25 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16
26 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16
27 H 0.07 0.69 6.44 -51.93 -0.33 0.35 16
28 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16
29 H 0.05 1.25 7.42 -51.93 -0.39 0.87 16
30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16
31 H 0.11 0.96 7.34 -51.93 -0.38 0.57 16
32 H 0.11 1.25 6.70 -51.93 -0.35 0.90 16
33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16
34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16
35 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16
36 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16
LS Contribution 333.49 15.07 5.03 5.03
Total: -1.00 -35.45 333.49 -6.35 -41.79
By element:
Atomic # 1 Polarization: 0.76 SS G_CDS: -4.32 Total: -3.56 kcal
Atomic # 6 Polarization: 15.59 SS G_CDS: -0.39 Total: 15.20 kcal
Atomic # 7 Polarization: -49.42 SS G_CDS: 0.68 Total: -48.75 kcal
Atomic # 8 Polarization: -20.73 SS G_CDS: 0.18 Total: -20.55 kcal
Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal
Atomic # 16 Polarization: -2.24 SS G_CDS: -2.50 Total: -4.74 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -35.45 -6.35 -41.79 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000049377394.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.337 kcal
(2) G-P(sol) polarization free energy of solvation -35.445 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.109 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.457 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds