Wall clock time and date at job start Tue Mar 31 2020 03:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 S 1.76207 * 120.00104 * 179.76782 * 6 5 4 8 8 O 1.42100 * 104.27655 * 26.09262 * 7 6 5 9 9 O 1.42101 * 104.27762 * 153.95276 * 7 6 5 10 10 C 1.81397 * 104.44962 * 270.02167 * 7 6 5 11 11 C 1.50695 * 109.47377 * 179.97438 * 10 7 6 12 12 O 1.21297 * 119.99815 * 0.02562 * 11 10 7 13 13 N 1.34775 * 120.00434 * 179.97438 * 11 10 7 14 14 C 1.37100 * 120.00349 * 179.97438 * 13 11 10 15 15 H 1.07998 * 119.99808 * 0.02562 * 14 13 11 16 16 C 1.38944 * 120.00170 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00216 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00044 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46982 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47053 * 120.00492 * 18 16 14 21 21 H 1.48498 * 109.47105 * 240.00522 * 18 16 14 22 22 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 23 23 C 1.38230 * 119.99880 * 359.95582 * 22 6 5 24 24 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 29 29 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 30 30 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 31 31 H 1.08999 * 109.47259 * 300.00218 * 10 7 6 32 32 H 1.09005 * 109.47189 * 59.99306 * 10 7 6 33 33 H 0.97001 * 119.99665 * 0.02562 * 13 11 10 34 34 H 0.97003 * 120.00673 * 179.97438 * 17 16 14 35 35 H 1.08008 * 119.99983 * 179.97438 * 22 6 5 36 36 H 1.08007 * 119.99843 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 16 3.5417 5.6885 0.0001 8 8 3.0878 6.2206 -1.2369 9 8 3.0879 6.2205 1.2371 10 6 5.3487 5.5297 0.0001 11 6 5.9735 6.9010 -0.0005 12 8 5.2690 7.8884 -0.0004 13 7 7.3150 7.0304 -0.0001 14 6 7.8834 8.2781 -0.0012 15 1 7.2561 9.1572 -0.0019 16 6 9.2664 8.4114 -0.0002 17 7 10.0297 7.3417 0.0012 18 14 10.0409 10.1114 -0.0009 19 1 8.9720 11.1422 -0.0019 20 1 10.8823 10.2725 1.2121 21 1 10.8839 10.2707 -1.2130 22 6 2.7240 3.3755 1.1972 23 6 2.2628 2.0724 1.1971 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0927 1.5598 -2.1325 30 1 2.9047 3.8844 -2.1324 31 1 5.6657 4.9860 0.8900 32 1 5.6656 4.9860 -0.8899 33 1 7.8784 6.2408 0.0002 34 1 10.9953 7.4347 0.0015 35 1 2.9041 3.8846 2.1326 36 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340792947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:54 Heat of formation + Delta-G solvation = -118.806382 kcal Electronic energy + Delta-G solvation = -21074.400136 eV Core-core repulsion = 17649.411496 eV Total energy + Delta-G solvation = -3424.988640 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45237 -40.32448 -38.18302 -37.00158 -36.25443 -35.22150 -33.55801 -32.05114 -31.35246 -30.53627 -26.85511 -25.23556 -23.87728 -22.27122 -21.73079 -20.33650 -19.88597 -19.00568 -17.76363 -17.35281 -17.31559 -16.63197 -16.41137 -16.39907 -15.72364 -15.71845 -15.44018 -14.69619 -14.62790 -14.55422 -14.30701 -13.73418 -13.68893 -13.63661 -13.15455 -13.09041 -13.03788 -12.95425 -12.54072 -12.35155 -12.33362 -12.18867 -12.03225 -11.74105 -11.68035 -11.53048 -10.91002 -10.20432 -10.12198 -10.04692 -8.59801 -6.10496 -1.05983 -0.21824 0.30646 1.28971 1.40959 1.55402 1.75638 1.97972 2.22356 2.40425 2.75397 3.03226 3.10677 3.16878 3.73330 3.73640 3.95560 3.97925 3.97987 4.27093 4.34290 4.35874 4.48144 4.51682 4.60257 4.82046 4.93632 5.08685 5.08794 5.10607 5.20492 5.32572 5.39297 5.52456 5.79655 5.86891 6.34353 6.93174 7.27902 7.81595 8.56921 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.034385 B = 0.003203 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.106934 B = 8738.439465 C = 9074.844166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.028 4.028 4 C -0.141 4.141 5 C -0.035 4.035 6 C -0.669 4.669 7 S 2.536 3.464 8 O -0.970 6.970 9 O -0.970 6.970 10 C -0.619 4.619 11 C 0.441 3.559 12 O -0.639 6.639 13 N -0.542 5.542 14 C -0.346 4.346 15 H 0.085 0.915 16 C -0.004 4.004 17 N -0.908 5.908 18 Si 0.997 3.003 19 H -0.273 1.273 20 H -0.266 1.266 21 H -0.266 1.266 22 C -0.035 4.035 23 C -0.141 4.141 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.159 0.841 30 H 0.146 0.854 31 H 0.186 0.814 32 H 0.186 0.814 33 H 0.405 0.595 34 H 0.284 0.716 35 H 0.147 0.853 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.819 -20.296 -0.004 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.028 4.028 4 C -0.159 4.159 5 C -0.054 4.054 6 C -0.759 4.759 7 S 2.719 3.281 8 O -0.967 6.967 9 O -0.967 6.967 10 C -0.750 4.750 11 C 0.227 3.773 12 O -0.529 6.529 13 N -0.176 5.176 14 C -0.476 4.476 15 H 0.102 0.898 16 C -0.206 4.206 17 N -0.548 5.548 18 Si 0.820 3.180 19 H -0.198 1.198 20 H -0.191 1.191 21 H -0.191 1.191 22 C -0.054 4.054 23 C -0.159 4.159 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.176 0.824 30 H 0.164 0.836 31 H 0.204 0.796 32 H 0.204 0.796 33 H 0.240 0.760 34 H 0.093 0.907 35 H 0.164 0.836 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.515 -18.927 -0.002 22.690 hybrid contribution 1.199 0.003 0.000 1.199 sum -11.316 -18.923 -0.002 22.049 Atomic orbital electron populations 1.21763 0.93853 1.02920 1.02062 1.20765 0.96675 0.90325 1.04955 1.20687 0.92001 0.97299 0.92854 1.21510 1.00698 0.94108 0.99605 1.21217 0.92705 0.95024 0.96461 1.30210 1.21100 1.23605 1.01008 1.03841 0.76503 0.74396 0.73348 1.93454 1.79102 1.78066 1.46100 1.93454 1.79106 1.78071 1.46094 1.30453 1.24888 1.03518 1.16128 1.19437 0.83764 0.89040 0.85026 1.90638 1.61912 1.41139 1.59236 1.41780 1.04628 1.09389 1.61845 1.19866 0.91132 0.85619 1.50942 0.89750 1.26146 0.95792 1.03470 0.95185 1.69652 1.06412 1.30415 1.48288 0.84818 0.77944 0.76567 0.78708 1.19802 1.19108 1.19096 1.21221 0.92702 0.95026 0.96462 1.21508 1.00678 0.94130 0.99608 0.92873 0.92862 0.90515 0.89043 0.89044 0.82355 0.83580 0.79645 0.79646 0.76022 0.90665 0.83578 0.82359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.89 71.98 0.71 -0.60 16 2 C -0.09 -0.80 6.06 29.85 0.18 -0.62 16 3 C -0.03 -0.43 5.13 -19.87 -0.10 -0.53 16 4 C -0.14 -2.40 9.70 22.27 0.22 -2.19 16 5 C -0.04 -0.80 9.47 22.27 0.21 -0.59 16 6 C -0.67 -17.78 5.66 22.27 0.13 -17.66 16 7 S 2.54 91.75 4.29 -56.49 -0.24 91.50 16 8 O -0.97 -41.47 17.13 -127.64 -2.19 -43.65 16 9 O -0.97 -41.47 17.13 -127.64 -2.19 -43.65 16 10 C -0.62 -20.50 6.46 71.23 0.46 -20.04 16 11 C 0.44 21.61 7.80 87.66 0.68 22.30 16 12 O -0.64 -37.29 15.44 -3.08 -0.05 -37.34 16 13 N -0.54 -27.78 5.29 -306.99 -1.62 -29.40 16 14 C -0.35 -19.62 9.68 84.04 0.81 -18.81 16 15 H 0.08 5.13 7.16 -2.91 -0.02 5.11 16 16 C 0.00 -0.22 5.50 84.93 0.47 0.25 16 17 N -0.91 -47.29 13.05 21.66 0.28 -47.00 16 18 Si 1.00 42.03 29.55 68.60 2.03 44.05 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 22 C -0.04 -0.80 9.47 22.27 0.21 -0.59 16 23 C -0.14 -2.40 9.70 22.27 0.22 -2.19 16 24 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 27 H 0.09 0.60 8.09 -2.39 -0.02 0.58 16 28 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 29 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.15 3.14 7.57 -2.91 -0.02 3.12 16 31 H 0.19 4.60 8.14 -2.39 -0.02 4.58 16 32 H 0.19 4.60 8.14 -2.39 -0.02 4.58 16 33 H 0.40 18.95 7.90 -92.71 -0.73 18.21 16 34 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 35 H 0.15 3.14 7.57 -2.91 -0.02 3.12 16 36 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -80.63 329.24 0.59 -80.04 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.37 Total: 26.71 kcal Atomic # 6 Polarization: -45.46 SS G_CDS: 4.20 Total: -41.26 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -1.34 Total: -76.40 kcal Atomic # 8 Polarization: -120.23 SS G_CDS: -4.42 Total: -124.65 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 91.75 SS G_CDS: -0.24 Total: 91.50 kcal Total: -80.63 0.59 -80.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340792947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.763 kcal (2) G-P(sol) polarization free energy of solvation -80.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds