Wall clock time and date at job start Tue Mar 31 2020 03:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46991 * 2 1 4 4 C 1.50691 * 109.47423 * 120.00021 * 2 1 3 5 5 N 1.28654 * 124.71805 * 120.00296 * 4 2 1 6 6 C 1.33566 * 115.76569 * 180.02562 * 5 4 2 7 7 C 1.47263 * 123.14292 * 179.97438 * 6 5 4 8 8 O 1.21633 * 120.00132 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99630 * 359.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72408 * 9 7 6 11 11 C 1.50703 * 109.47138 * 180.28062 * 10 9 7 12 12 O 1.21293 * 120.00086 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00069 * 180.02562 * 11 10 9 14 14 C 1.37097 * 120.00084 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00027 * 359.97438 * 14 13 11 16 16 C 1.38954 * 119.99944 * 179.97438 * 14 13 11 17 17 N 1.31410 * 120.00276 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99680 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47135 * 90.00298 * 18 16 14 20 20 H 1.48500 * 109.46751 * 210.00274 * 18 16 14 21 21 H 1.48499 * 109.47283 * 330.00462 * 18 16 14 22 22 C 1.35210 * 113.71349 * 0.24497 * 6 5 4 23 23 S 1.70771 * 124.72334 * 300.00415 * 4 2 1 24 24 H 1.09003 * 109.47486 * 299.99635 * 1 2 3 25 25 H 1.09000 * 109.47455 * 59.99937 * 1 2 3 26 26 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47486 * 240.00365 * 2 1 3 28 28 H 1.09003 * 109.46707 * 59.99888 * 3 2 1 29 29 H 1.09001 * 109.47081 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47072 * 300.00298 * 3 2 1 31 31 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 32 32 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 33 33 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 34 34 H 0.97002 * 120.00050 * 359.97438 * 13 11 10 35 35 H 0.96997 * 119.99888 * 179.97438 * 17 16 14 36 36 H 1.08008 * 125.58193 * 179.75759 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.7751 -1.7607 1.2181 6 6 3.1166 -2.2444 2.4153 7 6 3.9603 -3.4386 2.5904 8 8 4.2359 -3.8299 3.7086 9 7 4.4263 -4.0985 1.5116 10 6 5.2707 -5.2829 1.6858 11 6 5.6603 -5.8252 0.3347 12 8 5.2706 -5.2765 -0.6744 13 7 6.4410 -6.9204 0.2477 14 6 6.7950 -7.4140 -0.9813 15 1 6.4480 -6.9254 -1.8798 16 6 7.6003 -8.5428 -1.0710 17 7 8.0221 -9.1376 0.0223 18 14 8.0821 -9.2157 -2.7457 19 1 9.3496 -8.5811 -3.1882 20 1 8.2706 -10.6858 -2.6528 21 1 7.0091 -8.9152 -3.7273 22 6 2.6103 -1.5386 3.4515 23 16 1.6949 -0.2333 2.8350 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 4.2062 -3.7867 0.6198 32 1 6.1686 -5.0107 2.2407 33 1 4.7193 -6.0443 2.2376 34 1 6.7523 -7.3594 1.0547 35 1 8.5839 -9.9258 -0.0404 36 1 2.7617 -1.7615 4.4974 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343516969.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:27 Heat of formation + Delta-G solvation = -44.535594 kcal Electronic energy + Delta-G solvation = -20653.592543 eV Core-core repulsion = 17264.117277 eV Total energy + Delta-G solvation = -3389.475266 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.53447 -38.93786 -37.96875 -35.77643 -34.45979 -33.66075 -31.36174 -30.26615 -28.15102 -27.56803 -25.71326 -24.47086 -22.86339 -20.84378 -19.86069 -19.48683 -18.48904 -18.03316 -16.71973 -16.10779 -15.60016 -15.49630 -15.14963 -14.75027 -14.63806 -14.47552 -14.04292 -13.75636 -13.57173 -13.29421 -13.11930 -12.57224 -12.21417 -12.15743 -12.02474 -11.92401 -11.61378 -11.58286 -11.29865 -11.10784 -10.44058 -10.30460 -10.07774 -9.93359 -9.82085 -9.61397 -9.10917 -8.73970 -8.60379 -8.07780 -6.49380 -3.91180 0.37450 1.04010 1.44121 1.93153 3.13425 3.23230 3.27769 3.37138 3.43612 3.75344 3.76797 4.13769 4.47039 4.66478 4.71183 4.89131 5.01557 5.10718 5.18734 5.18950 5.20712 5.41037 5.45457 5.61190 5.76038 5.84139 5.84384 5.92440 5.95878 6.08844 6.65204 7.28893 7.48299 7.85483 7.94117 8.38294 8.48226 9.06939 9.41412 9.89784 10.67656 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.024730 B = 0.002917 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.938470 B = 9596.965876 C =10537.836232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.022 4.022 3 C -0.148 4.148 4 C 0.035 3.965 5 N -0.437 5.437 6 C 0.018 3.982 7 C 0.589 3.411 8 O -0.545 6.545 9 N -0.686 5.686 10 C 0.107 3.893 11 C 0.429 3.571 12 O -0.593 6.593 13 N -0.550 5.550 14 C -0.304 4.304 15 H 0.106 0.894 16 C 0.025 3.975 17 N -0.896 5.896 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.268 1.268 22 C -0.229 4.229 23 S 0.199 5.801 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.421 0.579 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.396 0.604 35 H 0.274 0.726 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.675 19.242 4.976 24.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.044 4.044 3 C -0.206 4.206 4 C -0.245 4.245 5 N -0.152 5.152 6 C -0.117 4.117 7 C 0.372 3.628 8 O -0.423 6.423 9 N -0.340 5.340 10 C -0.021 4.021 11 C 0.214 3.786 12 O -0.479 6.479 13 N -0.185 5.185 14 C -0.434 4.434 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.536 5.536 18 Si 0.760 3.240 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.371 4.371 23 S 0.457 5.543 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.124 0.876 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.260 0.740 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.230 0.770 35 H 0.084 0.916 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -13.971 19.650 5.023 24.628 hybrid contribution 1.077 -1.495 -0.473 1.902 sum -12.894 18.155 4.550 22.728 Atomic orbital electron populations 1.21937 0.93069 1.02916 1.02680 1.19866 0.96133 0.95452 0.92959 1.21940 1.02033 0.93953 1.02679 1.27217 1.00658 0.96928 0.99687 1.66981 1.12049 1.10112 1.26043 1.20433 1.03896 1.00050 0.87283 1.17015 0.79464 0.81643 0.84688 1.90798 1.59677 1.67640 1.24208 1.45555 1.49867 1.28171 1.10357 1.21033 0.95567 0.87968 0.97497 1.19711 0.84955 0.84285 0.89651 1.90518 1.59223 1.61247 1.36909 1.41782 1.43075 1.23916 1.09695 1.19740 1.28461 1.09470 0.85688 0.87661 1.25323 0.96675 0.96491 0.99246 1.69615 1.35055 1.21114 1.27807 0.85811 0.79093 0.77763 0.81356 1.20272 1.20811 1.19294 1.26592 1.04068 1.00458 1.05938 1.82651 1.45759 1.25576 1.00358 0.92263 0.91007 0.91809 0.87594 0.92268 0.91806 0.91005 0.73961 0.89559 0.89546 0.77037 0.91614 0.79318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.09 37.15 0.34 -0.60 16 2 C -0.02 -0.18 3.34 -91.78 -0.31 -0.49 16 3 C -0.15 -0.94 9.09 37.16 0.34 -0.60 16 4 C 0.04 0.39 6.00 -13.61 -0.08 0.31 16 5 N -0.44 -6.36 10.12 -8.51 -0.09 -6.45 16 6 C 0.02 0.28 6.70 -84.52 -0.57 -0.29 16 7 C 0.59 10.61 7.80 -12.59 -0.10 10.51 16 8 O -0.54 -10.73 16.71 5.25 0.09 -10.64 16 9 N -0.69 -12.99 5.52 -62.61 -0.35 -13.34 16 10 C 0.11 2.09 6.15 -5.19 -0.03 2.06 16 11 C 0.43 10.23 7.85 -10.98 -0.09 10.14 16 12 O -0.59 -15.87 15.24 5.55 0.08 -15.79 16 13 N -0.55 -13.95 5.29 -10.96 -0.06 -14.01 16 14 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 15 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 17 N -0.90 -24.22 13.05 55.50 0.72 -23.49 16 18 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 C -0.23 -2.75 10.62 29.65 0.31 -2.43 16 23 S 0.20 1.75 22.22 -107.50 -2.39 -0.64 16 24 H 0.06 0.32 7.91 -51.93 -0.41 -0.09 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.32 7.91 -51.93 -0.41 -0.09 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.42 8.27 6.96 -40.82 -0.28 7.99 16 32 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 33 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.40 9.61 7.90 -40.82 -0.32 9.29 16 35 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.19 2.02 8.03 -52.48 -0.42 1.60 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -32.42 332.02 -6.74 -39.16 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -4.32 Total: 13.78 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -0.42 Total: 10.61 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.23 Total: -57.29 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: 0.17 Total: -26.43 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.39 Total: -0.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.42 -6.74 -39.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343516969.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.372 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds