Wall clock time and date at job start Tue Mar 31 2020 03:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86808 * 119.99938 * 2 1 4 4 H 1.48497 * 109.46918 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46680 * 299.99546 * 3 2 1 6 6 H 1.48498 * 109.46852 * 59.99506 * 3 2 1 7 7 C 1.40053 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99733 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99743 * 0.02562 * 7 2 1 10 10 O 1.21684 * 120.00404 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99880 * 179.97438 * 9 7 2 12 12 C 1.46499 * 120.00242 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47472 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47339 * 179.97438 * 13 12 11 15 15 S 1.81398 * 109.47178 * 179.97438 * 14 13 12 16 16 O 1.42095 * 110.54225 * 68.37635 * 15 14 13 17 17 O 1.42100 * 110.54081 * 291.62780 * 15 14 13 18 18 C 1.76199 * 104.44793 * 180.02562 * 15 14 13 19 19 C 1.38237 * 119.99920 * 90.00439 * 18 15 14 20 20 C 1.38235 * 119.99712 * 180.02562 * 19 18 15 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00031 * 269.97621 * 18 15 14 24 24 H 0.97003 * 120.00327 * 0.02562 * 1 2 3 25 25 H 0.96999 * 119.99968 * 0.02562 * 11 9 7 26 26 H 1.08999 * 109.47169 * 59.99713 * 12 11 9 27 27 H 1.09002 * 109.47142 * 300.00116 * 12 11 9 28 28 H 1.09003 * 109.46732 * 59.99985 * 13 12 11 29 29 H 1.09002 * 109.46844 * 300.00069 * 13 12 11 30 30 H 1.09004 * 109.46514 * 59.99903 * 14 13 12 31 31 H 1.08994 * 109.47457 * 300.00175 * 14 13 12 32 32 H 1.08005 * 120.00088 * 359.96860 * 19 18 15 33 33 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 34 34 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 35 35 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 36 36 H 1.07999 * 119.99990 * 0.02562 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8818 2.3965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0004 11 7 1.9490 -3.6476 0.0005 12 6 1.2166 -4.9164 0.0011 13 6 2.2108 -6.0793 0.0016 14 6 1.4459 -7.4044 0.0029 15 16 2.6247 -8.7831 0.0027 16 8 3.3223 -8.8428 1.2392 17 8 3.3205 -8.8440 -1.2347 18 6 1.6135 -10.2261 0.0034 19 6 1.2164 -10.7924 -1.1935 20 6 0.4227 -11.9242 -1.1929 21 6 0.0268 -12.4902 0.0046 22 6 0.4199 -11.9210 1.2014 23 6 1.2177 -10.7921 1.2008 24 1 -0.4851 0.8400 -0.0004 25 1 2.9190 -3.6476 0.0009 26 1 0.5896 -4.9744 -0.8886 27 1 0.5903 -4.9740 0.8914 28 1 2.8375 -6.0211 0.8916 29 1 2.8375 -6.0219 -0.8884 30 1 0.8189 -7.4627 -0.8869 31 1 0.8195 -7.4615 0.8930 32 1 1.5256 -10.3501 -2.1290 33 1 0.1121 -12.3664 -2.1279 34 1 -0.5930 -13.3746 0.0050 35 1 0.1070 -12.3607 2.1370 36 1 1.5279 -10.3497 2.1359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274609419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:39 Heat of formation + Delta-G solvation = -120.682051 kcal Electronic energy + Delta-G solvation = -20563.437050 eV Core-core repulsion = 17138.367075 eV Total energy + Delta-G solvation = -3425.069975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.02263 -39.47409 -38.19996 -37.05300 -36.50805 -34.62858 -33.31067 -32.29117 -31.98044 -29.01905 -26.91333 -24.29132 -23.69666 -22.91601 -21.77541 -20.02491 -19.25961 -18.86253 -17.51306 -17.42155 -17.29313 -16.85824 -16.42325 -15.96970 -15.89555 -15.66911 -15.47626 -14.73393 -14.46944 -14.37967 -14.06846 -13.72122 -13.47850 -13.21789 -13.18788 -13.10034 -13.08473 -12.90834 -12.77734 -12.62093 -12.19729 -12.04746 -11.98370 -11.86799 -11.45467 -10.94646 -10.36881 -10.02504 -9.88452 -9.50242 -8.29841 -6.85869 -0.99393 -0.15939 0.31817 1.41125 1.41530 1.59574 1.89045 2.25192 2.45538 2.46599 2.84806 3.11165 3.13282 3.60602 3.71748 3.73713 3.89749 3.94962 3.98022 4.12346 4.31872 4.40749 4.50846 4.52377 4.72497 4.73677 4.97994 4.98778 5.03537 5.10949 5.28887 5.32728 5.40121 5.87627 5.88525 6.22761 6.26278 6.86820 7.53549 8.48007 8.66691 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.036261 B = 0.002588 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.989527 B =10815.882063 C =11110.177399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.027 3.973 3 Si 0.999 3.001 4 H -0.247 1.247 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.536 3.464 10 O -0.632 6.632 11 N -0.760 5.760 12 C 0.139 3.861 13 C -0.123 4.123 14 C -0.589 4.589 15 S 2.514 3.486 16 O -0.968 6.968 17 O -0.968 6.968 18 C -0.667 4.667 19 C -0.044 4.044 20 C -0.147 4.147 21 C -0.067 4.067 22 C -0.147 4.147 23 C -0.044 4.044 24 H 0.275 0.725 25 H 0.397 0.603 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.974 -24.310 0.015 24.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.170 1.170 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.610 4.610 8 H 0.107 0.893 9 C 0.340 3.660 10 O -0.520 6.520 11 N -0.415 5.415 12 C 0.013 3.987 13 C -0.162 4.162 14 C -0.720 4.720 15 S 2.699 3.301 16 O -0.965 6.965 17 O -0.965 6.965 18 C -0.756 4.756 19 C -0.063 4.063 20 C -0.165 4.165 21 C -0.085 4.085 22 C -0.165 4.165 23 C -0.063 4.063 24 H 0.085 0.915 25 H 0.231 0.769 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.177 0.823 31 H 0.177 0.823 32 H 0.165 0.835 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.174 0.826 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.849 -24.263 0.014 24.333 hybrid contribution -0.373 0.559 0.001 0.672 sum 1.476 -23.703 0.015 23.749 Atomic orbital electron populations 1.70189 1.09541 1.28928 1.36533 1.26998 0.95553 1.05041 0.91197 0.84950 0.79334 0.75327 0.78525 1.17009 1.19336 1.19345 1.21486 0.94830 0.90090 1.54579 0.89333 1.18625 0.86865 0.84414 0.76102 1.90546 1.16176 1.88021 1.57257 1.45852 1.09549 1.04850 1.81294 1.20915 0.94355 0.83095 1.00335 1.21531 0.98244 0.91149 1.05269 1.30161 1.16053 1.11035 1.14775 1.04665 0.76078 0.76045 0.73331 1.93523 1.70748 1.86693 1.45564 1.93524 1.70828 1.86688 1.45492 1.30370 1.21916 1.22895 1.00379 1.21275 0.92923 0.95285 0.96769 1.21700 0.98454 0.96191 1.00192 1.21951 0.95623 0.98803 0.92111 1.21701 0.98422 0.96212 1.00198 1.21274 0.92926 0.95297 0.96760 0.91537 0.76891 0.93844 0.93854 0.88760 0.88756 0.82296 0.82289 0.83485 0.82600 0.82209 0.82597 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.45 11.83 21.84 0.26 -50.19 16 2 C 0.03 1.51 5.50 85.31 0.47 1.98 16 3 Si 1.00 40.95 29.56 68.60 2.03 42.98 16 4 H -0.25 -9.36 7.11 99.48 0.71 -8.66 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 6 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.57 -32.54 9.54 24.83 0.24 -32.30 16 8 H 0.09 4.50 7.85 -2.91 -0.02 4.48 16 9 C 0.54 31.16 7.75 86.36 0.67 31.83 16 10 O -0.63 -42.44 15.02 -4.30 -0.06 -42.50 16 11 N -0.76 -33.77 5.55 -467.42 -2.59 -36.37 16 12 C 0.14 5.06 5.67 86.38 0.49 5.55 16 13 C -0.12 -3.09 5.34 30.59 0.16 -2.93 16 14 C -0.59 -10.81 5.98 71.98 0.43 -10.38 16 15 S 2.51 53.05 5.16 -56.49 -0.29 52.76 16 16 O -0.97 -25.98 17.13 -127.65 -2.19 -28.16 16 17 O -0.97 -25.98 17.12 -127.65 -2.19 -28.17 16 18 C -0.67 -12.38 5.66 22.27 0.13 -12.25 16 19 C -0.04 -0.73 9.47 22.27 0.21 -0.52 16 20 C -0.15 -1.84 10.05 22.27 0.22 -1.62 16 21 C -0.07 -0.72 10.05 22.27 0.22 -0.50 16 22 C -0.15 -1.84 10.05 22.27 0.22 -1.62 16 23 C -0.04 -0.73 9.47 22.27 0.21 -0.52 16 24 H 0.27 15.18 8.29 -92.71 -0.77 14.41 16 25 H 0.40 14.99 8.45 -92.71 -0.78 14.21 16 26 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.16 2.29 8.14 -2.39 -0.02 2.28 16 31 H 0.16 2.29 8.14 -2.39 -0.02 2.28 16 32 H 0.15 2.18 7.57 -2.91 -0.02 2.15 16 33 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 35 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 36 H 0.15 2.17 7.57 -2.91 -0.02 2.15 16 Total: -1.00 -87.89 329.97 -1.04 -88.94 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.31 Total: 23.98 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: 3.68 Total: -23.27 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -2.34 Total: -86.56 kcal Atomic # 8 Polarization: -94.39 SS G_CDS: -4.44 Total: -98.83 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: 53.05 SS G_CDS: -0.29 Total: 52.76 kcal Total: -87.89 -1.04 -88.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274609419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.744 kcal (2) G-P(sol) polarization free energy of solvation -87.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds