Wall clock time and date at job start Tue Mar 31 2020 03:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 120.00386 * 2 1 4 4 C 1.38207 * 120.00018 * 180.27168 * 3 2 1 5 5 C 1.38259 * 120.00170 * 359.75363 * 4 3 2 6 6 C 1.38212 * 119.99885 * 359.97422 * 5 4 3 7 7 C 1.38222 * 119.99862 * 179.74969 * 2 1 3 8 8 S 1.76200 * 119.99779 * 359.97438 * 7 2 1 9 9 O 1.42096 * 106.39882 * 181.18728 * 8 7 2 10 10 O 1.42103 * 106.40193 * 48.27201 * 8 7 2 11 11 N 1.65593 * 107.22178 * 294.73145 * 8 7 2 12 12 C 1.47584 * 134.49803 * 89.99723 * 11 8 7 13 13 C 1.53946 * 86.12025 * 155.36171 * 12 11 8 14 14 O 1.42897 * 113.74068 * 269.15867 * 13 12 11 15 15 C 1.50700 * 113.74246 * 137.95222 * 13 12 11 16 16 H 1.07998 * 119.99659 * 4.91778 * 15 13 12 17 17 C 1.37870 * 120.00275 * 184.91298 * 15 13 12 18 18 N 1.31521 * 119.99939 * 13.83955 * 17 15 13 19 19 Si 1.86793 * 120.00241 * 193.83635 * 17 15 13 20 20 H 1.48503 * 109.47305 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47166 * 299.99995 * 19 17 15 22 22 H 1.48499 * 109.46987 * 59.99962 * 19 17 15 23 23 C 1.47585 * 134.49149 * 270.00557 * 11 8 7 24 24 H 1.09003 * 109.47242 * 270.25335 * 1 2 3 25 25 H 1.09006 * 109.47040 * 30.25022 * 1 2 3 26 26 H 1.09003 * 109.47200 * 150.24970 * 1 2 3 27 27 H 1.08003 * 119.99794 * 0.04546 * 3 2 1 28 28 H 1.07999 * 119.99927 * 179.77084 * 4 3 2 29 29 H 1.08002 * 120.00257 * 179.97438 * 5 4 3 30 30 H 1.08008 * 120.00217 * 180.02562 * 6 5 4 31 31 H 1.09003 * 113.76727 * 41.05741 * 12 11 8 32 32 H 1.09000 * 113.86995 * 269.68082 * 12 11 8 33 33 H 0.96698 * 114.00098 * 171.44601 * 14 13 12 34 34 H 0.97007 * 119.99483 * 5.87247 * 18 17 15 35 35 H 1.08994 * 113.77423 * 90.33548 * 23 11 8 36 36 H 1.09010 * 113.76672 * 318.93394 * 23 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0057 5 6 4.2717 -0.0002 -0.0062 6 6 3.5806 -1.1971 -0.0005 7 6 2.1980 -1.1970 0.0052 8 16 1.3170 -2.7229 0.0126 9 8 2.2966 -3.7517 0.0452 10 8 0.3302 -2.6214 -1.0049 11 7 0.4993 -2.8100 1.4499 12 6 -0.8396 -2.3882 1.9055 13 6 -0.7043 -3.4830 2.9793 14 8 -1.2201 -4.7527 2.5746 15 6 -1.1884 -3.0594 4.3421 16 1 -1.6565 -2.0950 4.4731 17 6 -1.0338 -3.9030 5.4216 18 7 -0.2348 -4.9440 5.3335 19 14 -1.9589 -3.5674 7.0093 20 1 -1.6219 -4.6125 8.0090 21 1 -1.5698 -2.2348 7.5367 22 1 -3.4200 -3.5877 6.7445 23 6 0.8169 -3.3404 2.7900 24 1 -0.3634 0.0045 1.0277 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3634 -0.8922 -0.5100 27 1 1.6584 2.1327 0.0007 28 1 4.1204 2.1325 -0.0094 29 1 5.3517 -0.0002 -0.0111 30 1 4.1205 -2.1325 -0.0005 31 1 -1.6308 -2.5794 1.1805 32 1 -0.8694 -1.3767 2.3106 33 1 -1.0216 -5.4720 3.1896 34 1 0.3102 -5.0713 4.5412 35 1 1.2756 -2.6086 3.4549 36 1 1.3484 -4.2920 2.7712 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331898859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:44 Heat of formation + Delta-G solvation = -82.241494 kcal Electronic energy + Delta-G solvation = -22613.418974 eV Core-core repulsion = 19190.015906 eV Total energy + Delta-G solvation = -3423.403068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56062 -40.35100 -38.53717 -37.10926 -36.13450 -34.27594 -33.93114 -32.28966 -29.41124 -28.15846 -27.08911 -26.20534 -24.26283 -22.80454 -21.69196 -20.12346 -19.82020 -18.85140 -18.30827 -17.43208 -16.87514 -16.69506 -16.35734 -15.97052 -15.65823 -15.50595 -15.26387 -14.95935 -14.81000 -14.24135 -14.13079 -13.80256 -13.61627 -13.43989 -13.33779 -13.15604 -13.13383 -12.82820 -12.70689 -12.51761 -12.29179 -12.27562 -11.88572 -11.65599 -11.08621 -10.69084 -10.47786 -10.36320 -9.87739 -9.78549 -8.62080 -6.42641 -0.80114 -0.24524 0.23344 1.63556 1.68003 1.75845 1.88700 2.43297 2.59551 2.66843 2.95373 3.05938 3.42356 3.63292 3.74267 3.96709 4.02547 4.10289 4.23007 4.26665 4.45590 4.51632 4.53581 4.60228 4.67665 4.73193 4.84318 4.87648 4.99633 5.10057 5.19412 5.28613 5.31290 5.57597 5.82743 5.84203 6.15140 6.49646 6.98196 7.34692 8.69869 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.005077 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.894925 B = 5513.527163 C = 5870.023623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.007 3.993 3 C -0.146 4.146 4 C -0.056 4.056 5 C -0.149 4.149 6 C -0.044 4.044 7 C -0.695 4.695 8 S 2.709 3.291 9 O -0.995 6.995 10 O -0.980 6.980 11 N -1.027 6.027 12 C 0.149 3.851 13 C 0.197 3.803 14 O -0.578 6.578 15 C -0.625 4.625 16 H 0.070 0.930 17 C -0.006 4.006 18 N -0.922 5.922 19 Si 1.112 2.888 20 H -0.289 1.289 21 H -0.268 1.268 22 H -0.275 1.275 23 C 0.104 3.896 24 H 0.095 0.905 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.162 0.838 28 H 0.171 0.829 29 H 0.161 0.839 30 H 0.135 0.865 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.372 0.628 34 H 0.263 0.737 35 H 0.090 0.910 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.956 14.419 -7.090 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.005 3.995 3 C -0.165 4.165 4 C -0.073 4.073 5 C -0.168 4.168 6 C -0.063 4.063 7 C -0.785 4.785 8 S 2.807 3.193 9 O -0.986 6.986 10 O -0.971 6.971 11 N -0.866 5.866 12 C 0.025 3.975 13 C 0.154 3.846 14 O -0.385 6.385 15 C -0.664 4.664 16 H 0.088 0.912 17 C -0.207 4.207 18 N -0.559 5.559 19 Si 0.934 3.066 20 H -0.215 1.215 21 H -0.193 1.193 22 H -0.201 1.201 23 C -0.022 4.022 24 H 0.114 0.886 25 H 0.129 0.871 26 H 0.099 0.901 27 H 0.180 0.820 28 H 0.188 0.812 29 H 0.179 0.821 30 H 0.153 0.847 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.221 0.779 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.557 13.533 -7.025 16.229 hybrid contribution 1.041 0.338 -0.984 1.472 sum 6.597 13.871 -8.009 17.323 Atomic orbital electron populations 1.21800 0.90188 1.06840 1.04920 1.19844 0.96546 0.92198 0.90898 1.21606 0.95298 0.97818 1.01752 1.21959 0.94237 0.99520 0.91622 1.21656 1.01903 0.91690 1.01525 1.21165 0.91655 1.00826 0.92677 1.30620 1.07010 1.19390 1.21527 1.01013 0.72288 0.74058 0.71908 1.93466 1.61855 1.56547 1.86713 1.93458 1.60141 1.87569 1.55944 1.59999 1.27414 1.74327 1.24861 1.23032 0.81457 0.98711 0.94297 1.20498 0.88700 0.82407 0.92953 1.86218 1.80350 1.19643 1.52305 1.22530 1.44185 1.06591 0.93080 0.91172 1.27140 0.95695 0.92395 1.05518 1.71002 1.23197 1.30285 1.31420 0.82989 0.75432 0.76409 0.71772 1.21516 1.19306 1.20092 1.23800 1.01563 0.97420 0.79413 0.88644 0.87091 0.90054 0.82010 0.81201 0.82129 0.84683 0.90313 0.86825 0.77907 0.92592 0.89225 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.53 8.63 71.23 0.61 -3.91 16 2 C 0.01 0.18 5.87 -19.86 -0.12 0.06 16 3 C -0.15 -2.89 9.70 22.27 0.22 -2.68 16 4 C -0.06 -0.94 10.05 22.27 0.22 -0.72 16 5 C -0.15 -3.02 10.05 22.27 0.22 -2.79 16 6 C -0.04 -1.22 9.55 22.27 0.21 -1.01 16 7 C -0.70 -21.96 5.91 22.27 0.13 -21.83 16 8 S 2.71 104.54 5.55 -56.49 -0.31 104.22 16 9 O -0.99 -43.46 16.94 -128.00 -2.17 -45.63 16 10 O -0.98 -40.58 15.32 -128.00 -1.96 -42.54 16 11 N -1.03 -40.91 4.00 -533.17 -2.14 -43.04 16 12 C 0.15 5.83 7.04 86.48 0.61 6.44 16 13 C 0.20 9.23 1.08 -10.88 -0.01 9.22 16 14 O -0.58 -29.17 13.45 -148.98 -2.00 -31.18 16 15 C -0.63 -30.76 8.56 25.60 0.22 -30.54 16 16 H 0.07 3.30 7.85 -2.91 -0.02 3.28 16 17 C -0.01 -0.32 5.26 84.65 0.45 0.13 16 18 N -0.92 -49.42 12.80 21.45 0.27 -49.14 16 19 Si 1.11 44.81 29.93 68.60 2.05 46.86 16 20 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 22 H -0.28 -10.62 7.11 99.48 0.71 -9.91 16 23 C 0.10 4.54 7.40 86.48 0.64 5.18 16 24 H 0.10 2.22 6.25 -2.39 -0.01 2.21 16 25 H 0.11 2.03 8.09 -2.38 -0.02 2.01 16 26 H 0.08 2.47 4.79 -2.39 -0.01 2.46 16 27 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 28 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 29 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 30 H 0.14 3.77 7.33 -2.91 -0.02 3.75 16 31 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.11 3.76 6.74 -2.39 -0.02 3.74 16 33 H 0.37 18.77 6.95 -74.06 -0.52 18.25 16 34 H 0.26 14.05 5.52 -92.70 -0.51 13.54 16 35 H 0.09 3.73 8.09 -2.39 -0.02 3.71 16 36 H 0.06 2.55 7.80 -2.38 -0.02 2.53 16 Total: -1.00 -67.21 310.17 -1.99 -69.20 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.86 Total: 33.71 kcal Atomic # 6 Polarization: -45.86 SS G_CDS: 3.41 Total: -42.45 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -1.86 Total: -92.19 kcal Atomic # 8 Polarization: -113.22 SS G_CDS: -6.13 Total: -119.35 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.05 Total: 46.86 kcal Atomic # 16 Polarization: 104.54 SS G_CDS: -0.31 Total: 104.22 kcal Total: -67.21 -1.99 -69.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331898859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.044 kcal (2) G-P(sol) polarization free energy of solvation -67.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds