Wall clock time and date at job start Tue Mar 31 2020 03:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35897 * 116.99874 * 2 1 4 4 C 1.38750 * 120.06125 * 0.30666 * 3 2 1 5 5 C 1.38116 * 119.94855 * 180.24446 * 4 3 2 6 6 C 1.38288 * 120.05643 * 359.47258 * 5 4 3 7 7 C 1.38243 * 120.11038 * 0.22828 * 6 5 4 8 8 S 1.76198 * 119.97374 * 180.02562 * 7 6 5 9 9 O 1.42099 * 103.00225 * 203.85418 * 8 7 6 10 10 C 1.81400 * 102.99903 * 90.00366 * 8 7 6 11 11 C 1.50697 * 109.47507 * 180.02562 * 10 8 7 12 12 O 1.21290 * 119.99495 * 359.97438 * 11 10 8 13 13 N 1.34771 * 120.00320 * 180.02562 * 11 10 8 14 14 C 1.46503 * 119.99843 * 359.97438 * 13 11 10 15 15 C 1.37101 * 120.00149 * 179.97438 * 13 11 10 16 16 H 1.08001 * 119.99729 * 22.40151 * 15 13 11 17 17 C 1.38952 * 119.99873 * 202.40067 * 15 13 11 18 18 N 1.31407 * 120.00309 * 11.60531 * 17 15 13 19 19 Si 1.86802 * 119.99577 * 191.60496 * 17 15 13 20 20 H 1.48495 * 109.47384 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46938 * 120.00530 * 19 17 15 22 22 H 1.48503 * 109.46893 * 239.99629 * 19 17 15 23 23 C 1.38170 * 120.05504 * 0.04773 * 7 6 5 24 24 H 1.09001 * 109.47242 * 59.99439 * 1 2 3 25 25 H 1.08996 * 109.47210 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47295 * 299.99519 * 1 2 3 27 27 H 1.08002 * 120.02475 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.97427 * 179.73946 * 5 4 3 29 29 H 1.07994 * 119.94720 * 180.25335 * 6 5 4 30 30 H 1.09007 * 109.47170 * 300.00446 * 10 8 7 31 31 H 1.09002 * 109.47462 * 59.99849 * 10 8 7 32 32 H 1.08995 * 109.46912 * 92.16747 * 14 13 11 33 33 H 1.09003 * 109.46903 * 212.16311 * 14 13 11 34 34 H 1.08997 * 109.47342 * 332.16086 * 14 13 11 35 35 H 0.96998 * 120.00609 * 179.97438 * 18 17 15 36 36 H 1.07996 * 120.02686 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0064 5 6 1.9208 3.6047 0.0013 6 6 3.3019 3.6758 0.0008 7 6 4.0560 2.5171 0.0007 8 16 5.8154 2.6119 0.0007 9 8 6.2028 1.3647 -0.5594 10 6 6.2228 2.6335 1.7682 11 6 7.7180 2.7146 1.9382 12 8 8.4379 2.7536 0.9629 13 7 8.2552 2.7429 3.1739 14 6 7.3856 2.6953 4.3520 15 6 9.6155 2.8162 3.3285 16 1 10.2294 3.2067 2.5304 17 6 10.2042 2.3880 4.5121 18 7 9.4994 1.7077 5.3880 19 14 11.9977 2.7796 4.8580 20 1 12.5638 3.5515 3.7227 21 1 12.0975 3.5846 6.1020 22 1 12.7573 1.5145 5.0249 23 6 3.4311 1.2848 0.0000 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2128 2.3204 0.0110 28 1 1.3339 4.5114 0.0021 29 1 3.7922 4.6380 0.0009 30 1 5.7565 3.4996 2.2380 31 1 5.8523 1.7222 2.2377 32 1 7.2564 1.6598 4.6666 33 1 7.8390 3.2672 5.1616 34 1 6.4144 3.1237 4.1042 35 1 9.9105 1.4085 6.2140 36 1 4.0206 0.3800 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424627936.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:44 Heat of formation + Delta-G solvation = -66.913487 kcal Electronic energy + Delta-G solvation = -21169.218809 eV Core-core repulsion = 17746.480414 eV Total energy + Delta-G solvation = -3422.738395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.17888 -38.38850 -37.46618 -35.35829 -34.74072 -31.75714 -31.26890 -30.29501 -29.16325 -27.51116 -26.15269 -24.22029 -22.92820 -22.39866 -19.42384 -18.66670 -16.93781 -16.82214 -16.41772 -16.18081 -16.06823 -15.94919 -14.95377 -14.90413 -14.58422 -14.21694 -14.07565 -13.69013 -13.63828 -12.84074 -12.74051 -12.49449 -12.25453 -11.99013 -11.74992 -11.48705 -11.36129 -11.26019 -11.24046 -11.06268 -10.89979 -10.33871 -10.30445 -9.91556 -9.30829 -9.06540 -8.61118 -8.37853 -8.04594 -7.73132 -6.34100 -3.91191 0.83642 1.31304 2.07817 2.96563 3.14052 3.18918 3.25172 3.32368 3.61774 3.79016 4.12459 4.26933 4.58766 4.76094 4.84774 4.86357 4.90061 5.09124 5.10078 5.18663 5.31327 5.41935 5.63465 5.71170 5.82287 6.04040 6.10756 6.19004 6.26612 6.33516 6.51185 6.84932 7.20341 7.22989 7.54940 8.05940 8.41733 9.11888 9.37063 9.89454 10.69590 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.028732 B = 0.003395 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.275675 B = 8245.158988 C = 8528.981066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.108 3.892 4 C -0.182 4.182 5 C -0.100 4.100 6 C -0.081 4.081 7 C -0.432 4.432 8 S 1.383 4.617 9 O -0.836 6.836 10 C -0.471 4.471 11 C 0.467 3.533 12 O -0.591 6.591 13 N -0.436 5.436 14 C 0.111 3.889 15 C -0.307 4.307 16 H 0.103 0.897 17 C 0.029 3.971 18 N -0.882 5.882 19 Si 0.929 3.071 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.085 4.085 24 H 0.054 0.946 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.029 0.971 35 H 0.268 0.732 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.895 5.906 -6.337 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.062 3.938 4 C -0.201 4.201 5 C -0.119 4.119 6 C -0.101 4.101 7 C -0.526 4.526 8 S 1.576 4.424 9 O -0.832 6.832 10 C -0.609 4.609 11 C 0.254 3.746 12 O -0.478 6.478 13 N -0.154 5.154 14 C -0.033 4.033 15 C -0.435 4.435 16 H 0.121 0.879 17 C -0.174 4.174 18 N -0.521 5.521 19 Si 0.756 3.244 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.104 4.104 24 H 0.073 0.927 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.157 0.843 30 H 0.146 0.854 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.831 5.650 -7.344 20.094 hybrid contribution -0.612 -1.756 1.758 2.559 sum -18.443 3.894 -5.586 19.659 Atomic orbital electron populations 1.23046 0.78604 1.03951 1.01170 1.86115 1.21216 1.26954 1.88885 1.19176 0.92489 0.84286 0.97864 1.21352 0.99871 0.92631 1.06206 1.21063 0.94967 0.96897 0.98990 1.20803 0.93384 0.97372 0.98495 1.28472 1.21756 0.95809 1.06555 1.70106 0.77474 1.09445 0.85420 1.93059 1.76052 1.45913 1.68141 1.27974 1.02500 1.08042 1.22400 1.18986 0.86705 0.84513 0.84433 1.90555 1.62025 1.57047 1.38136 1.43533 1.06735 1.61395 1.03695 1.21540 0.90734 1.02100 0.88908 1.19789 0.81489 1.40076 1.02186 0.87896 1.25396 1.00281 0.95285 0.96416 1.70014 1.37166 1.34780 1.10167 0.85815 0.81889 0.78301 0.78432 1.19036 1.20631 1.20729 1.20525 0.91473 0.98570 0.99873 0.92740 0.88257 0.92705 0.85484 0.85296 0.84255 0.85386 0.87948 0.92466 0.91091 0.95254 0.92227 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -4.17 10.50 -19.42 -0.20 -4.37 16 3 C 0.11 1.47 6.69 -39.22 -0.26 1.21 16 4 C -0.18 -1.94 9.04 -39.44 -0.36 -2.30 16 5 C -0.10 -0.96 10.04 -39.61 -0.40 -1.36 16 6 C -0.08 -0.84 9.75 -39.56 -0.39 -1.23 16 7 C -0.43 -6.01 5.61 -39.60 -0.22 -6.23 16 8 S 1.38 22.27 12.68 -107.50 -1.36 20.91 16 9 O -0.84 -18.83 16.90 -35.23 -0.60 -19.42 16 10 C -0.47 -8.50 4.89 36.00 0.18 -8.32 16 11 C 0.47 11.38 7.65 -10.99 -0.08 11.30 16 12 O -0.59 -16.14 15.56 5.55 0.09 -16.06 16 13 N -0.44 -11.30 3.02 -122.19 -0.37 -11.67 16 14 C 0.11 2.50 8.52 59.85 0.51 3.01 16 15 C -0.31 -8.62 9.29 -14.93 -0.14 -8.76 16 16 H 0.10 2.98 7.41 -52.49 -0.39 2.59 16 17 C 0.03 0.79 5.11 -17.47 -0.09 0.70 16 18 N -0.88 -23.81 10.62 55.50 0.59 -23.22 16 19 Si 0.93 20.81 29.57 -169.99 -5.03 15.78 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.08 -1.34 9.38 -39.43 -0.37 -1.71 16 24 H 0.05 0.36 7.68 -51.93 -0.40 -0.04 16 25 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 27 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 28 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 29 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 30 H 0.13 1.77 7.41 -51.92 -0.38 1.39 16 31 H 0.10 1.91 8.11 -51.92 -0.42 1.49 16 32 H 0.06 1.37 7.54 -51.93 -0.39 0.98 16 33 H 0.07 1.65 7.06 -51.93 -0.37 1.28 16 34 H 0.03 0.53 6.36 -51.93 -0.33 0.20 16 35 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 36 H 0.13 2.40 7.45 -52.49 -0.39 2.01 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -37.87 321.45 -6.87 -44.73 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -4.20 Total: 0.94 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.63 Total: -12.48 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.22 Total: -34.89 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -0.71 Total: -39.85 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 16 Polarization: 22.27 SS G_CDS: -1.36 Total: 20.91 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -37.87 -6.87 -44.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424627936.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.179 kcal (2) G-P(sol) polarization free energy of solvation -37.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds