Wall clock time and date at job start Tue Mar 31 2020 03:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37954 * 120.07747 * 2 1 4 4 C 1.38364 * 120.15158 * 180.25098 * 3 2 1 5 5 C 1.38399 * 120.30265 * 359.49435 * 4 3 2 6 6 S 1.76196 * 119.92537 * 180.27263 * 5 4 3 7 7 C 1.81400 * 104.44795 * 89.99911 * 6 5 4 8 8 O 1.42099 * 104.28144 * 206.07317 * 6 5 4 9 9 O 1.42103 * 104.27417 * 333.92691 * 6 5 4 10 10 C 1.37924 * 120.14929 * 0.25512 * 5 4 3 11 11 C 1.39627 * 120.07646 * 179.75000 * 2 1 3 12 12 C 1.47732 * 120.15109 * 359.97332 * 11 2 1 13 13 O 1.21590 * 119.99982 * 303.42280 * 12 11 2 14 14 N 1.34769 * 119.99742 * 123.41549 * 12 11 2 15 15 C 1.46497 * 120.00524 * 3.81375 * 14 12 11 16 16 C 1.36879 * 119.99922 * 183.81133 * 14 12 11 17 17 H 1.07996 * 119.99704 * 351.48369 * 16 14 12 18 18 C 1.39049 * 119.99871 * 171.47473 * 16 14 12 19 19 N 1.31359 * 119.99977 * 7.83891 * 18 16 14 20 20 Si 1.86796 * 119.99720 * 187.83191 * 18 16 14 21 21 H 1.48499 * 109.47344 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47231 * 120.00672 * 20 18 16 23 23 H 1.48503 * 109.47097 * 240.00380 * 20 18 16 24 24 H 1.08998 * 109.46878 * 272.90930 * 1 2 3 25 25 H 1.08997 * 109.46981 * 32.90659 * 1 2 3 26 26 H 1.08997 * 109.47704 * 152.91178 * 1 2 3 27 27 H 1.07997 * 119.93124 * 0.02562 * 3 2 1 28 28 H 1.07994 * 119.84441 * 179.76583 * 4 3 2 29 29 H 1.09000 * 109.47327 * 60.00370 * 7 6 5 30 30 H 1.09005 * 109.46768 * 180.02562 * 7 6 5 31 31 H 1.09003 * 109.46972 * 300.00063 * 7 6 5 32 32 H 1.07998 * 120.07138 * 179.97438 * 10 5 4 33 33 H 1.09007 * 109.46915 * 356.64079 * 15 14 12 34 34 H 1.09000 * 109.47439 * 116.63283 * 15 14 12 35 35 H 1.09000 * 109.47693 * 236.64070 * 15 14 12 36 36 H 0.97006 * 120.00018 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1938 0.0000 4 6 3.5820 1.1956 -0.0052 5 6 4.2819 0.0016 0.0000 6 16 6.0438 0.0155 0.0005 7 6 6.4958 0.0266 1.7573 8 8 6.4043 -1.2211 -0.5994 9 8 6.3846 1.2527 -0.6099 10 6 3.6033 -1.1991 0.0052 11 6 2.2067 -1.2083 0.0053 12 6 1.4732 -2.4906 0.0115 13 8 0.6682 -2.7262 0.8917 14 7 1.6961 -3.3991 -0.9587 15 6 2.7251 -3.1516 -1.9716 16 6 0.9611 -4.5531 -0.9976 17 1 0.3017 -4.8012 -0.1791 18 6 1.0633 -5.4059 -2.0911 19 7 1.9739 -5.1867 -3.0122 20 14 -0.0941 -6.8634 -2.2502 21 1 -1.0201 -6.8892 -1.0895 22 1 -0.8768 -6.7393 -3.5059 23 1 0.6950 -8.1211 -2.2811 24 1 -0.3633 0.0522 1.0263 25 1 -0.3633 0.8628 -0.5583 26 1 -0.3634 -0.9149 -0.4679 27 1 1.6585 2.1291 0.0004 28 1 4.1182 2.1330 -0.0090 29 1 6.0958 -0.8646 2.2410 30 1 7.5816 0.0360 1.8530 31 1 6.0817 0.9154 2.2334 32 1 4.1507 -2.1301 0.0089 33 1 3.1596 -2.1643 -1.8145 34 1 3.5049 -3.9088 -1.8900 35 1 2.2767 -3.1974 -2.9640 36 1 2.0454 -5.7818 -3.7748 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263654432.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:29 Heat of formation + Delta-G solvation = -57.568447 kcal Electronic energy + Delta-G solvation = -22225.327971 eV Core-core repulsion = 18802.994807 eV Total energy + Delta-G solvation = -3422.333164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.78109 -37.64701 -37.05430 -35.90207 -34.85237 -32.73617 -31.94715 -30.68835 -29.64030 -27.23725 -26.33811 -24.81218 -22.92780 -21.79706 -20.04727 -18.54184 -17.47426 -16.90679 -16.30187 -16.19367 -15.78648 -15.18421 -15.07142 -14.61129 -14.26254 -13.81295 -13.53051 -13.44599 -13.32118 -13.26841 -12.74275 -12.23567 -12.11175 -12.04883 -11.95129 -11.93991 -11.71328 -11.43914 -11.15744 -11.10129 -11.05440 -10.83639 -10.51250 -10.38767 -10.28425 -9.10610 -8.89402 -8.74477 -8.39758 -7.97430 -6.34685 -3.89455 0.06139 0.98539 1.37378 2.87322 3.08102 3.19874 3.26933 3.40761 3.85271 3.98017 4.06944 4.14084 4.64084 4.68350 4.81170 4.94842 5.04360 5.11247 5.16041 5.46369 5.49318 5.58113 5.78821 5.85056 5.96305 6.09180 6.15955 6.30220 6.39618 6.43967 6.74210 6.99321 7.06618 7.37720 7.49715 7.96541 8.37926 9.06795 9.31581 9.86426 10.57089 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.005039 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.934810 B = 5555.450745 C = 6466.335445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.002 3.998 3 C -0.147 4.147 4 C -0.026 4.026 5 C -0.672 4.672 6 S 2.501 3.499 7 C -0.652 4.652 8 O -0.933 6.933 9 O -0.943 6.943 10 C 0.002 3.998 11 C -0.103 4.103 12 C 0.463 3.537 13 O -0.591 6.591 14 N -0.427 5.427 15 C 0.097 3.903 16 C -0.301 4.301 17 H 0.108 0.892 18 C 0.029 3.971 19 N -0.875 5.875 20 Si 0.934 3.066 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.280 1.280 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.144 0.856 33 H 0.030 0.970 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.299 11.851 5.509 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.000 4.000 3 C -0.166 4.166 4 C -0.045 4.045 5 C -0.760 4.760 6 S 2.681 3.319 7 C -0.801 4.801 8 O -0.930 6.930 9 O -0.940 6.940 10 C -0.018 4.018 11 C -0.108 4.108 12 C 0.251 3.749 13 O -0.478 6.478 14 N -0.143 5.143 15 C -0.046 4.046 16 C -0.429 4.429 17 H 0.126 0.874 18 C -0.175 4.175 19 N -0.515 5.515 20 Si 0.760 3.240 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.206 1.206 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.149 0.851 28 H 0.156 0.844 29 H 0.152 0.848 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.161 0.839 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.512 11.577 4.996 14.191 hybrid contribution -0.947 -0.738 0.337 1.246 sum 5.565 10.839 5.333 13.300 Atomic orbital electron populations 1.20905 0.90249 1.03329 1.03080 1.20274 0.96787 0.91786 0.91118 1.21023 0.94050 0.97551 1.03961 1.20843 0.94542 0.96182 0.92927 1.30254 1.25198 0.99301 1.21239 1.05067 0.74570 0.74681 0.77567 1.30243 1.12002 1.12183 1.25719 1.93615 1.82023 1.44237 1.73166 1.93559 1.82676 1.44753 1.73050 1.21124 0.93869 0.96684 0.90113 1.20305 0.93455 0.95126 1.01897 1.17607 0.87382 0.84016 0.85902 1.90616 1.39778 1.79067 1.38365 1.43722 1.31042 1.16108 1.23395 1.22160 0.91518 0.97093 0.93782 1.19899 1.21153 0.96701 1.05122 0.87377 1.25444 0.97189 0.99626 0.95210 1.70167 1.31586 1.37924 1.11781 0.85741 0.79798 0.79919 0.78569 1.19070 1.20465 1.20550 0.90109 0.91659 0.90110 0.85105 0.84435 0.84847 0.85277 0.85112 0.83876 0.95117 0.91765 0.89424 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 9.25 36.01 0.33 -1.58 16 2 C 0.00 0.03 5.91 -104.21 -0.62 -0.59 16 3 C -0.15 -2.02 9.70 -39.64 -0.38 -2.41 16 4 C -0.03 -0.34 9.47 -39.48 -0.37 -0.71 16 5 C -0.67 -9.68 5.65 -39.64 -0.22 -9.91 16 6 S 2.50 29.96 5.80 -107.50 -0.62 29.34 16 7 C -0.65 -4.78 10.80 101.05 1.09 -3.69 16 8 O -0.93 -14.78 17.12 -57.54 -0.98 -15.76 16 9 O -0.94 -13.21 17.12 -57.54 -0.98 -14.19 16 10 C 0.00 0.03 6.86 -39.17 -0.27 -0.23 16 11 C -0.10 -2.08 4.79 -104.97 -0.50 -2.58 16 12 C 0.46 11.39 5.95 -12.38 -0.07 11.31 16 13 O -0.59 -16.12 15.78 5.29 0.08 -16.03 16 14 N -0.43 -11.08 3.02 -123.32 -0.37 -11.46 16 15 C 0.10 2.33 8.17 59.85 0.49 2.81 16 16 C -0.30 -8.28 9.54 -15.00 -0.14 -8.42 16 17 H 0.11 3.09 7.19 -52.49 -0.38 2.71 16 18 C 0.03 0.74 5.45 -17.45 -0.10 0.65 16 19 N -0.87 -22.83 9.49 55.50 0.53 -22.31 16 20 Si 0.93 20.38 29.56 -169.99 -5.02 15.36 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 24 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 26 H 0.08 1.55 6.77 -51.93 -0.35 1.20 16 27 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.14 1.41 7.56 -52.49 -0.40 1.01 16 29 H 0.13 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.13 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.13 0.72 8.14 -51.92 -0.42 0.29 16 32 H 0.14 2.54 7.05 -52.49 -0.37 2.17 16 33 H 0.03 0.65 4.61 -51.92 -0.24 0.41 16 34 H 0.06 1.59 7.56 -51.93 -0.39 1.19 16 35 H 0.09 2.20 6.49 -51.93 -0.34 1.87 16 36 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 315.01 15.07 4.75 4.75 Total: -1.00 -34.72 315.01 -7.54 -42.25 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -4.13 Total: 3.41 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -0.77 Total: -15.35 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.15 Total: -33.76 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -1.89 Total: -45.99 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 29.96 SS G_CDS: -0.62 Total: 29.34 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.72 -7.54 -42.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263654432.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.316 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds