Wall clock time and date at job start Tue Mar 31 2020 03:17:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13601 * 1
3 3 C 1.47206 * 179.97438 * 2 1
4 4 N 1.46500 * 109.46855 * 227.23072 * 3 2 1
5 5 C 1.36775 * 120.00120 * 263.20267 * 4 3 2
6 6 H 1.08001 * 120.00490 * 214.84313 * 5 4 3
7 7 C 1.39122 * 120.00002 * 34.83773 * 5 4 3
8 8 N 1.31313 * 119.99546 * 6.35869 * 7 5 4
9 9 Si 1.86804 * 119.99974 * 186.35798 * 7 5 4
10 10 H 1.48490 * 109.47272 * 60.00084 * 9 7 5
11 11 H 1.48500 * 109.46530 * 180.02562 * 9 7 5
12 12 H 1.48496 * 109.46871 * 299.99938 * 9 7 5
13 13 C 1.34783 * 119.99942 * 83.47630 * 4 3 2
14 14 O 1.21548 * 120.00089 * 354.90628 * 13 4 3
15 15 C 1.48184 * 119.99732 * 174.90078 * 13 4 3
16 16 C 1.41983 * 126.85202 * 174.93697 * 15 13 4
17 17 C 1.36676 * 103.81729 * 179.85957 * 16 15 13
18 18 C 1.47858 * 126.80454 * 180.12989 * 17 16 15
19 19 C 1.39561 * 120.14425 * 0.02562 * 18 17 16
20 20 C 1.37965 * 119.85189 * 179.72703 * 19 18 17
21 21 C 1.38352 * 120.14471 * 0.55049 * 20 19 18
22 22 C 1.38358 * 120.28974 * 359.72424 * 21 20 19
23 23 C 1.37968 * 120.14409 * 0.02562 * 22 21 20
24 24 O 1.34476 * 106.38660 * 0.39584 * 17 16 15
25 25 N 1.20875 * 111.75656 * 359.73174 * 24 17 16
26 26 H 1.08989 * 109.47178 * 107.22712 * 3 2 1
27 27 H 1.09000 * 109.46596 * 347.22784 * 3 2 1
28 28 H 0.97009 * 119.99622 * 179.97438 * 8 7 5
29 29 H 1.07999 * 128.09320 * 359.97438 * 16 15 13
30 30 H 1.07994 * 120.06994 * 359.97438 * 19 18 17
31 31 H 1.08001 * 119.92499 * 180.29782 * 20 19 18
32 32 H 1.07994 * 119.85618 * 179.69924 * 21 20 19
33 33 H 1.08004 * 119.92817 * 180.02562 * 22 21 20
34 34 H 1.07998 * 120.07363 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6081 0.0007 0.0000
4 7 3.0959 0.9388 1.0140
5 6 3.4555 2.2085 0.6543
6 1 4.2764 2.6998 1.1554
7 6 2.7637 2.8672 -0.3571
8 7 1.6897 2.3223 -0.8804
9 14 3.3628 4.5268 -0.9707
10 1 4.7395 4.3879 -1.5094
11 1 2.4580 5.0141 -2.0427
12 1 3.3664 5.4979 0.1527
13 6 3.1957 0.5490 2.3003
14 8 2.7947 -0.5484 2.6357
15 6 3.7943 1.4582 3.3057
16 6 3.8805 1.2407 4.7061
17 6 4.5128 2.3594 5.1718
18 6 4.8643 2.6581 6.5766
19 6 4.5488 1.7483 7.5867
20 6 4.8847 2.0306 8.8948
21 6 5.5226 3.2177 9.2076
22 6 5.8331 4.1266 8.2116
23 6 5.5074 3.8541 6.8989
24 8 4.7465 3.1371 4.1000
25 7 4.3450 2.6270 3.0803
26 1 2.9712 0.3051 -0.9815
27 1 2.9718 -1.0014 0.2272
28 1 1.2071 2.7818 -1.5855
29 1 3.5303 0.3895 5.2710
30 1 4.0465 0.8235 7.3444
31 1 4.6454 1.3251 9.6767
32 1 5.7790 3.4361 10.2336
33 1 6.3316 5.0513 8.4623
34 1 5.7506 4.5641 6.1224
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000065625952.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:17:50
Heat of formation + Delta-G solvation = 99.849784 kcal
Electronic energy + Delta-G solvation = -22509.437773 eV
Core-core repulsion = 18990.779576 eV
Total energy + Delta-G solvation = -3518.658197 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 297.090 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-44.41595 -39.17455 -38.81855 -35.64641 -34.43513 -33.58658 -32.86941 -31.76231
-31.10350 -29.40396 -27.82934 -25.26900 -23.70040 -23.58124 -22.24404 -21.53838
-19.45400 -18.54747 -17.37062 -17.19797 -16.48300 -16.45344 -15.96588 -15.11347
-14.95102 -14.65589 -14.42925 -13.77541 -13.53491 -13.50638 -13.11943 -13.04782
-13.02953 -12.69858 -11.96799 -11.63590 -11.54627 -11.44242 -11.20673 -11.18600
-11.12059 -10.55173 -10.31847 -10.22967 -10.16767 -9.77175 -9.37627 -9.13839
-9.06422 -8.26920 -8.06508 -6.60291 -4.27422 0.67283 1.22621 1.96309
2.35179 3.10898 3.15374 3.17005 3.24128 3.60589 3.71013 4.03197
4.07534 4.24696 4.46386 4.60445 4.76507 4.81723 4.84523 4.92292
5.09719 5.23764 5.35760 5.43247 5.51476 5.63094 5.72554 5.86754
5.94208 6.21030 6.29940 6.32161 6.35354 6.39930 6.48126 6.74789
7.36549 7.45103 8.19903 8.58562 8.85333 8.96410 9.11009 9.48937
10.43997
Molecular weight = 297.09amu
Principal moments of inertia in cm(-1)
A = 0.019682 B = 0.004252 C = 0.003623
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1422.309316 B = 6582.967519 C = 7727.202758
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.478 5.478
2 C 0.258 3.742
3 C 0.235 3.765
4 N -0.416 5.416
5 C -0.343 4.343
6 H 0.127 0.873
7 C 0.044 3.956
8 N -0.864 5.864
9 Si 0.932 3.068
10 H -0.268 1.268
11 H -0.283 1.283
12 H -0.269 1.269
13 C 0.532 3.468
14 O -0.585 6.585
15 C 0.011 3.989
16 C -0.167 4.167
17 C -0.022 4.022
18 C -0.006 4.006
19 C -0.095 4.095
20 C -0.118 4.118
21 C -0.116 4.116
22 C -0.119 4.119
23 C -0.099 4.099
24 O 0.108 5.892
25 N -0.300 5.300
26 H 0.118 0.882
27 H 0.090 0.910
28 H 0.278 0.722
29 H 0.174 0.826
30 H 0.130 0.870
31 H 0.127 0.873
32 H 0.123 0.877
33 H 0.126 0.874
34 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.209 2.617 13.981 17.508
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.158 5.158
2 C -0.060 4.060
3 C 0.109 3.891
4 N -0.134 5.134
5 C -0.471 4.471
6 H 0.144 0.856
7 C -0.163 4.163
8 N -0.501 5.501
9 Si 0.757 3.243
10 H -0.193 1.193
11 H -0.208 1.208
12 H -0.194 1.194
13 C 0.321 3.679
14 O -0.469 6.469
15 C -0.146 4.146
16 C -0.189 4.189
17 C -0.085 4.085
18 C -0.007 4.007
19 C -0.114 4.114
20 C -0.136 4.136
21 C -0.135 4.135
22 C -0.137 4.137
23 C -0.117 4.117
24 O 0.034 5.966
25 N -0.002 5.002
26 H 0.136 0.864
27 H 0.108 0.892
28 H 0.089 0.911
29 H 0.192 0.808
30 H 0.148 0.852
31 H 0.145 0.855
32 H 0.141 0.859
33 H 0.144 0.856
34 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 8.360 2.795 12.801 15.542
hybrid contribution 0.283 0.513 0.043 0.587
sum 8.642 3.307 12.844 15.830
Atomic orbital electron populations
1.80820 1.13623 1.11934 1.09423 1.28877 0.95073 0.90114 0.91970
1.18540 0.82086 0.93610 0.94906 1.43358 1.54180 1.12139 1.03763
1.20310 1.16671 0.89375 1.20782 0.85595 1.25574 0.94030 0.99694
0.96997 1.69610 1.15332 1.39439 1.25687 0.85895 0.78663 0.81154
0.78556 1.19337 1.20848 1.19373 1.17006 0.83488 0.86099 0.81340
1.90677 1.54232 1.22551 1.79404 1.23257 1.03164 0.93804 0.94423
1.22527 1.03131 0.99944 0.93267 1.22336 1.03966 0.92449 0.89716
1.17658 1.00219 0.95735 0.87133 1.21170 0.99197 0.98995 0.92036
1.21054 0.99109 0.97455 0.95980 1.21274 0.98541 0.94219 0.99422
1.21093 1.00315 0.99730 0.92547 1.21335 0.97276 0.95958 0.97153
1.84946 1.59529 1.41147 1.10934 1.74566 1.12089 1.09853 1.03711
0.86376 0.89171 0.91074 0.80821 0.85165 0.85468 0.85897 0.85574
0.84957
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.48 -12.53 18.54 42.15 0.78 -11.75 16
2 C 0.26 6.35 13.03 -20.76 -0.27 6.08 16
3 C 0.23 5.15 5.04 -6.83 -0.03 5.12 16
4 N -0.42 -10.04 2.56 -118.90 -0.30 -10.34 16
5 C -0.34 -8.39 8.49 -15.02 -0.13 -8.52 16
6 H 0.13 3.05 5.17 -52.49 -0.27 2.78 16
7 C 0.04 1.08 5.14 -17.45 -0.09 0.99 16
8 N -0.86 -22.04 9.44 55.50 0.52 -21.52 16
9 Si 0.93 19.37 29.56 -169.99 -5.02 14.35 16
10 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16
11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16
12 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16
13 C 0.53 12.82 7.57 -12.17 -0.09 12.73 16
14 O -0.58 -14.76 16.66 5.32 0.09 -14.68 16
15 C 0.01 0.24 6.89 -82.64 -0.57 -0.33 16
16 C -0.17 -2.92 10.34 -38.71 -0.40 -3.32 16
17 C -0.02 -0.35 7.15 -36.21 -0.26 -0.61 16
18 C -0.01 -0.08 5.87 -104.97 -0.62 -0.69 16
19 C -0.10 -1.03 9.58 -39.19 -0.38 -1.40 16
20 C -0.12 -1.04 10.03 -39.64 -0.40 -1.44 16
21 C -0.12 -0.96 10.04 -39.50 -0.40 -1.35 16
22 C -0.12 -1.05 10.03 -39.64 -0.40 -1.45 16
23 C -0.10 -1.08 9.73 -39.19 -0.38 -1.46 16
24 O 0.11 1.92 11.01 16.01 0.18 2.09 16
25 N -0.30 -6.27 8.76 33.35 0.29 -5.98 16
26 H 0.12 2.46 7.20 -51.94 -0.37 2.09 16
27 H 0.09 1.74 7.70 -51.93 -0.40 1.34 16
28 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16
29 H 0.17 2.65 7.46 -52.49 -0.39 2.26 16
30 H 0.13 1.27 7.15 -52.49 -0.38 0.89 16
31 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16
32 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16
33 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16
34 H 0.13 1.34 7.96 -52.49 -0.42 0.93 16
LS Contribution 311.91 15.07 4.70 4.70
Total: -1.00 -30.80 311.91 -5.81 -36.61
By element:
Atomic # 1 Polarization: 4.81 SS G_CDS: -2.63 Total: 2.17 kcal
Atomic # 6 Polarization: 8.74 SS G_CDS: -4.41 Total: 4.33 kcal
Atomic # 7 Polarization: -50.88 SS G_CDS: 1.29 Total: -49.59 kcal
Atomic # 8 Polarization: -12.85 SS G_CDS: 0.27 Total: -12.58 kcal
Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal
Total LS contribution 4.70 Total: 4.70 kcal
Total: -30.80 -5.81 -36.61 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000065625952.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 136.460 kcal
(2) G-P(sol) polarization free energy of solvation -30.803 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.656 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.610 kcal
(6) G-S(sol) free energy of system = (1) + (5) 99.850 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds