Wall clock time and date at job start Tue Mar 31 2020 03:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47392 * 2 1 4 4 C 1.50703 * 109.46675 * 240.00480 * 2 1 3 5 5 S 1.70942 * 125.58980 * 54.40436 * 4 2 1 6 6 C 1.70768 * 91.13193 * 179.97438 * 5 4 2 7 7 N 1.28651 * 110.55906 * 0.34925 * 6 5 4 8 8 C 1.33567 * 115.76655 * 359.73410 * 7 6 5 9 9 C 1.47257 * 123.14344 * 180.02562 * 8 7 6 10 10 O 1.21630 * 120.00249 * 185.39670 * 9 8 7 11 11 N 1.34781 * 120.00065 * 5.39289 * 9 8 7 12 12 C 1.46503 * 120.00396 * 180.02562 * 11 9 8 13 13 C 1.50698 * 109.47306 * 180.02562 * 12 11 9 14 14 O 1.21293 * 119.99829 * 0.02562 * 13 12 11 15 15 N 1.34770 * 119.99978 * 179.97438 * 13 12 11 16 16 C 1.37101 * 120.00180 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99423 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00142 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99893 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99779 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47513 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47034 * 119.99974 * 20 18 16 23 23 H 1.48498 * 109.46917 * 239.99813 * 20 18 16 24 24 H 1.08999 * 109.47078 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47307 * 59.99210 * 1 2 3 26 26 H 1.09002 * 109.46255 * 299.99743 * 1 2 3 27 27 H 1.09001 * 109.47307 * 120.00790 * 2 1 3 28 28 H 1.09000 * 109.47072 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47047 * 300.00639 * 3 2 1 30 30 H 1.09006 * 109.46558 * 60.00571 * 3 2 1 31 31 H 1.07997 * 124.72457 * 180.08283 * 6 5 4 32 32 H 0.96998 * 119.99731 * 0.02562 * 11 9 8 33 33 H 1.08998 * 109.46639 * 299.99996 * 12 11 9 34 34 H 1.09003 * 109.46761 * 59.99974 * 12 11 9 35 35 H 0.97004 * 120.00129 * 0.02562 * 15 13 12 36 36 H 0.96994 * 119.99892 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 16 1.6009 -0.3351 -2.8416 6 6 2.6010 -1.5850 -3.4363 7 7 3.1779 -2.2023 -2.4661 8 6 2.8925 -1.7535 -1.2409 9 6 3.4620 -2.3395 -0.0158 10 8 3.0885 -1.9512 1.0746 11 7 4.3971 -3.3062 -0.1029 12 6 4.9633 -3.8897 1.1158 13 6 5.9791 -4.9394 0.7453 14 8 6.2079 -5.1765 -0.4221 15 7 6.6340 -5.6139 1.7109 16 6 7.5585 -6.5686 1.3738 17 1 7.7616 -6.7802 0.3344 18 6 8.2333 -7.2644 2.3694 19 7 7.9857 -7.0072 3.6340 20 14 9.4924 -8.5656 1.9100 21 1 9.5863 -8.6634 0.4312 22 1 10.8174 -8.1903 2.4658 23 1 9.0750 -9.8770 2.4678 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3632 0.5138 0.8901 27 1 1.8934 -0.5140 0.8899 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 2.7280 -1.8268 -4.4811 32 1 4.6952 -3.6157 -0.9725 33 1 5.4464 -3.1081 1.7022 34 1 4.1670 -4.3457 1.7041 35 1 6.4512 -5.4241 2.6444 36 1 8.4564 -7.4932 4.3290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356493447.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:14 Heat of formation + Delta-G solvation = -64.152136 kcal Electronic energy + Delta-G solvation = -21011.944437 eV Core-core repulsion = 17621.618534 eV Total energy + Delta-G solvation = -3390.325903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.75328 -40.41668 -39.41915 -36.87083 -36.21887 -35.27364 -33.40710 -31.10214 -29.48293 -28.07322 -27.02945 -25.98340 -23.57679 -22.43137 -21.42729 -20.94749 -20.06291 -19.07221 -18.16388 -17.47222 -16.95667 -16.81306 -16.55379 -16.22893 -16.00208 -15.68885 -15.22936 -14.97410 -14.91640 -14.66636 -13.99522 -13.98917 -13.60792 -13.57581 -13.10043 -13.05732 -12.93022 -12.47268 -12.44654 -12.24565 -12.20594 -12.11836 -11.60543 -10.81860 -10.72306 -10.60137 -10.41955 -10.35047 -10.11979 -9.88623 -8.53225 -6.03574 -0.49281 0.26954 0.62530 0.90976 1.33455 1.41541 1.55900 1.86650 2.01612 2.24379 2.30860 3.06162 3.13476 3.13773 3.59239 3.84487 4.04163 4.17587 4.18572 4.32188 4.36948 4.38966 4.57693 4.73322 4.85277 4.90882 4.94990 5.09133 5.20224 5.31803 5.36357 5.49207 5.89234 6.24054 6.45794 6.57714 7.00316 7.02465 7.40577 7.91873 8.63975 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.032014 B = 0.002950 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.394709 B = 9488.103572 C =10167.492970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.057 4.057 3 C -0.137 4.137 4 C -0.180 4.180 5 S 0.289 5.711 6 C -0.011 4.011 7 N -0.475 5.475 8 C -0.035 4.035 9 C 0.589 3.411 10 O -0.557 6.557 11 N -0.695 5.695 12 C 0.121 3.879 13 C 0.430 3.570 14 O -0.625 6.625 15 N -0.557 5.557 16 C -0.338 4.338 17 H 0.084 0.916 18 C -0.009 4.009 19 N -0.915 5.915 20 Si 0.998 3.002 21 H -0.271 1.271 22 H -0.270 1.270 23 H -0.270 1.270 24 H 0.047 0.953 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.238 0.762 32 H 0.415 0.585 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.400 0.600 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.659 16.952 -10.230 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.078 4.078 3 C -0.195 4.195 4 C -0.305 4.305 5 S 0.546 5.454 6 C -0.310 4.310 7 N -0.189 5.189 8 C -0.169 4.169 9 C 0.375 3.625 10 O -0.437 6.437 11 N -0.348 5.348 12 C -0.007 4.007 13 C 0.217 3.783 14 O -0.513 6.513 15 N -0.192 5.192 16 C -0.468 4.468 17 H 0.102 0.898 18 C -0.210 4.210 19 N -0.555 5.555 20 Si 0.821 3.179 21 H -0.196 1.196 22 H -0.195 1.195 23 H -0.195 1.195 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.254 0.746 32 H 0.254 0.746 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.234 0.766 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.909 17.190 -10.667 25.737 hybrid contribution 1.404 -1.508 0.879 2.240 sum -14.505 15.682 -9.788 23.497 Atomic orbital electron populations 1.21888 0.91964 1.02101 1.03685 1.20317 0.97360 0.96512 0.93609 1.21857 1.00628 0.93374 1.03643 1.26011 1.00602 0.99679 1.04225 1.82320 1.40323 1.30629 0.92113 1.28987 0.99433 0.98090 1.04501 1.66960 1.24342 1.29163 0.98432 1.20059 1.04713 1.00237 0.91882 1.17428 0.78612 0.78770 0.87677 1.90629 1.62156 1.62574 1.28377 1.45622 1.40351 1.38114 1.10689 1.20865 0.96267 0.95731 0.87801 1.20398 0.85874 0.86024 0.85963 1.90492 1.70008 1.70784 1.19984 1.41817 1.35360 1.33556 1.08483 1.19776 1.17296 1.15119 0.94572 0.89760 1.26136 1.00066 1.00359 0.94455 1.69681 1.43152 1.42740 0.99902 0.84804 0.77389 0.77320 0.78411 1.19564 1.19469 1.19470 0.93365 0.90865 0.90242 0.87763 0.93874 0.90876 0.90255 0.74610 0.74612 0.88210 0.88265 0.76592 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.04 71.98 0.65 -1.51 16 2 C -0.06 -1.21 3.12 -11.54 -0.04 -1.25 16 3 C -0.14 -2.27 9.16 71.98 0.66 -1.61 16 4 C -0.18 -4.15 5.03 24.99 0.13 -4.02 16 5 S 0.29 4.01 22.43 -56.49 -1.27 2.74 16 6 C -0.01 -0.20 12.17 130.71 1.59 1.39 16 7 N -0.47 -13.35 10.13 -193.03 -1.96 -15.31 16 8 C -0.04 -1.06 6.70 40.55 0.27 -0.79 16 9 C 0.59 21.22 7.79 86.61 0.67 21.89 16 10 O -0.56 -21.07 13.86 -4.13 -0.06 -21.13 16 11 N -0.70 -26.77 5.52 -470.25 -2.60 -29.37 16 12 C 0.12 4.75 6.15 85.63 0.53 5.28 16 13 C 0.43 21.05 7.85 87.66 0.69 21.74 16 14 O -0.62 -34.61 15.24 -3.07 -0.05 -34.66 16 15 N -0.56 -28.88 5.29 -306.99 -1.62 -30.50 16 16 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 17 H 0.08 5.05 7.16 -2.91 -0.02 5.03 16 18 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 19 N -0.91 -49.15 13.05 21.66 0.28 -48.87 16 20 Si 1.00 42.49 29.55 68.60 2.03 44.52 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.07 0.83 7.83 -2.39 -0.02 0.81 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.10 2.94 4.94 -2.39 -0.01 2.93 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.24 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.42 16.95 6.97 -92.71 -0.65 16.30 16 33 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 34 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 35 H 0.40 19.74 7.90 -92.71 -0.73 19.01 16 36 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -70.82 326.76 0.96 -69.87 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -0.24 Total: 39.96 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: 6.43 Total: 22.75 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -5.89 Total: -124.05 kcal Atomic # 8 Polarization: -55.68 SS G_CDS: -0.10 Total: -55.79 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.27 Total: 2.74 kcal Total: -70.82 0.96 -69.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356493447.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.714 kcal (2) G-P(sol) polarization free energy of solvation -70.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds