Wall clock time and date at job start Tue Mar 31 2020 03:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47715 * 2 1 4 4 C 1.50700 * 109.46937 * 120.00720 * 2 1 3 5 5 N 1.29431 * 124.80083 * 299.96453 * 4 2 1 6 6 C 1.30944 * 117.36540 * 180.02562 * 5 4 2 7 7 C 1.35664 * 114.18872 * 359.97438 * 6 5 4 8 8 C 1.46684 * 126.12788 * 179.97438 * 7 6 5 9 9 O 1.21694 * 119.99829 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00162 * 0.02643 * 8 7 6 11 11 C 1.46502 * 119.99951 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47152 * 180.02562 * 11 10 8 13 13 O 1.21293 * 119.99764 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00473 * 179.97438 * 12 11 10 15 15 C 1.37085 * 120.00265 * 180.02562 * 14 12 11 16 16 H 1.07999 * 120.00552 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00091 * 180.02562 * 15 14 12 18 18 N 1.31412 * 119.99783 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00229 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47644 * 89.99747 * 19 17 15 21 21 H 1.48510 * 109.47045 * 209.99898 * 19 17 15 22 22 H 1.48503 * 109.47063 * 329.99693 * 19 17 15 23 23 S 1.70947 * 124.80857 * 119.99738 * 4 2 1 24 24 H 1.09002 * 109.46352 * 300.00000 * 1 2 3 25 25 H 1.09002 * 109.46597 * 59.99544 * 1 2 3 26 26 H 1.08994 * 109.47155 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47067 * 239.99809 * 2 1 3 28 28 H 1.09002 * 109.47007 * 300.00211 * 3 2 1 29 29 H 1.09002 * 109.46754 * 60.00249 * 3 2 1 30 30 H 1.08993 * 109.47339 * 179.97438 * 3 2 1 31 31 H 1.07999 * 122.90578 * 179.73662 * 6 5 4 32 32 H 0.96999 * 120.00308 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47279 * 300.00223 * 11 10 8 34 34 H 1.08994 * 109.47391 * 60.00349 * 11 10 8 35 35 H 0.97006 * 119.99212 * 359.97438 * 14 12 11 36 36 H 0.97007 * 119.99890 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0323 -0.7106 1.2304 5 7 1.7780 -0.3500 2.4472 6 6 2.2910 -1.0750 3.4094 7 6 3.0330 -2.1258 2.9786 8 6 3.7242 -3.1022 3.8274 9 8 4.3625 -4.0056 3.3199 10 7 3.6525 -2.9990 5.1693 11 6 4.3424 -3.9745 6.0170 12 6 4.1048 -3.6374 7.4664 13 8 3.4255 -2.6771 7.7622 14 7 4.6461 -4.4037 8.4341 15 6 4.4295 -4.0973 9.7526 16 1 3.8254 -3.2417 10.0161 17 6 4.9881 -4.8870 10.7502 18 7 5.7236 -5.9278 10.4297 19 14 4.6924 -4.4700 12.5468 20 1 3.4712 -5.1682 13.0227 21 1 5.8591 -4.9071 13.3550 22 1 4.5118 -3.0030 12.6913 23 16 3.0192 -2.1063 1.2166 24 1 -0.3632 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6768 1.9563 -0.8900 29 1 1.6769 1.9562 0.8900 30 1 3.1301 1.4423 0.0005 31 1 2.1399 -0.8532 4.4555 32 1 3.1434 -2.2792 5.5738 33 1 3.9579 -4.9730 5.8088 34 1 5.4116 -3.9460 5.8076 35 1 5.1884 -5.1724 8.1974 36 1 6.1132 -6.4793 11.1261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343516606.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:25 Heat of formation + Delta-G solvation = -65.589676 kcal Electronic energy + Delta-G solvation = -20419.534383 eV Core-core repulsion = 17029.146144 eV Total energy + Delta-G solvation = -3390.388239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.43373 -40.62500 -39.80535 -36.41127 -36.28859 -35.40346 -33.40729 -31.66301 -29.02976 -28.03556 -27.12244 -26.27025 -23.73405 -22.32097 -21.46561 -20.51516 -20.02530 -19.18626 -18.42455 -17.38068 -17.03925 -16.92867 -16.45492 -16.02551 -15.97777 -15.79038 -15.29745 -15.25325 -15.07910 -14.62778 -14.02210 -13.86365 -13.59691 -13.56225 -12.96973 -12.91962 -12.69111 -12.64798 -12.47006 -12.13582 -12.13151 -11.95776 -11.59721 -11.58699 -10.64158 -10.62892 -10.59936 -10.34228 -10.11508 -9.97949 -8.52612 -6.02802 -0.86945 0.04268 0.57541 1.30669 1.35533 1.42444 1.54842 1.87236 1.96113 2.02216 2.30104 2.94681 3.06684 3.14597 3.62663 3.74395 4.04523 4.08231 4.13501 4.19496 4.37641 4.38447 4.47068 4.80860 4.83670 4.96142 4.96816 5.08601 5.11213 5.35944 5.37128 5.41155 5.89463 6.26736 6.45996 6.51300 6.90810 7.01841 7.41510 7.91654 8.64184 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.038106 B = 0.002580 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.614109 B =10851.920421 C =11395.467779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.022 4.022 3 C -0.138 4.138 4 C 0.060 3.940 5 N -0.493 5.493 6 C 0.107 3.893 7 C -0.325 4.325 8 C 0.597 3.403 9 O -0.573 6.573 10 N -0.694 5.694 11 C 0.122 3.878 12 C 0.432 3.568 13 O -0.623 6.623 14 N -0.558 5.558 15 C -0.337 4.337 16 H 0.087 0.913 17 C -0.010 4.010 18 N -0.915 5.915 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.270 1.270 23 S 0.240 5.760 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.115 0.885 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.191 0.809 32 H 0.415 0.585 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.400 0.600 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.866 9.701 -21.732 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.044 4.044 3 C -0.197 4.197 4 C -0.214 4.214 5 N -0.207 5.207 6 C -0.052 4.052 7 C -0.450 4.450 8 C 0.383 3.617 9 O -0.455 6.455 10 N -0.347 5.347 11 C -0.005 4.005 12 C 0.219 3.781 13 O -0.511 6.511 14 N -0.193 5.193 15 C -0.466 4.466 16 H 0.105 0.895 17 C -0.211 4.211 18 N -0.555 5.555 19 Si 0.820 3.180 20 H -0.195 1.195 21 H -0.196 1.196 22 H -0.195 1.195 23 S 0.501 5.499 24 H 0.072 0.928 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.134 0.866 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.208 0.792 32 H 0.253 0.747 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.234 0.766 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.607 9.344 -22.491 25.235 hybrid contribution 0.031 -0.059 2.355 2.356 sum -6.576 9.285 -20.136 23.128 Atomic orbital electron populations 1.21815 0.91874 1.02536 1.03486 1.20194 0.97640 0.96557 0.90011 1.21813 1.01127 0.93284 1.03487 1.28302 0.98024 0.97296 0.97789 1.66136 1.24472 1.31037 0.99022 1.22465 0.92460 0.89252 1.01066 1.25521 1.14045 1.06049 0.99348 1.16875 0.79744 0.83502 0.81538 1.90812 1.44342 1.35905 1.74428 1.45411 1.52750 1.31839 1.04740 1.20859 0.99234 0.93631 0.86818 1.20341 0.84578 0.85390 0.87754 1.90479 1.44967 1.31906 1.83796 1.41828 1.45125 1.26859 1.05479 1.19733 1.31783 1.13137 0.81967 0.89526 1.26133 0.95362 0.95035 1.04591 1.69680 1.32932 1.16659 1.36244 0.84870 0.78187 0.78656 0.76293 1.19543 1.19643 1.19450 1.83882 1.43804 1.23903 0.98339 0.92810 0.89067 0.92636 0.86649 0.89067 0.92808 0.92638 0.79242 0.74654 0.88200 0.88191 0.76617 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.17 71.98 0.66 -0.84 16 2 C -0.02 -0.26 3.35 -11.54 -0.04 -0.30 16 3 C -0.14 -1.50 9.17 71.98 0.66 -0.84 16 4 C 0.06 1.14 5.90 88.46 0.52 1.66 16 5 N -0.49 -11.49 10.49 -190.30 -2.00 -13.49 16 6 C 0.11 2.66 10.93 84.23 0.92 3.58 16 7 C -0.33 -8.84 6.48 23.88 0.15 -8.68 16 8 C 0.60 19.57 7.79 86.45 0.67 20.24 16 9 O -0.57 -21.72 16.97 -4.33 -0.07 -21.80 16 10 N -0.69 -23.17 5.51 -470.82 -2.59 -25.77 16 11 C 0.12 4.41 6.15 85.63 0.53 4.94 16 12 C 0.43 19.72 7.85 87.66 0.69 20.41 16 13 O -0.62 -31.84 15.24 -3.07 -0.05 -31.89 16 14 N -0.56 -27.73 5.29 -306.99 -1.62 -29.35 16 15 C -0.34 -18.43 9.68 84.04 0.81 -17.62 16 16 H 0.09 4.99 7.16 -2.91 -0.02 4.96 16 17 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 18 N -0.92 -48.34 13.05 21.66 0.28 -48.05 16 19 Si 1.00 41.57 29.55 68.60 2.03 43.59 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 21 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 S 0.24 5.07 23.00 -56.49 -1.30 3.77 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.12 0.84 8.12 -2.39 -0.02 0.82 16 28 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.19 4.27 7.15 -2.91 -0.02 4.25 16 32 H 0.41 13.49 6.15 -92.71 -0.57 12.92 16 33 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 34 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.40 19.04 7.90 -92.70 -0.73 18.30 16 36 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -67.00 332.31 0.56 -66.44 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: -0.17 Total: 34.05 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 6.05 Total: 22.49 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -5.93 Total: -116.66 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -0.12 Total: -53.68 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -1.30 Total: 3.77 kcal Total: -67.00 0.56 -66.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343516606.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.849 kcal (2) G-P(sol) polarization free energy of solvation -66.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds