Wall clock time and date at job start Tue Mar 31 2020 03:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47665 * 2 1 4 4 C 1.50707 * 109.47178 * 119.99960 * 2 1 3 5 5 O 1.21276 * 119.99913 * 102.96324 * 4 2 1 6 6 N 1.34769 * 119.99834 * 282.97066 * 4 2 1 7 7 C 1.37138 * 120.00166 * 5.96691 * 6 4 2 8 8 H 1.08002 * 120.00322 * 298.21552 * 7 6 4 9 9 C 1.38894 * 120.00033 * 118.21526 * 7 6 4 10 10 N 1.31417 * 119.99762 * 4.29883 * 9 7 6 11 11 Si 1.86804 * 120.00010 * 184.29537 * 9 7 6 12 12 H 1.48496 * 109.46877 * 60.00314 * 11 9 7 13 13 H 1.48502 * 109.46885 * 180.02562 * 11 9 7 14 14 H 1.48491 * 109.47142 * 300.00199 * 11 9 7 15 15 C 1.39788 * 119.99922 * 185.97626 * 6 4 2 16 16 C 1.38955 * 120.07902 * 7.72209 * 15 6 4 17 17 C 1.38079 * 119.92252 * 179.74689 * 16 15 6 18 18 C 1.38309 * 120.07856 * 0.53084 * 17 16 15 19 19 C 1.38309 * 120.15293 * 359.72576 * 18 17 16 20 20 C 1.38077 * 120.08161 * 0.02562 * 19 18 17 21 21 S 1.81407 * 109.47425 * 239.99798 * 2 1 3 22 22 C 1.81399 * 101.91845 * 59.99947 * 21 2 1 23 23 O 1.42096 * 108.57991 * 174.48928 * 21 2 1 24 24 O 1.42103 * 108.57612 * 305.51757 * 21 2 1 25 25 H 1.08992 * 109.47386 * 294.98088 * 1 2 3 26 26 H 1.09004 * 109.46460 * 54.98085 * 1 2 3 27 27 H 1.08998 * 109.47265 * 174.97722 * 1 2 3 28 28 H 0.97003 * 120.00215 * 184.99789 * 10 9 7 29 29 H 1.07998 * 120.04054 * 0.02562 * 16 15 6 30 30 H 1.08001 * 119.96620 * 180.25588 * 17 16 15 31 31 H 1.07999 * 119.92356 * 179.70187 * 18 17 16 32 32 H 1.08008 * 119.96044 * 180.02562 * 19 18 17 33 33 H 1.07999 * 120.04352 * 179.97438 * 20 19 18 34 34 H 1.08999 * 109.46942 * 60.00493 * 22 21 2 35 35 H 1.09004 * 109.46851 * 179.97438 * 22 21 2 36 36 H 1.08999 * 109.47602 * 299.99963 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.4566 -1.8434 1.1458 6 7 2.0100 -0.0867 2.4250 7 6 1.4192 1.1451 2.5444 8 1 1.8043 1.9852 1.9855 9 6 0.3255 1.3123 3.3841 10 7 -0.0908 0.3121 4.1278 11 14 -0.5536 2.9590 3.4561 12 1 -1.0798 3.2985 2.1097 13 1 -1.6787 2.8776 4.4218 14 1 0.3994 4.0101 3.8946 15 6 2.5891 -0.6954 3.5422 16 6 3.3265 -1.8638 3.3948 17 6 3.9016 -2.4594 4.4998 18 6 3.7352 -1.9004 5.7539 19 6 2.9974 -0.7403 5.9051 20 6 2.4238 -0.1365 4.8038 21 16 2.1348 -0.8552 -1.4811 22 6 1.4230 0.1514 -2.8118 23 8 3.5497 -0.7331 -1.5284 24 8 1.5479 -2.1485 -1.5284 25 1 -0.3634 0.4340 0.9314 26 1 -0.3632 0.5898 -0.8417 27 1 -0.3634 -1.0237 -0.0900 28 1 -0.8970 0.4055 4.6592 29 1 3.4535 -2.3032 2.4164 30 1 4.4784 -3.3654 4.3855 31 1 4.1821 -2.3710 6.6172 32 1 2.8698 -0.3062 6.8858 33 1 1.8475 0.7691 4.9226 34 1 1.7895 1.1746 -2.7291 35 1 1.7161 -0.2623 -3.7768 36 1 0.3361 0.1469 -2.7292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171932889.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:33 Heat of formation + Delta-G solvation = -51.364940 kcal Electronic energy + Delta-G solvation = -22892.215044 eV Core-core repulsion = 19470.150884 eV Total energy + Delta-G solvation = -3422.064160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.93558 -37.41810 -36.62235 -35.62751 -35.19849 -32.99916 -32.12222 -29.68188 -29.42804 -28.55058 -25.44375 -24.33929 -21.95954 -21.23651 -19.77336 -18.52797 -17.84366 -16.88792 -15.99578 -15.80832 -15.62870 -15.46697 -15.18378 -14.49806 -14.34741 -13.70134 -13.37127 -13.16059 -13.08520 -12.91790 -12.62977 -12.43812 -12.11342 -11.95747 -11.68758 -11.61776 -11.50436 -11.47369 -11.38267 -11.08262 -10.88693 -10.74471 -10.59656 -10.05302 -10.01157 -9.29054 -8.87275 -8.49070 -7.81410 -6.95578 -6.42679 -4.72670 0.22980 2.31623 2.55107 2.93262 3.00469 3.03113 3.04323 3.47667 3.75603 3.91480 4.28595 4.37101 4.60110 4.85179 4.90280 5.07482 5.24687 5.34723 5.51756 5.62138 5.84710 5.86776 6.01945 6.08706 6.14576 6.66173 6.67972 6.71211 6.85420 7.10112 7.12369 7.48246 7.57157 7.65170 7.72432 7.96886 8.29519 8.66484 8.98608 9.43183 10.34755 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.014065 B = 0.007671 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.348607 B = 3649.033422 C = 5260.584659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.575 4.575 3 H 0.153 0.847 4 C 0.523 3.477 5 O -0.554 6.554 6 N -0.372 5.372 7 C -0.372 4.372 8 H 0.093 0.907 9 C 0.058 3.942 10 N -0.839 5.839 11 Si 0.914 3.086 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.268 1.268 15 C 0.174 3.826 16 C -0.181 4.181 17 C -0.122 4.122 18 C -0.166 4.166 19 C -0.128 4.128 20 C -0.088 4.088 21 S 2.441 3.559 22 C -0.666 4.666 23 O -0.939 6.939 24 O -0.923 6.923 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.277 0.723 29 H 0.166 0.834 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.668 4.145 -6.286 7.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.685 4.685 3 H 0.170 0.830 4 C 0.312 3.688 5 O -0.439 6.439 6 N -0.079 5.079 7 C -0.499 4.499 8 H 0.111 0.889 9 C -0.152 4.152 10 N -0.470 5.470 11 Si 0.738 3.262 12 H -0.192 1.192 13 H -0.205 1.205 14 H -0.193 1.193 15 C 0.078 3.922 16 C -0.201 4.201 17 C -0.141 4.141 18 C -0.186 4.186 19 C -0.147 4.147 20 C -0.109 4.109 21 S 2.619 3.381 22 C -0.814 4.814 23 O -0.936 6.936 24 O -0.920 6.920 25 H 0.123 0.877 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.182 0.818 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.157 0.843 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.105 2.855 -6.242 6.865 hybrid contribution -1.210 1.714 0.380 2.133 sum -1.315 4.570 -5.862 7.548 Atomic orbital electron populations 1.21573 0.88294 1.03603 1.05827 1.30251 1.08781 1.14757 1.14748 0.82969 1.19444 0.79611 0.84868 0.84899 1.90456 1.49820 1.17918 1.85660 1.40731 1.45987 1.16928 1.04274 1.19249 1.13434 0.86096 1.31162 0.88900 1.25700 0.96423 0.98709 0.94411 1.70033 1.21755 1.31633 1.23614 0.86207 0.79295 0.81784 0.78873 1.19163 1.20472 1.19253 1.18302 0.92608 0.93127 0.88144 1.22425 0.99195 0.96700 1.01764 1.20829 1.00932 0.99598 0.92757 1.20823 1.03142 0.97891 0.96696 1.20797 0.99505 0.96651 0.97755 1.21092 0.97706 1.01972 0.90110 1.07549 0.75900 0.76830 0.77788 1.30417 1.14400 1.16805 1.19780 1.93548 1.27241 1.86953 1.85828 1.93551 1.79128 1.33956 1.85331 0.87653 0.91601 0.90953 0.91211 0.81760 0.87533 0.88060 0.87689 0.84331 0.85409 0.85551 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.75 37.16 0.33 -1.79 16 2 C -0.57 -10.03 2.40 -27.88 -0.07 -10.10 16 3 H 0.15 2.21 7.37 -51.92 -0.38 1.83 16 4 C 0.52 12.14 6.77 -10.99 -0.07 12.07 16 5 O -0.55 -14.11 12.14 -2.60 -0.03 -14.14 16 6 N -0.37 -9.03 2.62 -58.98 -0.15 -9.19 16 7 C -0.37 -8.47 6.18 -14.94 -0.09 -8.56 16 8 H 0.09 1.96 7.43 -52.49 -0.39 1.57 16 9 C 0.06 1.29 3.61 -17.49 -0.06 1.23 16 10 N -0.84 -20.44 10.82 55.49 0.60 -19.84 16 11 Si 0.91 17.12 29.56 -169.99 -5.02 12.10 16 12 H -0.27 -4.77 7.11 56.52 0.40 -4.36 16 13 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 14 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 15 C 0.17 4.34 6.08 -83.69 -0.51 3.84 16 16 C -0.18 -4.37 8.97 -39.37 -0.35 -4.72 16 17 C -0.12 -2.58 10.04 -39.61 -0.40 -2.98 16 18 C -0.17 -3.30 10.04 -39.53 -0.40 -3.70 16 19 C -0.13 -2.67 10.04 -39.61 -0.40 -3.07 16 20 C -0.09 -2.09 7.82 -39.37 -0.31 -2.39 16 21 S 2.44 39.53 4.27 -107.50 -0.46 39.07 16 22 C -0.67 -6.43 10.18 101.05 1.03 -5.40 16 23 O -0.94 -18.26 18.10 -57.83 -1.05 -19.30 16 24 O -0.92 -18.20 17.32 -62.46 -1.08 -19.28 16 25 H 0.10 1.91 6.31 -51.93 -0.33 1.58 16 26 H 0.07 0.70 6.83 -51.93 -0.35 0.35 16 27 H 0.07 1.17 7.90 -51.93 -0.41 0.76 16 28 H 0.28 6.42 8.32 -40.82 -0.34 6.08 16 29 H 0.17 4.14 4.73 -55.15 -0.26 3.88 16 30 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 31 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 33 H 0.14 3.36 5.12 -52.49 -0.27 3.09 16 34 H 0.13 0.95 8.14 -51.92 -0.42 0.52 16 35 H 0.13 1.04 8.14 -51.92 -0.42 0.61 16 36 H 0.13 1.00 7.00 -51.92 -0.36 0.64 16 LS Contribution 308.49 15.07 4.65 4.65 Total: -1.00 -32.41 308.49 -7.86 -40.27 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -4.01 Total: 11.24 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -1.31 Total: -25.58 kcal Atomic # 7 Polarization: -29.47 SS G_CDS: 0.45 Total: -29.03 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -2.16 Total: -52.73 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.02 Total: 12.10 kcal Atomic # 16 Polarization: 39.53 SS G_CDS: -0.46 Total: 39.07 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.41 -7.86 -40.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171932889.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.093 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds