Wall clock time and date at job start Tue Mar 31 2020 03:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86808 * 119.99938 * 2 1 4 4 H 1.48497 * 109.46918 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46680 * 299.99546 * 3 2 1 6 6 H 1.48498 * 109.46852 * 59.99506 * 3 2 1 7 7 C 1.40053 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99733 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99743 * 0.02562 * 7 2 1 10 10 O 1.21684 * 120.00404 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99880 * 179.97438 * 9 7 2 12 12 C 1.46499 * 120.00242 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47472 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47339 * 179.97438 * 13 12 11 15 15 S 1.81398 * 109.47178 * 179.97438 * 14 13 12 16 16 O 1.42095 * 110.54225 * 68.37635 * 15 14 13 17 17 O 1.42100 * 110.54081 * 291.62780 * 15 14 13 18 18 C 1.76199 * 104.44793 * 180.02562 * 15 14 13 19 19 C 1.38237 * 119.99920 * 90.00439 * 18 15 14 20 20 C 1.38235 * 119.99712 * 180.02562 * 19 18 15 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00031 * 269.97621 * 18 15 14 24 24 H 0.97003 * 120.00327 * 0.02562 * 1 2 3 25 25 H 0.96999 * 119.99968 * 0.02562 * 11 9 7 26 26 H 1.08999 * 109.47169 * 59.99713 * 12 11 9 27 27 H 1.09002 * 109.47142 * 300.00116 * 12 11 9 28 28 H 1.09003 * 109.46732 * 59.99985 * 13 12 11 29 29 H 1.09002 * 109.46844 * 300.00069 * 13 12 11 30 30 H 1.09004 * 109.46514 * 59.99903 * 14 13 12 31 31 H 1.08994 * 109.47457 * 300.00175 * 14 13 12 32 32 H 1.08005 * 120.00088 * 359.96860 * 19 18 15 33 33 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 34 34 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 35 35 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 36 36 H 1.07999 * 119.99990 * 0.02562 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8818 2.3965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0004 11 7 1.9490 -3.6476 0.0005 12 6 1.2166 -4.9164 0.0011 13 6 2.2108 -6.0793 0.0016 14 6 1.4459 -7.4044 0.0029 15 16 2.6247 -8.7831 0.0027 16 8 3.3223 -8.8428 1.2392 17 8 3.3205 -8.8440 -1.2347 18 6 1.6135 -10.2261 0.0034 19 6 1.2164 -10.7924 -1.1935 20 6 0.4227 -11.9242 -1.1929 21 6 0.0268 -12.4902 0.0046 22 6 0.4199 -11.9210 1.2014 23 6 1.2177 -10.7921 1.2008 24 1 -0.4851 0.8400 -0.0004 25 1 2.9190 -3.6476 0.0009 26 1 0.5896 -4.9744 -0.8886 27 1 0.5903 -4.9740 0.8914 28 1 2.8375 -6.0211 0.8916 29 1 2.8375 -6.0219 -0.8884 30 1 0.8189 -7.4627 -0.8869 31 1 0.8195 -7.4615 0.8930 32 1 1.5256 -10.3501 -2.1290 33 1 0.1121 -12.3664 -2.1279 34 1 -0.5930 -13.3746 0.0050 35 1 0.1070 -12.3607 2.1370 36 1 1.5279 -10.3497 2.1359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274609419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:39 Heat of formation + Delta-G solvation = -90.009068 kcal Electronic energy + Delta-G solvation = -20562.106970 eV Core-core repulsion = 17138.367075 eV Total energy + Delta-G solvation = -3423.739895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.44878 -37.48618 -37.24394 -36.08488 -34.97175 -32.56130 -31.73196 -31.57321 -31.40916 -27.18684 -25.29858 -23.58650 -23.11918 -21.69366 -19.78609 -19.19656 -18.21295 -17.16863 -16.56364 -16.39448 -16.17273 -15.46281 -15.32822 -14.90086 -14.78016 -14.30988 -14.01927 -13.91436 -13.40687 -13.20393 -12.65317 -12.55515 -12.44795 -12.21675 -12.13974 -11.86051 -11.70257 -11.64620 -11.14041 -11.10694 -11.03494 -10.68960 -10.59856 -10.42674 -10.18984 -9.75551 -9.43692 -8.87016 -7.64658 -7.55704 -6.20169 -4.65377 -0.15414 0.47470 0.90123 2.69131 3.08777 3.13041 3.21299 3.25986 3.68957 3.93346 4.09236 4.36958 4.38642 4.49873 4.57293 4.58535 4.65777 4.91981 5.06347 5.06976 5.14022 5.28260 5.41070 5.52732 5.60139 5.70327 5.76964 5.79209 5.82436 5.94962 6.42516 6.43072 6.44759 7.42796 7.90443 8.05411 8.31395 9.01529 9.50174 10.58133 10.76307 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.036261 B = 0.002588 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.989527 B =10815.882063 C =11110.177399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.086 3.914 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.554 3.446 10 O -0.582 6.582 11 N -0.771 5.771 12 C 0.142 3.858 13 C -0.126 4.126 14 C -0.595 4.595 15 S 2.495 3.505 16 O -0.937 6.937 17 O -0.937 6.937 18 C -0.659 4.659 19 C -0.024 4.024 20 C -0.142 4.142 21 C -0.068 4.068 22 C -0.142 4.142 23 C -0.024 4.024 24 H 0.268 0.732 25 H 0.382 0.618 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.390 -23.417 0.012 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.358 3.642 10 O -0.465 6.465 11 N -0.427 5.427 12 C 0.015 3.985 13 C -0.165 4.165 14 C -0.726 4.726 15 S 2.676 3.324 16 O -0.934 6.934 17 O -0.934 6.934 18 C -0.745 4.745 19 C -0.043 4.043 20 C -0.161 4.161 21 C -0.086 4.086 22 C -0.161 4.161 23 C -0.043 4.043 24 H 0.078 0.922 25 H 0.213 0.787 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.191 -23.334 0.011 23.365 hybrid contribution -0.120 0.432 0.002 0.449 sum 1.071 -22.902 0.013 22.927 Atomic orbital electron populations 1.70031 1.07092 1.27189 1.35427 1.25726 0.94631 1.00369 0.92585 0.86302 0.80507 0.81657 0.78197 1.18733 1.20165 1.20169 1.20929 0.93679 0.89324 1.54228 0.91271 1.18243 0.87215 0.82423 0.76343 1.90595 1.14107 1.86847 1.54910 1.46165 1.08701 1.04818 1.82996 1.20772 0.93389 0.83055 1.01259 1.21599 0.99004 0.91769 1.04102 1.30212 1.16216 1.13563 1.12596 1.05523 0.76257 0.75798 0.74786 1.93570 1.69272 1.86036 1.44505 1.93571 1.69354 1.86031 1.44430 1.30704 1.21039 1.23262 0.99472 1.21034 0.92153 0.94296 0.96830 1.21335 0.99235 0.96827 0.98672 1.21517 0.96182 0.98248 0.92696 1.21335 0.99204 0.96850 0.98677 1.21032 0.92156 0.94311 0.96821 0.92152 0.78673 0.92881 0.92897 0.89789 0.89782 0.84305 0.84299 0.83943 0.84973 0.85255 0.84972 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.07 11.83 55.55 0.66 -22.41 16 2 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 3 Si 0.91 20.11 29.56 -169.99 -5.02 15.09 16 4 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -15.37 9.54 -35.63 -0.34 -15.71 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.37 16 9 C 0.55 15.75 7.75 -12.99 -0.10 15.65 16 10 O -0.58 -18.83 15.02 5.20 0.08 -18.75 16 11 N -0.77 -16.99 5.55 -61.72 -0.34 -17.34 16 12 C 0.14 2.57 5.67 -4.04 -0.02 2.55 16 13 C -0.13 -1.63 5.34 -26.73 -0.14 -1.78 16 14 C -0.60 -5.79 5.98 37.16 0.22 -5.57 16 15 S 2.50 26.82 5.16 -107.50 -0.55 26.27 16 16 O -0.94 -12.60 17.13 -57.54 -0.99 -13.59 16 17 O -0.94 -12.61 17.12 -57.54 -0.99 -13.59 16 18 C -0.66 -6.38 5.66 -39.58 -0.22 -6.60 16 19 C -0.02 -0.22 9.47 -39.58 -0.37 -0.59 16 20 C -0.14 -1.05 10.05 -39.58 -0.40 -1.45 16 21 C -0.07 -0.46 10.05 -39.58 -0.40 -0.86 16 22 C -0.14 -1.05 10.05 -39.58 -0.40 -1.45 16 23 C -0.02 -0.22 9.47 -39.58 -0.37 -0.59 16 24 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 25 H 0.38 7.29 8.45 -40.82 -0.35 6.94 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.14 1.10 8.14 -51.92 -0.42 0.68 16 31 H 0.14 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.14 1.10 7.57 -52.48 -0.40 0.70 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 36 H 0.14 1.10 7.57 -52.49 -0.40 0.70 16 LS Contribution 329.97 15.07 4.97 4.97 Total: -1.00 -39.61 329.97 -9.32 -48.93 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.49 Total: 4.50 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -2.65 Total: -14.08 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.31 Total: -39.75 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -1.89 Total: -45.93 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 26.82 SS G_CDS: -0.55 Total: 26.27 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -39.61 -9.32 -48.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274609419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.080 kcal (2) G-P(sol) polarization free energy of solvation -39.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds