Wall clock time and date at job start Tue Mar 31 2020 03:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 O 1.42097 * 108.58173 * 2 1 4 4 O 1.42101 * 108.57555 * 228.96681 * 2 1 3 5 5 C 1.81406 * 101.91772 * 114.48668 * 2 1 3 6 6 C 1.52998 * 109.46847 * 179.97438 * 5 2 1 7 7 C 1.50698 * 109.47266 * 180.02562 * 6 5 2 8 8 O 1.21280 * 119.99698 * 354.83556 * 7 6 5 9 9 N 1.34779 * 120.00551 * 174.84079 * 7 6 5 10 10 C 1.37145 * 119.99420 * 5.67082 * 9 7 6 11 11 H 1.07998 * 119.99633 * 55.67594 * 10 9 7 12 12 C 1.38885 * 120.00095 * 235.66821 * 10 9 7 13 13 N 1.31432 * 119.99822 * 9.25400 * 12 10 9 14 14 Si 1.86797 * 120.00347 * 189.25114 * 12 10 9 15 15 H 1.48497 * 109.46879 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47324 * 119.99950 * 14 12 10 17 17 H 1.48496 * 109.47473 * 240.00378 * 14 12 10 18 18 C 1.39785 * 120.00130 * 185.67673 * 9 7 6 19 19 C 1.38961 * 120.07283 * 175.18842 * 18 9 7 20 20 C 1.38081 * 119.91704 * 179.97438 * 19 18 9 21 21 C 1.38303 * 120.08186 * 359.97438 * 20 19 18 22 22 C 1.38313 * 120.15414 * 0.02562 * 21 20 19 23 23 C 1.38080 * 120.07962 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.46438 * 305.52057 * 1 2 3 25 25 H 1.08997 * 109.46734 * 65.51285 * 1 2 3 26 26 H 1.08994 * 109.47400 * 185.51399 * 1 2 3 27 27 H 1.08998 * 109.47380 * 60.00035 * 5 2 1 28 28 H 1.09000 * 109.46892 * 299.99328 * 5 2 1 29 29 H 1.09000 * 109.47496 * 60.00025 * 6 5 2 30 30 H 1.09006 * 109.46959 * 299.99897 * 6 5 2 31 31 H 0.96994 * 119.99721 * 184.98388 * 13 12 10 32 32 H 1.07998 * 120.04322 * 359.69957 * 19 18 9 33 33 H 1.08007 * 119.96193 * 179.97438 * 20 19 18 34 34 H 1.08004 * 119.92595 * 179.97438 * 21 20 19 35 35 H 1.08004 * 119.95761 * 180.02562 * 22 21 20 36 36 H 1.08000 * 120.04146 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2669 1.3469 0.0000 4 8 2.2668 -0.8843 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 3.7054 -0.8196 1.7980 7 6 4.0167 -1.4313 3.1396 8 8 3.1185 -1.6807 3.9154 9 7 5.2933 -1.7012 3.4774 10 6 6.3175 -1.3139 2.6518 11 1 6.4157 -0.2779 2.3628 12 6 7.2285 -2.2538 2.1874 13 7 7.0101 -3.5345 2.3859 14 14 8.7642 -1.6977 1.2808 15 1 8.7755 -0.2156 1.1893 16 1 9.9683 -2.1568 2.0188 17 1 8.7698 -2.2786 -0.0858 18 6 5.5732 -2.3760 4.6692 19 6 6.8789 -2.7434 4.9712 20 6 7.1518 -3.4094 6.1497 21 6 6.1277 -3.7103 7.0291 22 6 4.8270 -3.3461 6.7316 23 6 4.5466 -2.6799 5.5551 24 1 -0.3632 0.5971 0.8365 25 1 -0.3633 0.4260 -0.9352 26 1 -0.3634 -1.0228 0.0987 27 1 1.7610 -1.7369 1.6666 28 1 1.7611 -0.1170 2.4043 29 1 4.1336 0.1815 1.7466 30 1 4.1327 -1.4385 1.0090 31 1 7.6797 -4.1865 2.1265 32 1 7.6785 -2.5123 4.2831 33 1 8.1663 -3.6957 6.3849 34 1 6.3440 -4.2316 7.9499 35 1 4.0297 -3.5823 7.4209 36 1 3.5307 -2.3962 5.3233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299453849.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:27 Heat of formation + Delta-G solvation = -56.539023 kcal Electronic energy + Delta-G solvation = -22032.098324 eV Core-core repulsion = 18609.809799 eV Total energy + Delta-G solvation = -3422.288525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.81068 -37.37310 -36.87244 -35.92478 -35.11427 -32.79142 -32.02059 -29.72542 -29.65900 -28.83954 -25.40349 -24.55611 -21.66432 -21.07812 -19.46722 -18.76692 -17.84143 -16.90232 -16.17898 -16.03990 -15.61135 -15.56093 -15.21318 -14.77864 -14.42004 -13.67251 -13.39065 -13.32242 -13.22763 -13.11383 -12.82938 -12.35347 -12.12704 -11.98925 -11.89665 -11.83756 -11.56117 -11.30591 -11.15283 -11.00160 -10.97148 -10.87653 -10.46350 -10.44060 -10.07647 -9.29850 -8.79474 -8.24901 -7.84169 -6.93990 -6.37367 -4.61459 0.03551 2.35632 2.52106 2.80841 3.01991 3.12638 3.16278 3.60442 3.69255 3.93396 4.06163 4.43035 4.69363 4.70850 4.78748 4.90391 5.06203 5.16302 5.51761 5.59274 5.82858 5.87938 6.03809 6.08972 6.12273 6.24811 6.66441 6.68994 6.86533 7.09742 7.21082 7.46583 7.56405 7.63952 7.72019 8.02464 8.37000 8.78464 9.14917 9.52971 10.42062 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.005489 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.069155 B = 5099.524248 C = 6575.253039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.419 3.581 3 O -0.942 6.942 4 O -0.939 6.939 5 C -0.587 4.587 6 C -0.111 4.111 7 C 0.501 3.499 8 O -0.567 6.567 9 N -0.380 5.380 10 C -0.375 4.375 11 H 0.097 0.903 12 C 0.057 3.943 13 N -0.839 5.839 14 Si 0.914 3.086 15 H -0.262 1.262 16 H -0.275 1.275 17 H -0.275 1.275 18 C 0.182 3.818 19 C -0.104 4.104 20 C -0.124 4.124 21 C -0.172 4.172 22 C -0.121 4.121 23 C -0.193 4.193 24 H 0.127 0.873 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.276 0.724 32 H 0.132 0.868 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.555 3.728 -1.195 8.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.602 3.398 3 O -0.940 6.940 4 O -0.936 6.936 5 C -0.717 4.717 6 C -0.151 4.151 7 C 0.292 3.708 8 O -0.452 6.452 9 N -0.087 5.087 10 C -0.503 4.503 11 H 0.115 0.885 12 C -0.154 4.154 13 N -0.471 5.471 14 Si 0.738 3.262 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.200 1.200 18 C 0.086 3.914 19 C -0.125 4.125 20 C -0.143 4.143 21 C -0.192 4.192 22 C -0.140 4.140 23 C -0.212 4.212 24 H 0.146 0.854 25 H 0.144 0.856 26 H 0.146 0.854 27 H 0.153 0.847 28 H 0.154 0.846 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.086 0.914 32 H 0.150 0.850 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.388 3.750 -1.690 8.456 hybrid contribution 0.412 -0.407 0.184 0.607 sum -6.976 3.343 -1.506 7.881 Atomic orbital electron populations 1.30284 1.27554 1.11489 1.11365 1.07873 0.78036 0.75865 0.78074 1.93584 1.78839 1.34766 1.86778 1.93601 1.78720 1.66864 1.54463 1.30102 1.05775 1.14359 1.21495 1.21059 0.90524 1.04285 0.99247 1.20510 0.82479 0.80077 0.87753 1.90162 1.47002 1.56392 1.51662 1.40958 1.04985 1.47135 1.15651 1.19450 1.07845 0.94773 1.28183 0.88535 1.25640 0.99889 0.94639 0.95186 1.70036 1.33970 1.00470 1.42614 0.86070 0.80859 0.79760 0.79471 1.18592 1.20034 1.20033 1.18287 0.93362 0.94140 0.85641 1.21047 0.96565 0.98932 0.95947 1.20783 0.97975 1.00616 0.94903 1.20799 0.93675 1.04830 0.99846 1.20866 0.95725 1.00045 0.97356 1.22787 1.02600 1.01842 0.94003 0.85415 0.85620 0.85377 0.84683 0.84630 0.87960 0.87058 0.91400 0.85019 0.87732 0.88153 0.87727 0.80835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.77 10.62 101.05 1.07 -3.70 16 2 S 2.42 28.49 5.36 -107.50 -0.58 27.92 16 3 O -0.94 -14.20 18.10 -57.83 -1.05 -15.25 16 4 O -0.94 -14.75 18.10 -57.83 -1.05 -15.79 16 5 C -0.59 -7.79 5.11 37.16 0.19 -7.60 16 6 C -0.11 -2.00 4.53 -27.88 -0.13 -2.13 16 7 C 0.50 11.26 7.57 -10.99 -0.08 11.18 16 8 O -0.57 -13.01 12.37 5.56 0.07 -12.94 16 9 N -0.38 -9.34 2.62 -58.98 -0.15 -9.49 16 10 C -0.38 -9.08 7.61 -14.94 -0.11 -9.19 16 11 H 0.10 2.21 7.85 -52.49 -0.41 1.80 16 12 C 0.06 1.36 3.49 -17.48 -0.06 1.30 16 13 N -0.84 -21.47 11.39 55.49 0.63 -20.84 16 14 Si 0.91 18.57 29.57 -169.99 -5.03 13.54 16 15 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 16 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 18 C 0.18 4.52 6.05 -83.70 -0.51 4.01 16 19 C -0.10 -2.47 7.87 -39.37 -0.31 -2.78 16 20 C -0.12 -2.58 10.04 -39.61 -0.40 -2.98 16 21 C -0.17 -3.38 10.04 -39.53 -0.40 -3.78 16 22 C -0.12 -2.48 10.04 -39.61 -0.40 -2.87 16 23 C -0.19 -4.49 9.06 -39.37 -0.36 -4.84 16 24 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.13 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.13 1.65 8.14 -51.93 -0.42 1.23 16 28 H 0.14 1.57 8.04 -51.92 -0.42 1.15 16 29 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 30 H 0.11 2.08 8.04 -51.93 -0.42 1.66 16 31 H 0.28 6.65 8.32 -40.82 -0.34 6.32 16 32 H 0.13 3.23 5.15 -52.49 -0.27 2.96 16 33 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 34 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.10 1.83 8.06 -52.48 -0.42 1.40 16 36 H 0.18 4.12 4.50 -56.37 -0.25 3.86 16 LS Contribution 317.64 15.07 4.79 4.79 Total: -1.00 -33.16 317.64 -8.14 -41.30 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -4.29 Total: 10.16 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -1.49 Total: -23.39 kcal Atomic # 7 Polarization: -30.81 SS G_CDS: 0.48 Total: -30.33 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -2.02 Total: -43.99 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 16 Polarization: 28.49 SS G_CDS: -0.58 Total: 27.92 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.16 -8.14 -41.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299453849.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.242 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds