Wall clock time and date at job start Tue Mar 31 2020 03:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 120.00386 * 2 1 4 4 C 1.38207 * 120.00018 * 180.27168 * 3 2 1 5 5 C 1.38259 * 120.00170 * 359.75363 * 4 3 2 6 6 C 1.38212 * 119.99885 * 359.97422 * 5 4 3 7 7 C 1.38222 * 119.99862 * 179.74969 * 2 1 3 8 8 S 1.76200 * 119.99779 * 359.97438 * 7 2 1 9 9 O 1.42096 * 106.39882 * 181.18728 * 8 7 2 10 10 O 1.42103 * 106.40193 * 48.27201 * 8 7 2 11 11 N 1.65593 * 107.22178 * 294.73145 * 8 7 2 12 12 C 1.47584 * 134.49803 * 89.99723 * 11 8 7 13 13 C 1.53946 * 86.12025 * 155.36171 * 12 11 8 14 14 O 1.42897 * 113.74068 * 269.15867 * 13 12 11 15 15 C 1.50700 * 113.74246 * 137.95222 * 13 12 11 16 16 H 1.07998 * 119.99659 * 4.91778 * 15 13 12 17 17 C 1.37870 * 120.00275 * 184.91298 * 15 13 12 18 18 N 1.31521 * 119.99939 * 13.83955 * 17 15 13 19 19 Si 1.86793 * 120.00241 * 193.83635 * 17 15 13 20 20 H 1.48503 * 109.47305 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47166 * 299.99995 * 19 17 15 22 22 H 1.48499 * 109.46987 * 59.99962 * 19 17 15 23 23 C 1.47585 * 134.49149 * 270.00557 * 11 8 7 24 24 H 1.09003 * 109.47242 * 270.25335 * 1 2 3 25 25 H 1.09006 * 109.47040 * 30.25022 * 1 2 3 26 26 H 1.09003 * 109.47200 * 150.24970 * 1 2 3 27 27 H 1.08003 * 119.99794 * 0.04546 * 3 2 1 28 28 H 1.07999 * 119.99927 * 179.77084 * 4 3 2 29 29 H 1.08002 * 120.00257 * 179.97438 * 5 4 3 30 30 H 1.08008 * 120.00217 * 180.02562 * 6 5 4 31 31 H 1.09003 * 113.76727 * 41.05741 * 12 11 8 32 32 H 1.09000 * 113.86995 * 269.68082 * 12 11 8 33 33 H 0.96698 * 114.00098 * 171.44601 * 14 13 12 34 34 H 0.97007 * 119.99483 * 5.87247 * 18 17 15 35 35 H 1.08994 * 113.77423 * 90.33548 * 23 11 8 36 36 H 1.09010 * 113.76672 * 318.93394 * 23 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0057 5 6 4.2717 -0.0002 -0.0062 6 6 3.5806 -1.1971 -0.0005 7 6 2.1980 -1.1970 0.0052 8 16 1.3170 -2.7229 0.0126 9 8 2.2966 -3.7517 0.0452 10 8 0.3302 -2.6214 -1.0049 11 7 0.4993 -2.8100 1.4499 12 6 -0.8396 -2.3882 1.9055 13 6 -0.7043 -3.4830 2.9793 14 8 -1.2201 -4.7527 2.5746 15 6 -1.1884 -3.0594 4.3421 16 1 -1.6565 -2.0950 4.4731 17 6 -1.0338 -3.9030 5.4216 18 7 -0.2348 -4.9440 5.3335 19 14 -1.9589 -3.5674 7.0093 20 1 -1.6219 -4.6125 8.0090 21 1 -1.5698 -2.2348 7.5367 22 1 -3.4200 -3.5877 6.7445 23 6 0.8169 -3.3404 2.7900 24 1 -0.3634 0.0045 1.0277 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3634 -0.8922 -0.5100 27 1 1.6584 2.1327 0.0007 28 1 4.1204 2.1325 -0.0094 29 1 5.3517 -0.0002 -0.0111 30 1 4.1205 -2.1325 -0.0005 31 1 -1.6308 -2.5794 1.1805 32 1 -0.8694 -1.3767 2.3106 33 1 -1.0216 -5.4720 3.1896 34 1 0.3102 -5.0713 4.5412 35 1 1.2756 -2.6086 3.4549 36 1 1.3484 -4.2920 2.7712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331898859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:44 Heat of formation + Delta-G solvation = -59.498211 kcal Electronic energy + Delta-G solvation = -22612.432751 eV Core-core repulsion = 19190.015906 eV Total energy + Delta-G solvation = -3422.416845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.38742 -38.83022 -36.98949 -35.53924 -34.32570 -32.92812 -32.35494 -31.28765 -27.67455 -27.12483 -25.47525 -24.40292 -23.21090 -21.79508 -19.94701 -18.58958 -18.13212 -17.47431 -16.77969 -16.03274 -15.84392 -15.02053 -14.87378 -14.55062 -14.31558 -14.05901 -13.90379 -13.38391 -13.29628 -13.18599 -12.59447 -12.50791 -12.38969 -12.14287 -11.80311 -11.72792 -11.44132 -11.35353 -11.26487 -11.05547 -10.87034 -10.51514 -10.45612 -10.20835 -9.46056 -9.29611 -8.89315 -8.84914 -8.66340 -8.05780 -6.66007 -4.45759 0.59393 0.86885 1.20181 3.17302 3.30985 3.35633 3.49676 3.53258 4.07147 4.33312 4.42973 4.64859 4.72676 4.78825 4.85327 5.09687 5.16967 5.27394 5.43364 5.53690 5.63476 5.76127 5.77178 5.80207 6.00964 6.08645 6.15344 6.20399 6.22783 6.27726 6.43833 6.52054 6.72150 6.77173 7.27019 7.68378 8.10005 8.46713 8.88743 9.24555 10.65448 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.005077 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.894925 B = 5513.527163 C = 5870.023623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.024 3.976 3 C -0.147 4.147 4 C -0.067 4.067 5 C -0.151 4.151 6 C -0.020 4.020 7 C -0.681 4.681 8 S 2.701 3.299 9 O -0.963 6.963 10 O -0.960 6.960 11 N -1.023 6.023 12 C 0.141 3.859 13 C 0.224 3.776 14 O -0.566 6.566 15 C -0.617 4.617 16 H 0.065 0.935 17 C 0.036 3.964 18 N -0.897 5.897 19 Si 1.067 2.933 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.284 1.284 23 C 0.097 3.903 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.141 0.859 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.376 0.624 34 H 0.270 0.730 35 H 0.083 0.917 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.301 10.958 -7.135 14.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.022 3.978 3 C -0.165 4.165 4 C -0.085 4.085 5 C -0.170 4.170 6 C -0.039 4.039 7 C -0.766 4.766 8 S 2.794 3.206 9 O -0.954 6.954 10 O -0.951 6.951 11 N -0.863 5.863 12 C 0.016 3.984 13 C 0.180 3.820 14 O -0.373 6.373 15 C -0.655 4.655 16 H 0.083 0.917 17 C -0.170 4.170 18 N -0.533 5.533 19 Si 0.893 3.107 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.210 1.210 23 C -0.029 4.029 24 H 0.109 0.891 25 H 0.100 0.900 26 H 0.124 0.876 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.159 0.841 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.225 0.775 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.939 10.109 -7.057 13.281 hybrid contribution 1.158 1.305 -0.874 1.951 sum 6.097 11.414 -7.931 15.178 Atomic orbital electron populations 1.21775 0.90470 1.06652 1.04546 1.19588 0.96001 0.91832 0.90331 1.21172 0.94472 0.97691 1.03212 1.21401 0.94418 0.98228 0.94496 1.21245 1.00213 0.92493 1.03080 1.20984 0.92090 0.99446 0.91423 1.31246 1.06509 1.20968 1.17869 1.01716 0.72782 0.73410 0.72718 1.93515 1.61261 1.54085 1.86497 1.93482 1.59146 1.86866 1.55559 1.60192 1.27112 1.73606 1.25431 1.23004 0.81348 0.98611 0.95451 1.20143 0.87556 0.82218 0.92075 1.86231 1.79909 1.18985 1.52179 1.22256 1.44542 1.06407 0.92344 0.91663 1.25967 0.95584 0.92745 1.02680 1.70925 1.21958 1.29055 1.31388 0.83587 0.76061 0.76048 0.74961 1.20606 1.21239 1.21018 1.24059 1.02824 0.97731 0.78266 0.89135 0.89976 0.87590 0.85286 0.85485 0.85277 0.84148 0.90387 0.89510 0.77503 0.91788 0.89881 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 8.63 36.00 0.31 -2.08 16 2 C 0.02 0.34 5.87 -104.62 -0.61 -0.27 16 3 C -0.15 -1.77 9.70 -39.59 -0.38 -2.15 16 4 C -0.07 -0.74 10.05 -39.58 -0.40 -1.13 16 5 C -0.15 -1.80 10.05 -39.58 -0.40 -2.20 16 6 C -0.02 -0.29 9.55 -39.59 -0.38 -0.67 16 7 C -0.68 -10.98 5.91 -39.58 -0.23 -11.21 16 8 S 2.70 50.79 5.55 -107.50 -0.60 50.19 16 9 O -0.96 -20.16 16.94 -57.17 -0.97 -21.13 16 10 O -0.96 -19.35 15.32 -57.17 -0.88 -20.23 16 11 N -1.02 -20.02 4.00 -118.67 -0.48 -20.49 16 12 C 0.14 2.75 7.04 -2.97 -0.02 2.73 16 13 C 0.22 5.15 1.08 -90.84 -0.10 5.05 16 14 O -0.57 -13.80 13.45 -35.23 -0.47 -14.27 16 15 C -0.62 -15.19 8.56 -34.44 -0.29 -15.49 16 16 H 0.07 1.57 7.85 -52.49 -0.41 1.15 16 17 C 0.04 0.92 5.26 -17.82 -0.09 0.82 16 18 N -0.90 -23.58 12.80 55.43 0.71 -22.87 16 19 Si 1.07 22.44 29.93 -169.99 -5.09 17.35 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 21 H -0.29 -5.76 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 C 0.10 2.06 7.40 -2.97 -0.02 2.03 16 24 H 0.09 1.15 6.25 -51.93 -0.32 0.82 16 25 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 26 H 0.11 1.64 4.79 -51.93 -0.25 1.39 16 27 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 28 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.14 1.94 7.33 -52.48 -0.38 1.55 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.09 1.49 6.74 -51.93 -0.35 1.14 16 33 H 0.38 9.02 6.95 45.56 0.32 9.34 16 34 H 0.27 6.96 5.52 -40.82 -0.23 6.73 16 35 H 0.08 1.70 8.09 -51.93 -0.42 1.28 16 36 H 0.07 1.51 7.80 -51.92 -0.41 1.11 16 LS Contribution 310.17 15.07 4.67 4.67 Total: -1.00 -30.57 310.17 -9.08 -39.65 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -3.36 Total: 11.70 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -2.63 Total: -24.57 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.23 Total: -43.37 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -2.32 Total: -55.63 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.09 Total: 17.35 kcal Atomic # 16 Polarization: 50.79 SS G_CDS: -0.60 Total: 50.19 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.57 -9.08 -39.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331898859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.850 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds