Wall clock time and date at job start Tue Mar 31 2020 03:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00133 * 2 1 4 4 C 1.50697 * 109.47555 * 179.97438 * 3 2 1 5 5 C 1.37475 * 123.34721 * 0.02692 * 4 3 2 6 6 C 1.33823 * 115.09701 * 179.97438 * 5 4 3 7 7 S 1.70609 * 110.95654 * 359.97438 * 6 5 4 8 8 C 1.36646 * 123.35288 * 179.97438 * 4 3 2 9 9 C 1.46576 * 125.46009 * 0.06509 * 8 4 3 10 10 O 1.21709 * 119.99710 * 359.97438 * 9 8 4 11 11 N 1.34779 * 120.00266 * 179.97438 * 9 8 4 12 12 C 1.47063 * 136.05602 * 359.63079 * 11 9 8 13 13 C 1.53240 * 88.08360 * 207.20190 * 12 11 9 14 14 O 1.42901 * 114.19669 * 87.72443 * 13 12 11 15 15 C 1.50701 * 114.32721 * 220.47205 * 13 12 11 16 16 H 1.07994 * 119.99980 * 93.75393 * 15 13 12 17 17 C 1.37872 * 119.99601 * 273.75982 * 15 13 12 18 18 N 1.31517 * 120.00295 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99872 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46997 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47105 * 119.99679 * 19 17 15 22 22 H 1.48499 * 109.46865 * 239.99389 * 19 17 15 23 23 C 1.47066 * 136.05608 * 179.97438 * 11 9 8 24 24 H 1.09006 * 109.47383 * 299.99933 * 1 2 3 25 25 H 1.09000 * 109.47319 * 60.00183 * 1 2 3 26 26 H 1.08999 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47254 * 59.99697 * 3 2 1 28 28 H 1.09004 * 109.46734 * 300.00413 * 3 2 1 29 29 H 1.07995 * 122.45133 * 359.68846 * 5 4 3 30 30 H 1.07997 * 124.52008 * 179.97438 * 6 5 4 31 31 H 1.09000 * 113.46519 * 321.93161 * 12 11 9 32 32 H 1.08997 * 113.47215 * 92.37314 * 12 11 9 33 33 H 0.96696 * 113.99752 * 86.30684 * 14 13 12 34 34 H 0.97002 * 119.99996 * 180.02562 * 18 17 15 35 35 H 1.08995 * 113.46915 * 267.62219 * 23 11 9 36 36 H 1.08998 * 113.46737 * 38.01466 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.1752 -0.0179 0.0006 6 6 5.5106 0.0690 0.0007 7 16 6.0161 1.6985 0.0001 8 6 4.3515 2.2651 0.0003 9 6 3.9312 3.6694 0.0006 10 8 2.7470 3.9501 0.0008 11 7 4.8562 4.6496 0.0007 12 6 6.3252 4.7194 0.0071 13 6 6.2061 6.0806 0.7010 14 8 6.1320 6.0070 2.1262 15 6 7.1835 7.1163 0.2079 16 1 6.8942 7.8028 -0.5739 17 6 8.4471 7.1873 0.7550 18 7 8.7992 6.3515 1.7075 19 14 9.6584 8.4715 0.1444 20 1 9.0222 9.2839 -0.9234 21 1 10.0526 9.3553 1.2708 22 1 10.8637 7.7959 -0.3997 23 6 4.8406 6.1202 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8465 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.6562 -0.9649 0.0050 30 1 6.1792 -0.7791 0.0010 31 1 6.7932 3.9564 0.6290 32 1 6.7614 4.7772 -0.9900 33 1 6.9937 5.9822 2.5640 34 1 9.6881 6.4017 2.0926 35 1 4.8777 6.5546 -0.9984 36 1 4.0482 6.5460 0.6161 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331427732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:35 Heat of formation + Delta-G solvation = -53.627552 kcal Electronic energy + Delta-G solvation = -21737.672234 eV Core-core repulsion = 18315.509960 eV Total energy + Delta-G solvation = -3422.162274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.78631 -38.76372 -37.36689 -36.55697 -34.07678 -32.23864 -30.52464 -29.29909 -27.61159 -25.89721 -25.25231 -24.87129 -23.28204 -20.96289 -19.25617 -18.31443 -17.78120 -17.09110 -16.22943 -15.92084 -15.88696 -15.29896 -15.22345 -14.81836 -14.39085 -14.20797 -13.99771 -13.43823 -13.03969 -12.71363 -12.48037 -12.27967 -12.14401 -11.97186 -11.94352 -11.61059 -11.31323 -11.17435 -11.12144 -10.63634 -10.46321 -10.27089 -9.81297 -9.76317 -9.29783 -8.83341 -8.67574 -8.45716 -8.25738 -7.90129 -6.45056 -4.55688 0.72110 1.70941 2.13686 2.57786 3.10948 3.20693 3.24142 3.43813 3.60247 3.76284 4.14608 4.76239 4.95136 4.97460 5.22071 5.27712 5.39288 5.50664 5.53440 5.56773 5.63921 5.66799 5.83891 6.07276 6.13148 6.27873 6.34325 6.42350 6.43744 6.57748 6.62069 7.04229 7.16011 7.58341 7.74468 8.35533 8.48579 8.62625 9.15975 9.43969 10.61759 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.028152 B = 0.004057 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.356432 B = 6900.267526 C = 7554.199807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.394 6.394 3 C 0.128 3.872 4 C -0.038 4.038 5 C -0.129 4.129 6 C -0.258 4.258 7 S 0.237 5.763 8 C -0.251 4.251 9 C 0.608 3.392 10 O -0.555 6.555 11 N -0.631 5.631 12 C 0.065 3.935 13 C 0.243 3.757 14 O -0.570 6.570 15 C -0.534 4.534 16 H 0.074 0.926 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.910 3.090 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.110 3.890 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.146 0.854 30 H 0.165 0.835 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.395 0.605 34 H 0.274 0.726 35 H 0.088 0.912 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.585 -10.798 -3.595 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.314 6.314 3 C 0.050 3.950 4 C -0.054 4.054 5 C -0.160 4.160 6 C -0.396 4.396 7 S 0.507 5.493 8 C -0.372 4.372 9 C 0.397 3.603 10 O -0.437 6.437 11 N -0.363 5.363 12 C -0.059 4.059 13 C 0.201 3.799 14 O -0.383 6.383 15 C -0.572 4.572 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.736 3.264 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.011 4.011 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.164 0.836 30 H 0.183 0.817 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.251 0.749 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.238 -10.320 -3.585 12.115 hybrid contribution -0.158 -0.216 -0.186 0.326 sum -5.396 -10.536 -3.771 12.424 Atomic orbital electron populations 1.22699 0.80883 1.02407 1.00254 1.87783 1.19716 1.28224 1.95628 1.20962 0.88073 0.83694 1.02239 1.19100 0.95317 0.91424 0.99573 1.19709 0.92744 0.99017 1.04561 1.25530 1.00180 1.03937 1.09919 1.83645 1.04061 0.95175 1.66441 1.24410 0.97626 0.97014 1.18129 1.16344 0.84577 0.82281 0.77052 1.90736 1.16199 1.83181 1.53562 1.49565 1.08845 1.07817 1.70096 1.24367 0.77495 1.02390 1.01645 1.19472 0.90147 0.89851 0.80403 1.86054 1.37783 1.96337 1.18175 1.21453 0.97009 1.17310 1.21419 0.90745 1.25085 0.98176 0.95573 0.94195 1.69268 1.21479 1.36731 1.26243 0.86246 0.80281 0.80898 0.78927 1.19382 1.20590 1.20619 1.23364 0.99649 0.77836 1.00297 0.93968 0.94015 0.89757 0.90880 0.90975 0.83622 0.81745 0.91255 0.89545 0.74874 0.91535 0.89380 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.39 -5.45 9.62 -35.23 -0.34 -5.79 16 3 C 0.13 2.00 4.91 36.00 0.18 2.18 16 4 C -0.04 -0.64 5.90 -105.48 -0.62 -1.26 16 5 C -0.13 -1.86 9.49 -41.41 -0.39 -2.25 16 6 C -0.26 -3.42 10.92 29.18 0.32 -3.10 16 7 S 0.24 3.67 19.90 -107.50 -2.14 1.53 16 8 C -0.25 -4.59 6.45 -36.80 -0.24 -4.83 16 9 C 0.61 12.87 8.03 -12.90 -0.10 12.77 16 10 O -0.55 -12.61 15.65 5.18 0.08 -12.53 16 11 N -0.63 -13.49 3.69 -186.96 -0.69 -14.18 16 12 C 0.06 1.37 6.64 -8.64 -0.06 1.31 16 13 C 0.24 5.72 1.57 -91.38 -0.14 5.58 16 14 O -0.57 -14.53 13.54 -35.23 -0.48 -15.01 16 15 C -0.53 -12.98 8.69 -34.44 -0.30 -13.28 16 16 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 17 C 0.07 1.75 5.40 -17.82 -0.10 1.65 16 18 N -0.90 -22.08 11.01 55.43 0.61 -21.47 16 19 Si 0.91 18.90 29.54 -169.99 -5.02 13.88 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 C 0.11 2.38 8.04 -8.49 -0.07 2.31 16 24 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.20 7.83 -51.92 -0.41 0.79 16 28 H 0.07 1.15 7.84 -51.93 -0.41 0.74 16 29 H 0.15 1.88 7.47 -52.49 -0.39 1.49 16 30 H 0.16 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.07 1.46 6.39 -51.93 -0.33 1.13 16 32 H 0.09 1.73 8.10 -51.93 -0.42 1.31 16 33 H 0.39 10.12 6.32 45.56 0.29 10.41 16 34 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 35 H 0.09 1.71 8.10 -51.93 -0.42 1.29 16 36 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 320.10 15.07 4.82 4.82 Total: -1.00 -27.81 320.10 -7.31 -35.12 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -3.75 Total: 11.08 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -0.41 Total: 2.54 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.08 Total: -35.65 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.73 Total: -33.32 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -2.14 Total: 1.53 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.81 -7.31 -35.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331427732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.505 kcal (2) G-P(sol) polarization free energy of solvation -27.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds