Wall clock time and date at job start Tue Mar 31 2020 03:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47715 * 2 1 4 4 C 1.50700 * 109.46937 * 120.00720 * 2 1 3 5 5 N 1.29431 * 124.80083 * 299.96453 * 4 2 1 6 6 C 1.30944 * 117.36540 * 180.02562 * 5 4 2 7 7 C 1.35664 * 114.18872 * 359.97438 * 6 5 4 8 8 C 1.46684 * 126.12788 * 179.97438 * 7 6 5 9 9 O 1.21694 * 119.99829 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00162 * 0.02643 * 8 7 6 11 11 C 1.46502 * 119.99951 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47152 * 180.02562 * 11 10 8 13 13 O 1.21293 * 119.99764 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00473 * 179.97438 * 12 11 10 15 15 C 1.37085 * 120.00265 * 180.02562 * 14 12 11 16 16 H 1.07999 * 120.00552 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00091 * 180.02562 * 15 14 12 18 18 N 1.31412 * 119.99783 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00229 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47644 * 89.99747 * 19 17 15 21 21 H 1.48510 * 109.47045 * 209.99898 * 19 17 15 22 22 H 1.48503 * 109.47063 * 329.99693 * 19 17 15 23 23 S 1.70947 * 124.80857 * 119.99738 * 4 2 1 24 24 H 1.09002 * 109.46352 * 300.00000 * 1 2 3 25 25 H 1.09002 * 109.46597 * 59.99544 * 1 2 3 26 26 H 1.08994 * 109.47155 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47067 * 239.99809 * 2 1 3 28 28 H 1.09002 * 109.47007 * 300.00211 * 3 2 1 29 29 H 1.09002 * 109.46754 * 60.00249 * 3 2 1 30 30 H 1.08993 * 109.47339 * 179.97438 * 3 2 1 31 31 H 1.07999 * 122.90578 * 179.73662 * 6 5 4 32 32 H 0.96999 * 120.00308 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47279 * 300.00223 * 11 10 8 34 34 H 1.08994 * 109.47391 * 60.00349 * 11 10 8 35 35 H 0.97006 * 119.99212 * 359.97438 * 14 12 11 36 36 H 0.97007 * 119.99890 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0323 -0.7106 1.2304 5 7 1.7780 -0.3500 2.4472 6 6 2.2910 -1.0750 3.4094 7 6 3.0330 -2.1258 2.9786 8 6 3.7242 -3.1022 3.8274 9 8 4.3625 -4.0056 3.3199 10 7 3.6525 -2.9990 5.1693 11 6 4.3424 -3.9745 6.0170 12 6 4.1048 -3.6374 7.4664 13 8 3.4255 -2.6771 7.7622 14 7 4.6461 -4.4037 8.4341 15 6 4.4295 -4.0973 9.7526 16 1 3.8254 -3.2417 10.0161 17 6 4.9881 -4.8870 10.7502 18 7 5.7236 -5.9278 10.4297 19 14 4.6924 -4.4700 12.5468 20 1 3.4712 -5.1682 13.0227 21 1 5.8591 -4.9071 13.3550 22 1 4.5118 -3.0030 12.6913 23 16 3.0192 -2.1063 1.2166 24 1 -0.3632 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6768 1.9563 -0.8900 29 1 1.6769 1.9562 0.8900 30 1 3.1301 1.4423 0.0005 31 1 2.1399 -0.8532 4.4555 32 1 3.1434 -2.2792 5.5738 33 1 3.9579 -4.9730 5.8088 34 1 5.4116 -3.9460 5.8076 35 1 5.1884 -5.1724 8.1974 36 1 6.1132 -6.4793 11.1261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343516606.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:26 Heat of formation + Delta-G solvation = -42.823100 kcal Electronic energy + Delta-G solvation = -20418.547150 eV Core-core repulsion = 17029.146144 eV Total energy + Delta-G solvation = -3389.401007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32402 -39.30935 -38.10945 -35.73139 -34.54711 -33.76367 -31.45072 -30.55131 -27.55480 -27.52673 -26.08994 -24.50369 -22.79947 -21.27301 -19.80696 -19.20187 -18.38769 -18.04228 -17.21179 -15.79339 -15.68096 -15.57407 -15.08018 -14.82197 -14.68292 -14.51907 -14.15377 -13.90628 -13.86003 -13.40876 -13.12701 -12.47503 -12.28757 -12.03385 -12.02457 -11.75095 -11.65301 -11.58259 -11.38030 -11.15049 -10.48369 -10.40716 -10.31333 -9.67345 -9.66249 -9.62127 -9.16006 -8.88682 -8.69298 -8.14200 -6.54904 -3.97052 0.09892 0.97068 1.49771 2.33758 3.09320 3.19355 3.19980 3.23832 3.32536 3.69101 3.74602 4.08483 4.43020 4.61047 4.68327 4.79698 4.84040 5.06406 5.13061 5.13469 5.29397 5.41381 5.48088 5.56064 5.76960 5.83248 5.86878 5.87867 5.99005 6.00255 6.50510 7.42845 7.42965 7.60510 7.87546 8.22520 8.40796 9.00809 9.34657 9.82149 10.61837 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.038106 B = 0.002580 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.614109 B =10851.920421 C =11395.467779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.018 4.018 3 C -0.141 4.141 4 C 0.044 3.956 5 N -0.472 5.472 6 C 0.095 3.905 7 C -0.289 4.289 8 C 0.591 3.409 9 O -0.544 6.544 10 N -0.693 5.693 11 C 0.110 3.890 12 C 0.427 3.573 13 O -0.597 6.597 14 N -0.547 5.547 15 C -0.306 4.306 16 H 0.106 0.894 17 C 0.026 3.974 18 N -0.894 5.894 19 Si 0.934 3.066 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.268 1.268 23 S 0.219 5.781 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.185 0.815 32 H 0.412 0.588 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.396 0.604 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.372 9.024 -20.408 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.040 4.040 3 C -0.199 4.199 4 C -0.231 4.231 5 N -0.186 5.186 6 C -0.063 4.063 7 C -0.414 4.414 8 C 0.376 3.624 9 O -0.423 6.423 10 N -0.346 5.346 11 C -0.017 4.017 12 C 0.212 3.788 13 O -0.484 6.484 14 N -0.181 5.181 15 C -0.435 4.435 16 H 0.124 0.876 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.760 3.240 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.193 1.193 23 S 0.478 5.522 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.202 0.798 32 H 0.251 0.749 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.230 0.770 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.117 8.675 -21.140 23.655 hybrid contribution -0.065 0.071 2.085 2.087 sum -6.182 8.746 -19.056 21.859 Atomic orbital electron populations 1.21816 0.92589 1.02516 1.03023 1.19886 0.97134 0.96216 0.90748 1.21814 1.01263 0.93844 1.03023 1.27591 1.00027 0.98245 0.97244 1.66041 1.23513 1.30601 0.98436 1.22302 0.93610 0.89953 1.00429 1.25738 1.12160 1.05495 0.98005 1.16644 0.80364 0.83586 0.81833 1.90836 1.42880 1.34526 1.74056 1.45436 1.52680 1.32025 1.04505 1.21021 0.98192 0.92744 0.89787 1.19675 0.86224 0.86566 0.86305 1.90501 1.44170 1.30911 1.82808 1.41785 1.44405 1.26282 1.05674 1.19733 1.30553 1.12779 0.80425 0.87614 1.25340 0.96030 0.95423 1.00914 1.69616 1.32679 1.16198 1.34877 0.85802 0.77891 0.79094 0.81186 1.20226 1.20768 1.19281 1.83996 1.43949 1.23786 1.00428 0.91254 0.91516 0.92423 0.89165 0.91515 0.91253 0.92424 0.79831 0.74946 0.89446 0.89437 0.76987 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.17 37.16 0.34 -0.59 16 2 C -0.02 -0.13 3.35 -91.77 -0.31 -0.44 16 3 C -0.14 -0.93 9.17 37.16 0.34 -0.59 16 4 C 0.04 0.45 5.90 -13.29 -0.08 0.37 16 5 N -0.47 -5.75 10.49 -11.50 -0.12 -5.87 16 6 C 0.10 1.21 10.93 -18.85 -0.21 1.00 16 7 C -0.29 -4.00 6.48 -37.09 -0.24 -4.24 16 8 C 0.59 9.75 7.79 -12.85 -0.10 9.65 16 9 O -0.54 -10.36 16.97 5.19 0.09 -10.27 16 10 N -0.69 -11.60 5.51 -62.80 -0.35 -11.95 16 11 C 0.11 2.00 6.15 -5.19 -0.03 1.97 16 12 C 0.43 9.63 7.85 -10.99 -0.09 9.55 16 13 O -0.60 -15.03 15.24 5.55 0.08 -14.94 16 14 N -0.55 -13.39 5.29 -10.97 -0.06 -13.45 16 15 C -0.31 -8.22 9.68 -14.94 -0.14 -8.37 16 16 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 18 N -0.89 -23.67 13.05 55.50 0.72 -22.95 16 19 Si 0.93 20.39 29.55 -169.99 -5.02 15.37 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 S 0.22 2.45 23.00 -107.50 -2.47 -0.02 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.49 8.12 -51.93 -0.42 0.07 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.18 2.08 7.15 -52.49 -0.38 1.70 16 32 H 0.41 6.67 6.15 -40.82 -0.25 6.42 16 33 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.40 9.31 7.90 -40.82 -0.32 8.99 16 36 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 332.31 15.07 5.01 5.01 Total: -1.00 -31.39 332.31 -6.99 -38.38 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -4.26 Total: 11.79 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -0.61 Total: 8.90 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.20 Total: -54.21 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: 0.17 Total: -25.22 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.47 Total: -0.02 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.39 -6.99 -38.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343516606.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.445 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds