Wall clock time and date at job start Tue Mar 31 2020 03:17:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13601 * 1
3 3 C 1.47206 * 179.97438 * 2 1
4 4 N 1.46500 * 109.46855 * 227.23072 * 3 2 1
5 5 C 1.36775 * 120.00120 * 263.20267 * 4 3 2
6 6 H 1.08001 * 120.00490 * 214.84313 * 5 4 3
7 7 C 1.39122 * 120.00002 * 34.83773 * 5 4 3
8 8 N 1.31313 * 119.99546 * 6.35869 * 7 5 4
9 9 Si 1.86804 * 119.99974 * 186.35798 * 7 5 4
10 10 H 1.48490 * 109.47272 * 60.00084 * 9 7 5
11 11 H 1.48500 * 109.46530 * 180.02562 * 9 7 5
12 12 H 1.48496 * 109.46871 * 299.99938 * 9 7 5
13 13 C 1.34783 * 119.99942 * 83.47630 * 4 3 2
14 14 O 1.21548 * 120.00089 * 354.90628 * 13 4 3
15 15 C 1.48184 * 119.99732 * 174.90078 * 13 4 3
16 16 C 1.41983 * 126.85202 * 174.93697 * 15 13 4
17 17 C 1.36676 * 103.81729 * 179.85957 * 16 15 13
18 18 C 1.47858 * 126.80454 * 180.12989 * 17 16 15
19 19 C 1.39561 * 120.14425 * 0.02562 * 18 17 16
20 20 C 1.37965 * 119.85189 * 179.72703 * 19 18 17
21 21 C 1.38352 * 120.14471 * 0.55049 * 20 19 18
22 22 C 1.38358 * 120.28974 * 359.72424 * 21 20 19
23 23 C 1.37968 * 120.14409 * 0.02562 * 22 21 20
24 24 O 1.34476 * 106.38660 * 0.39584 * 17 16 15
25 25 N 1.20875 * 111.75656 * 359.73174 * 24 17 16
26 26 H 1.08989 * 109.47178 * 107.22712 * 3 2 1
27 27 H 1.09000 * 109.46596 * 347.22784 * 3 2 1
28 28 H 0.97009 * 119.99622 * 179.97438 * 8 7 5
29 29 H 1.07999 * 128.09320 * 359.97438 * 16 15 13
30 30 H 1.07994 * 120.06994 * 359.97438 * 19 18 17
31 31 H 1.08001 * 119.92499 * 180.29782 * 20 19 18
32 32 H 1.07994 * 119.85618 * 179.69924 * 21 20 19
33 33 H 1.08004 * 119.92817 * 180.02562 * 22 21 20
34 34 H 1.07998 * 120.07363 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6081 0.0007 0.0000
4 7 3.0959 0.9388 1.0140
5 6 3.4555 2.2085 0.6543
6 1 4.2764 2.6998 1.1554
7 6 2.7637 2.8672 -0.3571
8 7 1.6897 2.3223 -0.8804
9 14 3.3628 4.5268 -0.9707
10 1 4.7395 4.3879 -1.5094
11 1 2.4580 5.0141 -2.0427
12 1 3.3664 5.4979 0.1527
13 6 3.1957 0.5490 2.3003
14 8 2.7947 -0.5484 2.6357
15 6 3.7943 1.4582 3.3057
16 6 3.8805 1.2407 4.7061
17 6 4.5128 2.3594 5.1718
18 6 4.8643 2.6581 6.5766
19 6 4.5488 1.7483 7.5867
20 6 4.8847 2.0306 8.8948
21 6 5.5226 3.2177 9.2076
22 6 5.8331 4.1266 8.2116
23 6 5.5074 3.8541 6.8989
24 8 4.7465 3.1371 4.1000
25 7 4.3450 2.6270 3.0803
26 1 2.9712 0.3051 -0.9815
27 1 2.9718 -1.0014 0.2272
28 1 1.2071 2.7818 -1.5855
29 1 3.5303 0.3895 5.2710
30 1 4.0465 0.8235 7.3444
31 1 4.6454 1.3251 9.6767
32 1 5.7790 3.4361 10.2336
33 1 6.3316 5.0513 8.4623
34 1 5.7506 4.5641 6.1224
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000065625952.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:17:50
Heat of formation + Delta-G solvation = 83.029850 kcal
Electronic energy + Delta-G solvation = -22510.167140 eV
Core-core repulsion = 18990.779576 eV
Total energy + Delta-G solvation = -3519.387565 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 297.090 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-45.91221 -40.67023 -39.93918 -37.55003 -36.38195 -34.98189 -34.13704 -33.60147
-31.85047 -30.51544 -29.60006 -27.10110 -25.17055 -24.65293 -23.29975 -22.72930
-21.08227 -20.04462 -18.91371 -18.67865 -18.09022 -18.02919 -17.03436 -16.59409
-16.38424 -15.94612 -15.72271 -15.38300 -15.06276 -14.71998 -14.57372 -14.24492
-14.17010 -13.86907 -13.82764 -13.47264 -13.20609 -13.04197 -12.87958 -12.33327
-12.26026 -12.09312 -11.96112 -11.86294 -11.36179 -11.24315 -11.19111 -10.92664
-9.95173 -9.86724 -9.30094 -8.45997 -6.18759 -0.31740 0.40245 0.50111
1.20200 1.44584 1.46745 1.53940 1.75855 2.01053 2.23231 2.29325
2.35390 2.75161 2.92959 2.98319 3.27795 3.59653 3.62166 3.96436
4.10257 4.12632 4.24332 4.29000 4.39471 4.56430 4.62289 4.71244
4.72297 4.87747 5.03025 5.16350 5.47383 5.53754 5.54772 5.60884
5.61976 6.04112 6.32764 6.89293 7.01367 7.12332 7.35192 7.62784
8.57425
Molecular weight = 297.09amu
Principal moments of inertia in cm(-1)
A = 0.019682 B = 0.004252 C = 0.003623
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1422.309316 B = 6582.967519 C = 7727.202758
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.512 5.512
2 C 0.267 3.733
3 C 0.233 3.767
4 N -0.428 5.428
5 C -0.353 4.353
6 H 0.128 0.872
7 C 0.008 3.992
8 N -0.892 5.892
9 Si 0.990 3.010
10 H -0.254 1.254
11 H -0.284 1.284
12 H -0.274 1.274
13 C 0.526 3.474
14 O -0.604 6.604
15 C -0.020 4.020
16 C -0.181 4.181
17 C 0.006 3.994
18 C -0.041 4.041
19 C -0.101 4.101
20 C -0.120 4.120
21 C -0.104 4.104
22 C -0.121 4.121
23 C -0.106 4.106
24 O 0.117 5.883
25 N -0.324 5.324
26 H 0.129 0.871
27 H 0.116 0.884
28 H 0.275 0.725
29 H 0.191 0.809
30 H 0.135 0.865
31 H 0.155 0.845
32 H 0.156 0.844
33 H 0.153 0.847
34 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.865 3.758 16.573 20.726
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.194 5.194
2 C -0.051 4.051
3 C 0.108 3.892
4 N -0.146 5.146
5 C -0.481 4.481
6 H 0.145 0.855
7 C -0.195 4.195
8 N -0.529 5.529
9 Si 0.814 3.186
10 H -0.178 1.178
11 H -0.210 1.210
12 H -0.200 1.200
13 C 0.315 3.685
14 O -0.490 6.490
15 C -0.176 4.176
16 C -0.204 4.204
17 C -0.056 4.056
18 C -0.042 4.042
19 C -0.119 4.119
20 C -0.138 4.138
21 C -0.122 4.122
22 C -0.138 4.138
23 C -0.125 4.125
24 O 0.042 5.958
25 N -0.025 5.025
26 H 0.146 0.854
27 H 0.134 0.866
28 H 0.085 0.915
29 H 0.208 0.792
30 H 0.153 0.847
31 H 0.172 0.828
32 H 0.174 0.826
33 H 0.171 0.829
34 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges 10.027 3.925 15.372 18.768
hybrid contribution -0.139 0.195 -0.470 0.528
sum 9.888 4.120 14.901 18.352
Atomic orbital electron populations
1.80797 1.14710 1.13214 1.10642 1.29432 0.95688 0.89042 0.90906
1.18802 0.80535 0.94716 0.95193 1.43549 1.54343 1.12505 1.04208
1.20496 1.16896 0.89800 1.20921 0.85549 1.26284 0.93930 1.02425
0.96911 1.69707 1.16379 1.40570 1.26233 0.85013 0.78785 0.77228
0.77623 1.17792 1.20978 1.19975 1.17422 0.83038 0.86242 0.81786
1.90636 1.55018 1.23396 1.79908 1.23195 1.04692 0.94220 0.95505
1.22674 1.04512 1.01432 0.91737 1.22841 1.01414 0.90924 0.90446
1.17756 1.03282 0.97685 0.85462 1.21375 0.99053 0.98853 0.92625
1.21419 0.98421 0.98317 0.95598 1.21747 0.96332 0.93235 1.00885
1.21438 0.99836 1.00949 0.91599 1.21501 0.97091 0.95356 0.98516
1.84883 1.58827 1.40988 1.11133 1.74497 1.12872 1.09944 1.05145
0.85358 0.86618 0.91491 0.79174 0.84737 0.82776 0.82631 0.82916
0.84862
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.51 -27.42 18.54 20.01 0.37 -27.04 16
2 C 0.27 13.37 13.03 89.44 1.17 14.53 16
3 C 0.23 10.35 5.04 84.58 0.43 10.77 16
4 N -0.43 -20.97 2.56 -648.35 -1.66 -22.63 16
5 C -0.35 -17.48 8.49 84.13 0.71 -16.76 16
6 H 0.13 6.19 5.17 -2.91 -0.02 6.18 16
7 C 0.01 0.40 5.14 84.98 0.44 0.84 16
8 N -0.89 -46.02 9.44 21.69 0.20 -45.82 16
9 Si 0.99 39.71 29.56 68.60 2.03 41.74 16
10 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16
11 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16
12 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16
13 C 0.53 25.84 7.57 86.89 0.66 26.50 16
14 O -0.60 -31.03 16.66 -3.87 -0.06 -31.09 16
15 C -0.02 -0.85 6.89 42.82 0.29 -0.56 16
16 C -0.18 -6.38 10.34 22.83 0.24 -6.14 16
17 C 0.01 0.20 7.15 24.45 0.17 0.38 16
18 C -0.04 -0.97 5.87 -20.09 -0.12 -1.08 16
19 C -0.10 -1.95 9.58 22.52 0.22 -1.73 16
20 C -0.12 -1.66 10.03 22.23 0.22 -1.44 16
21 C -0.10 -1.24 10.04 22.33 0.22 -1.02 16
22 C -0.12 -1.69 10.03 22.23 0.22 -1.47 16
23 C -0.11 -2.10 9.73 22.53 0.22 -1.88 16
24 O 0.12 4.17 11.01 67.49 0.74 4.91 16
25 N -0.32 -13.72 8.76 -48.99 -0.43 -14.15 16
26 H 0.13 5.39 7.20 -2.39 -0.02 5.37 16
27 H 0.12 4.48 7.70 -2.39 -0.02 4.46 16
28 H 0.27 13.88 8.31 -92.70 -0.77 13.11 16
29 H 0.19 5.80 7.46 -2.91 -0.02 5.78 16
30 H 0.13 2.39 7.15 -2.91 -0.02 2.37 16
31 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16
32 H 0.16 0.89 8.06 -2.91 -0.02 0.86 16
33 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16
34 H 0.13 2.51 7.96 -2.91 -0.02 2.49 16
Total: -1.00 -67.36 311.91 7.45 -59.90
By element:
Atomic # 1 Polarization: 12.09 SS G_CDS: 1.16 Total: 13.25 kcal
Atomic # 6 Polarization: 15.84 SS G_CDS: 5.09 Total: 20.93 kcal
Atomic # 7 Polarization: -108.13 SS G_CDS: -1.51 Total: -109.64 kcal
Atomic # 8 Polarization: -26.86 SS G_CDS: 0.68 Total: -26.18 kcal
Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal
Total: -67.36 7.45 -59.90 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000065625952.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 142.932 kcal
(2) G-P(sol) polarization free energy of solvation -67.356 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.576 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.454 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.902 kcal
(6) G-S(sol) free energy of system = (1) + (5) 83.030 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds