Wall clock time and date at job start Tue Mar 31 2020 03:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47665 * 2 1 4 4 C 1.50707 * 109.47178 * 119.99960 * 2 1 3 5 5 O 1.21276 * 119.99913 * 102.96324 * 4 2 1 6 6 N 1.34769 * 119.99834 * 282.97066 * 4 2 1 7 7 C 1.37138 * 120.00166 * 5.96691 * 6 4 2 8 8 H 1.08002 * 120.00322 * 298.21552 * 7 6 4 9 9 C 1.38894 * 120.00033 * 118.21526 * 7 6 4 10 10 N 1.31417 * 119.99762 * 4.29883 * 9 7 6 11 11 Si 1.86804 * 120.00010 * 184.29537 * 9 7 6 12 12 H 1.48496 * 109.46877 * 60.00314 * 11 9 7 13 13 H 1.48502 * 109.46885 * 180.02562 * 11 9 7 14 14 H 1.48491 * 109.47142 * 300.00199 * 11 9 7 15 15 C 1.39788 * 119.99922 * 185.97626 * 6 4 2 16 16 C 1.38955 * 120.07902 * 7.72209 * 15 6 4 17 17 C 1.38079 * 119.92252 * 179.74689 * 16 15 6 18 18 C 1.38309 * 120.07856 * 0.53084 * 17 16 15 19 19 C 1.38309 * 120.15293 * 359.72576 * 18 17 16 20 20 C 1.38077 * 120.08161 * 0.02562 * 19 18 17 21 21 S 1.81407 * 109.47425 * 239.99798 * 2 1 3 22 22 C 1.81399 * 101.91845 * 59.99947 * 21 2 1 23 23 O 1.42096 * 108.57991 * 174.48928 * 21 2 1 24 24 O 1.42103 * 108.57612 * 305.51757 * 21 2 1 25 25 H 1.08992 * 109.47386 * 294.98088 * 1 2 3 26 26 H 1.09004 * 109.46460 * 54.98085 * 1 2 3 27 27 H 1.08998 * 109.47265 * 174.97722 * 1 2 3 28 28 H 0.97003 * 120.00215 * 184.99789 * 10 9 7 29 29 H 1.07998 * 120.04054 * 0.02562 * 16 15 6 30 30 H 1.08001 * 119.96620 * 180.25588 * 17 16 15 31 31 H 1.07999 * 119.92356 * 179.70187 * 18 17 16 32 32 H 1.08008 * 119.96044 * 180.02562 * 19 18 17 33 33 H 1.07999 * 120.04352 * 179.97438 * 20 19 18 34 34 H 1.08999 * 109.46942 * 60.00493 * 22 21 2 35 35 H 1.09004 * 109.46851 * 179.97438 * 22 21 2 36 36 H 1.08999 * 109.47602 * 299.99963 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.4566 -1.8434 1.1458 6 7 2.0100 -0.0867 2.4250 7 6 1.4192 1.1451 2.5444 8 1 1.8043 1.9852 1.9855 9 6 0.3255 1.3123 3.3841 10 7 -0.0908 0.3121 4.1278 11 14 -0.5536 2.9590 3.4561 12 1 -1.0798 3.2985 2.1097 13 1 -1.6787 2.8776 4.4218 14 1 0.3994 4.0101 3.8946 15 6 2.5891 -0.6954 3.5422 16 6 3.3265 -1.8638 3.3948 17 6 3.9016 -2.4594 4.4998 18 6 3.7352 -1.9004 5.7539 19 6 2.9974 -0.7403 5.9051 20 6 2.4238 -0.1365 4.8038 21 16 2.1348 -0.8552 -1.4811 22 6 1.4230 0.1514 -2.8118 23 8 3.5497 -0.7331 -1.5284 24 8 1.5479 -2.1485 -1.5284 25 1 -0.3634 0.4340 0.9314 26 1 -0.3632 0.5898 -0.8417 27 1 -0.3634 -1.0237 -0.0900 28 1 -0.8970 0.4055 4.6592 29 1 3.4535 -2.3032 2.4164 30 1 4.4784 -3.3654 4.3855 31 1 4.1821 -2.3710 6.6172 32 1 2.8698 -0.3062 6.8858 33 1 1.8475 0.7691 4.9226 34 1 1.7895 1.1746 -2.7291 35 1 1.7161 -0.2623 -3.7768 36 1 0.3361 0.1469 -2.7292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171932889.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:33 Heat of formation + Delta-G solvation = -74.762299 kcal Electronic energy + Delta-G solvation = -22893.229630 eV Core-core repulsion = 19470.150884 eV Total energy + Delta-G solvation = -3423.078745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65764 -39.12457 -37.98009 -37.05979 -36.86450 -34.36912 -33.87215 -31.39944 -30.58754 -29.96293 -27.17189 -25.74009 -23.64197 -22.92574 -21.46121 -19.98242 -19.36286 -18.41661 -17.46796 -17.40616 -17.04956 -16.92565 -16.71066 -16.03286 -15.96490 -15.28745 -14.83644 -14.68549 -14.21331 -14.15143 -13.95201 -13.90696 -13.66259 -13.46288 -13.14358 -13.07662 -12.99890 -12.97060 -12.76549 -12.62266 -12.39867 -12.14394 -11.90163 -11.71849 -11.30401 -11.01477 -10.58560 -10.22918 -9.56025 -8.70166 -8.16238 -6.49986 -0.95806 0.59297 0.79130 1.45650 1.49147 1.58067 1.80548 1.87330 2.22855 2.45946 2.90427 3.03931 3.13465 3.31102 3.71250 3.88799 4.14405 4.19239 4.29253 4.30973 4.35939 4.55977 4.70385 4.80320 4.90766 4.98321 4.99441 5.13064 5.37547 5.38805 5.40654 5.77273 5.84943 5.88501 6.01839 6.23256 6.53290 6.93784 7.23299 7.71138 8.65412 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.014065 B = 0.007671 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.348607 B = 3649.033422 C = 5260.584659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.577 4.577 3 H 0.180 0.820 4 C 0.499 3.501 5 O -0.592 6.592 6 N -0.385 5.385 7 C -0.381 4.381 8 H 0.107 0.893 9 C 0.024 3.976 10 N -0.878 5.878 11 Si 0.980 3.020 12 H -0.244 1.244 13 H -0.289 1.289 14 H -0.266 1.266 15 C 0.140 3.860 16 C -0.213 4.213 17 C -0.124 4.124 18 C -0.158 4.158 19 C -0.128 4.128 20 C -0.107 4.107 21 S 2.424 3.576 22 C -0.621 4.621 23 O -0.987 6.987 24 O -0.975 6.975 25 H 0.078 0.922 26 H 0.128 0.872 27 H 0.055 0.945 28 H 0.274 0.726 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.144 0.856 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.165 0.835 35 H 0.152 0.848 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.541 6.508 -7.405 9.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.685 4.685 3 H 0.197 0.803 4 C 0.290 3.710 5 O -0.479 6.479 6 N -0.093 5.093 7 C -0.507 4.507 8 H 0.125 0.875 9 C -0.182 4.182 10 N -0.510 5.510 11 Si 0.802 3.198 12 H -0.167 1.167 13 H -0.214 1.214 14 H -0.191 1.191 15 C 0.044 3.956 16 C -0.233 4.233 17 C -0.143 4.143 18 C -0.176 4.176 19 C -0.146 4.146 20 C -0.127 4.127 21 S 2.609 3.391 22 C -0.775 4.775 23 O -0.984 6.984 24 O -0.972 6.972 25 H 0.097 0.903 26 H 0.147 0.853 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.163 0.837 30 H 0.151 0.849 31 H 0.162 0.838 32 H 0.153 0.847 33 H 0.145 0.855 34 H 0.183 0.817 35 H 0.171 0.829 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.946 5.198 -7.316 9.024 hybrid contribution -0.910 0.970 0.713 1.509 sum -1.856 6.168 -6.603 9.224 Atomic orbital electron populations 1.21657 0.86855 1.03639 1.07104 1.30359 1.09850 1.15565 1.12769 0.80281 1.20463 0.79103 0.85008 0.86426 1.90425 1.51233 1.19744 1.86519 1.41075 1.46092 1.17475 1.04639 1.19640 1.13583 0.86065 1.31412 0.87519 1.26466 0.96639 1.01723 0.93387 1.70183 1.22112 1.34046 1.24695 0.85194 0.77654 0.77370 0.79608 1.16724 1.21449 1.19056 1.18742 0.93545 0.93979 0.89308 1.22462 1.01032 0.97540 1.02216 1.21184 1.00310 1.00217 0.92543 1.21236 1.01908 0.97109 0.97396 1.21197 0.98442 0.96755 0.98231 1.21128 0.98755 1.02200 0.90659 1.07695 0.75220 0.77262 0.78965 1.30075 1.15746 1.16361 1.15340 1.93483 1.30546 1.87764 1.86626 1.93485 1.79403 1.38097 1.86193 0.90293 0.85335 0.92555 0.91559 0.83745 0.84890 0.83830 0.84686 0.85526 0.81672 0.82932 0.81814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 8.75 71.98 0.63 -3.40 16 2 C -0.58 -19.93 2.40 29.85 0.07 -19.86 16 3 H 0.18 4.92 7.37 -2.39 -0.02 4.91 16 4 C 0.50 24.35 6.77 87.66 0.59 24.94 16 5 O -0.59 -32.54 12.14 4.78 0.06 -32.49 16 6 N -0.39 -19.56 2.62 -458.90 -1.20 -20.76 16 7 C -0.38 -17.56 6.18 84.02 0.52 -17.04 16 8 H 0.11 4.44 7.43 -2.91 -0.02 4.42 16 9 C 0.02 1.09 3.61 84.91 0.31 1.39 16 10 N -0.88 -44.06 10.82 21.65 0.23 -43.83 16 11 Si 0.98 34.38 29.56 68.60 2.03 36.41 16 12 H -0.24 -7.61 7.11 99.48 0.71 -6.90 16 13 H -0.29 -10.48 7.11 99.48 0.71 -9.77 16 14 H -0.27 -9.18 7.11 99.48 0.71 -8.47 16 15 C 0.14 7.34 6.08 38.22 0.23 7.57 16 16 C -0.21 -10.83 8.97 22.40 0.20 -10.62 16 17 C -0.12 -5.26 10.04 22.25 0.22 -5.04 16 18 C -0.16 -6.02 10.04 22.30 0.22 -5.80 16 19 C -0.13 -5.24 10.04 22.25 0.22 -5.02 16 20 C -0.11 -5.19 7.82 22.41 0.18 -5.01 16 21 S 2.42 77.27 4.27 -56.49 -0.24 77.03 16 22 C -0.62 -8.51 10.18 113.37 1.15 -7.35 16 23 O -0.99 -39.34 18.10 -127.37 -2.30 -41.65 16 24 O -0.97 -39.67 17.32 -122.95 -2.13 -41.80 16 25 H 0.08 2.82 6.31 -2.39 -0.02 2.80 16 26 H 0.13 2.11 6.83 -2.38 -0.02 2.09 16 27 H 0.06 1.83 7.90 -2.39 -0.02 1.81 16 28 H 0.27 13.13 8.32 -92.71 -0.77 12.35 16 29 H 0.15 7.92 4.73 -45.01 -0.21 7.71 16 30 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 31 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 32 H 0.14 4.63 8.06 -2.91 -0.02 4.60 16 33 H 0.13 6.35 5.12 -2.91 -0.01 6.34 16 34 H 0.17 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.15 1.58 8.14 -2.39 -0.02 1.57 16 36 H 0.16 1.35 7.00 -2.39 -0.02 1.33 16 Total: -1.00 -79.19 308.49 1.90 -77.29 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: 0.91 Total: 35.02 kcal Atomic # 6 Polarization: -49.78 SS G_CDS: 4.55 Total: -45.22 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -0.97 Total: -64.59 kcal Atomic # 8 Polarization: -111.55 SS G_CDS: -4.38 Total: -115.93 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.41 kcal Atomic # 16 Polarization: 77.27 SS G_CDS: -0.24 Total: 77.03 kcal Total: -79.19 1.90 -77.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171932889.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.524 kcal (2) G-P(sol) polarization free energy of solvation -79.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds