Wall clock time and date at job start Tue Mar 31 2020 03:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37954 * 120.07747 * 2 1 4 4 C 1.38364 * 120.15158 * 180.25098 * 3 2 1 5 5 C 1.38399 * 120.30265 * 359.49435 * 4 3 2 6 6 S 1.76196 * 119.92537 * 180.27263 * 5 4 3 7 7 C 1.81400 * 104.44795 * 89.99911 * 6 5 4 8 8 O 1.42099 * 104.28144 * 206.07317 * 6 5 4 9 9 O 1.42103 * 104.27417 * 333.92691 * 6 5 4 10 10 C 1.37924 * 120.14929 * 0.25512 * 5 4 3 11 11 C 1.39627 * 120.07646 * 179.75000 * 2 1 3 12 12 C 1.47732 * 120.15109 * 359.97332 * 11 2 1 13 13 O 1.21590 * 119.99982 * 303.42280 * 12 11 2 14 14 N 1.34769 * 119.99742 * 123.41549 * 12 11 2 15 15 C 1.46497 * 120.00524 * 3.81375 * 14 12 11 16 16 C 1.36879 * 119.99922 * 183.81133 * 14 12 11 17 17 H 1.07996 * 119.99704 * 351.48369 * 16 14 12 18 18 C 1.39049 * 119.99871 * 171.47473 * 16 14 12 19 19 N 1.31359 * 119.99977 * 7.83891 * 18 16 14 20 20 Si 1.86796 * 119.99720 * 187.83191 * 18 16 14 21 21 H 1.48499 * 109.47344 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47231 * 120.00672 * 20 18 16 23 23 H 1.48503 * 109.47097 * 240.00380 * 20 18 16 24 24 H 1.08998 * 109.46878 * 272.90930 * 1 2 3 25 25 H 1.08997 * 109.46981 * 32.90659 * 1 2 3 26 26 H 1.08997 * 109.47704 * 152.91178 * 1 2 3 27 27 H 1.07997 * 119.93124 * 0.02562 * 3 2 1 28 28 H 1.07994 * 119.84441 * 179.76583 * 4 3 2 29 29 H 1.09000 * 109.47327 * 60.00370 * 7 6 5 30 30 H 1.09005 * 109.46768 * 180.02562 * 7 6 5 31 31 H 1.09003 * 109.46972 * 300.00063 * 7 6 5 32 32 H 1.07998 * 120.07138 * 179.97438 * 10 5 4 33 33 H 1.09007 * 109.46915 * 356.64079 * 15 14 12 34 34 H 1.09000 * 109.47439 * 116.63283 * 15 14 12 35 35 H 1.09000 * 109.47693 * 236.64070 * 15 14 12 36 36 H 0.97006 * 120.00018 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1938 0.0000 4 6 3.5820 1.1956 -0.0052 5 6 4.2819 0.0016 0.0000 6 16 6.0438 0.0155 0.0005 7 6 6.4958 0.0266 1.7573 8 8 6.4043 -1.2211 -0.5994 9 8 6.3846 1.2527 -0.6099 10 6 3.6033 -1.1991 0.0052 11 6 2.2067 -1.2083 0.0053 12 6 1.4732 -2.4906 0.0115 13 8 0.6682 -2.7262 0.8917 14 7 1.6961 -3.3991 -0.9587 15 6 2.7251 -3.1516 -1.9716 16 6 0.9611 -4.5531 -0.9976 17 1 0.3017 -4.8012 -0.1791 18 6 1.0633 -5.4059 -2.0911 19 7 1.9739 -5.1867 -3.0122 20 14 -0.0941 -6.8634 -2.2502 21 1 -1.0201 -6.8892 -1.0895 22 1 -0.8768 -6.7393 -3.5059 23 1 0.6950 -8.1211 -2.2811 24 1 -0.3633 0.0522 1.0263 25 1 -0.3633 0.8628 -0.5583 26 1 -0.3634 -0.9149 -0.4679 27 1 1.6585 2.1291 0.0004 28 1 4.1182 2.1330 -0.0090 29 1 6.0958 -0.8646 2.2410 30 1 7.5816 0.0360 1.8530 31 1 6.0817 0.9154 2.2334 32 1 4.1507 -2.1301 0.0089 33 1 3.1596 -2.1643 -1.8145 34 1 3.5049 -3.9088 -1.8900 35 1 2.2767 -3.1974 -2.9640 36 1 2.0454 -5.7818 -3.7748 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263654432.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:29 Heat of formation + Delta-G solvation = -83.305111 kcal Electronic energy + Delta-G solvation = -22226.443996 eV Core-core repulsion = 18802.994807 eV Total energy + Delta-G solvation = -3423.449189 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.32215 -39.29368 -38.10617 -36.96220 -36.83395 -34.04614 -33.80352 -32.15558 -30.28862 -28.62053 -28.18862 -26.65604 -24.42435 -23.07275 -21.52384 -19.70591 -19.14169 -18.62659 -17.79580 -17.18693 -17.10049 -16.58920 -16.34024 -16.24394 -16.00298 -15.41041 -14.89165 -14.74763 -14.46466 -14.00840 -13.94053 -13.86286 -13.60787 -13.35685 -13.20340 -13.10661 -13.05094 -13.02278 -12.87409 -12.67745 -12.48685 -12.29937 -12.14558 -12.01887 -11.62241 -11.09527 -10.54859 -10.09821 -10.00509 -9.90979 -8.33309 -5.99711 -0.83715 -0.23515 0.08095 1.32636 1.37818 1.53014 1.82306 1.96418 2.18841 2.41198 2.92325 3.03501 3.07030 3.23921 3.68955 3.80178 3.82198 4.07832 4.13522 4.18247 4.40145 4.48135 4.56904 4.63205 4.69276 4.83194 4.96728 4.98291 5.01903 5.06786 5.17291 5.34700 5.40106 5.46265 5.78577 5.95087 6.36463 7.04351 7.33983 7.88993 8.57911 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.005039 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.934810 B = 5555.450745 C = 6466.335445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.013 4.013 3 C -0.134 4.134 4 C -0.012 4.012 5 C -0.671 4.671 6 S 2.508 3.492 7 C -0.623 4.623 8 O -0.982 6.982 9 O -0.963 6.963 10 C -0.013 4.013 11 C -0.142 4.142 12 C 0.465 3.535 13 O -0.628 6.628 14 N -0.447 5.447 15 C 0.116 3.884 16 C -0.344 4.344 17 H 0.084 0.916 18 C -0.005 4.005 19 N -0.893 5.893 20 Si 1.000 3.000 21 H -0.272 1.272 22 H -0.267 1.267 23 H -0.268 1.268 24 H 0.084 0.916 25 H 0.104 0.896 26 H 0.036 0.964 27 H 0.176 0.824 28 H 0.179 0.821 29 H 0.142 0.858 30 H 0.159 0.841 31 H 0.162 0.838 32 H 0.129 0.871 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.460 14.610 6.297 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.014 4.014 3 C -0.152 4.152 4 C -0.031 4.031 5 C -0.755 4.755 6 S 2.690 3.310 7 C -0.778 4.778 8 O -0.979 6.979 9 O -0.960 6.960 10 C -0.032 4.032 11 C -0.146 4.146 12 C 0.255 3.745 13 O -0.518 6.518 14 N -0.163 5.163 15 C -0.026 4.026 16 C -0.471 4.471 17 H 0.102 0.898 18 C -0.206 4.206 19 N -0.532 5.532 20 Si 0.823 3.177 21 H -0.196 1.196 22 H -0.192 1.192 23 H -0.193 1.193 24 H 0.102 0.898 25 H 0.123 0.877 26 H 0.055 0.945 27 H 0.193 0.807 28 H 0.197 0.803 29 H 0.161 0.839 30 H 0.177 0.823 31 H 0.180 0.820 32 H 0.147 0.853 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.656 14.349 5.724 17.242 hybrid contribution -1.188 -1.420 0.217 1.865 sum 6.467 12.929 5.941 15.629 Atomic orbital electron populations 1.20884 0.90030 1.02796 1.03468 1.20515 0.97269 0.92022 0.91557 1.21473 0.94506 0.97626 1.01577 1.21445 0.94598 0.97139 0.89886 1.30662 1.26890 0.98438 1.19536 1.04908 0.72998 0.73169 0.79924 1.30032 1.14152 1.14316 1.19250 1.93563 1.82023 1.46072 1.76253 1.93529 1.82123 1.44874 1.75467 1.20979 0.92878 0.97805 0.91562 1.20048 0.94453 0.93733 1.06351 1.18398 0.86553 0.85175 0.84389 1.90551 1.41355 1.80342 1.39513 1.43907 1.31683 1.16442 1.24270 1.21910 0.90463 0.97737 0.92520 1.19850 1.22696 0.98761 1.05797 0.89832 1.26249 0.98297 1.01787 0.94300 1.70258 1.32121 1.38823 1.11968 0.84781 0.77724 0.76752 0.78482 1.19647 1.19222 1.19310 0.89780 0.87749 0.94459 0.80665 0.80337 0.83901 0.82332 0.81957 0.85342 0.92870 0.93481 0.91041 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.67 9.25 71.24 0.66 -3.01 16 2 C -0.01 -0.42 5.91 -19.60 -0.12 -0.53 16 3 C -0.13 -3.15 9.70 22.23 0.22 -2.94 16 4 C -0.01 -0.27 9.47 22.34 0.21 -0.06 16 5 C -0.67 -17.91 5.65 22.23 0.13 -17.78 16 6 S 2.51 54.19 5.80 -56.49 -0.33 53.86 16 7 C -0.62 -6.19 10.80 113.37 1.22 -4.96 16 8 O -0.98 -30.90 17.12 -127.65 -2.19 -33.08 16 9 O -0.96 -24.02 17.12 -127.65 -2.18 -26.21 16 10 C -0.01 -0.45 6.86 22.54 0.15 -0.29 16 11 C -0.14 -5.85 4.79 -20.09 -0.10 -5.94 16 12 C 0.46 24.33 5.95 86.75 0.52 24.84 16 13 O -0.63 -36.59 15.78 -4.00 -0.06 -36.65 16 14 N -0.45 -24.75 3.02 -662.33 -2.00 -26.75 16 15 C 0.12 5.89 8.17 127.77 1.04 6.93 16 16 C -0.34 -20.14 9.54 84.10 0.80 -19.33 16 17 H 0.08 5.17 7.19 -2.91 -0.02 5.15 16 18 C 0.00 -0.26 5.45 84.96 0.46 0.20 16 19 N -0.89 -48.17 9.49 21.68 0.21 -47.97 16 20 Si 1.00 42.98 29.56 68.60 2.03 45.00 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.10 2.40 8.11 -2.39 -0.02 2.39 16 26 H 0.04 1.49 6.77 -2.39 -0.02 1.48 16 27 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 28 H 0.18 2.55 7.56 -2.91 -0.02 2.52 16 29 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.13 4.84 7.05 -2.91 -0.02 4.82 16 33 H 0.05 2.39 4.61 -2.38 -0.01 2.38 16 34 H 0.05 2.47 7.56 -2.39 -0.02 2.45 16 35 H 0.07 3.79 6.49 -2.39 -0.02 3.77 16 36 H 0.28 13.76 8.31 -92.70 -0.77 12.99 16 Total: -1.00 -82.10 315.01 1.78 -80.32 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 1.11 Total: 14.35 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 5.20 Total: -22.88 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -1.79 Total: -74.72 kcal Atomic # 8 Polarization: -91.51 SS G_CDS: -4.43 Total: -95.94 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 54.19 SS G_CDS: -0.33 Total: 53.86 kcal Total: -82.10 1.78 -80.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263654432.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.986 kcal (2) G-P(sol) polarization free energy of solvation -82.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds