Wall clock time and date at job start Tue Mar 31 2020 03:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35897 * 116.99874 * 2 1 4 4 C 1.38750 * 120.06125 * 0.30666 * 3 2 1 5 5 C 1.38116 * 119.94855 * 180.24446 * 4 3 2 6 6 C 1.38288 * 120.05643 * 359.47258 * 5 4 3 7 7 C 1.38243 * 120.11038 * 0.22828 * 6 5 4 8 8 S 1.76198 * 119.97374 * 180.02562 * 7 6 5 9 9 O 1.42099 * 103.00225 * 203.85418 * 8 7 6 10 10 C 1.81400 * 102.99903 * 90.00366 * 8 7 6 11 11 C 1.50697 * 109.47507 * 180.02562 * 10 8 7 12 12 O 1.21290 * 119.99495 * 359.97438 * 11 10 8 13 13 N 1.34771 * 120.00320 * 180.02562 * 11 10 8 14 14 C 1.46503 * 119.99843 * 359.97438 * 13 11 10 15 15 C 1.37101 * 120.00149 * 179.97438 * 13 11 10 16 16 H 1.08001 * 119.99729 * 22.40151 * 15 13 11 17 17 C 1.38952 * 119.99873 * 202.40067 * 15 13 11 18 18 N 1.31407 * 120.00309 * 11.60531 * 17 15 13 19 19 Si 1.86802 * 119.99577 * 191.60496 * 17 15 13 20 20 H 1.48495 * 109.47384 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46938 * 120.00530 * 19 17 15 22 22 H 1.48503 * 109.46893 * 239.99629 * 19 17 15 23 23 C 1.38170 * 120.05504 * 0.04773 * 7 6 5 24 24 H 1.09001 * 109.47242 * 59.99439 * 1 2 3 25 25 H 1.08996 * 109.47210 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47295 * 299.99519 * 1 2 3 27 27 H 1.08002 * 120.02475 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.97427 * 179.73946 * 5 4 3 29 29 H 1.07994 * 119.94720 * 180.25335 * 6 5 4 30 30 H 1.09007 * 109.47170 * 300.00446 * 10 8 7 31 31 H 1.09002 * 109.47462 * 59.99849 * 10 8 7 32 32 H 1.08995 * 109.46912 * 92.16747 * 14 13 11 33 33 H 1.09003 * 109.46903 * 212.16311 * 14 13 11 34 34 H 1.08997 * 109.47342 * 332.16086 * 14 13 11 35 35 H 0.96998 * 120.00609 * 179.97438 * 18 17 15 36 36 H 1.07996 * 120.02686 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0064 5 6 1.9208 3.6047 0.0013 6 6 3.3019 3.6758 0.0008 7 6 4.0560 2.5171 0.0007 8 16 5.8154 2.6119 0.0007 9 8 6.2028 1.3647 -0.5594 10 6 6.2228 2.6335 1.7682 11 6 7.7180 2.7146 1.9382 12 8 8.4379 2.7536 0.9629 13 7 8.2552 2.7429 3.1739 14 6 7.3856 2.6953 4.3520 15 6 9.6155 2.8162 3.3285 16 1 10.2294 3.2067 2.5304 17 6 10.2042 2.3880 4.5121 18 7 9.4994 1.7077 5.3880 19 14 11.9977 2.7796 4.8580 20 1 12.5638 3.5515 3.7227 21 1 12.0975 3.5846 6.1020 22 1 12.7573 1.5145 5.0249 23 6 3.4311 1.2848 0.0000 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2128 2.3204 0.0110 28 1 1.3339 4.5114 0.0021 29 1 3.7922 4.6380 0.0009 30 1 5.7565 3.4996 2.2380 31 1 5.8523 1.7222 2.2377 32 1 7.2564 1.6598 4.6666 33 1 7.8390 3.2672 5.1616 34 1 6.4144 3.1237 4.1042 35 1 9.9105 1.4085 6.2140 36 1 4.0206 0.3800 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424627936.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:43 Heat of formation + Delta-G solvation = -95.702193 kcal Electronic energy + Delta-G solvation = -21170.467181 eV Core-core repulsion = 17746.480414 eV Total energy + Delta-G solvation = -3423.986767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.05746 -40.32650 -38.34454 -36.93988 -36.72884 -33.76980 -32.19640 -31.21211 -30.79421 -28.19144 -28.04118 -26.18103 -23.87805 -23.29592 -21.18869 -19.72913 -18.95108 -18.22733 -17.82738 -17.29137 -16.95452 -16.78041 -16.70542 -16.44193 -16.23132 -15.79639 -15.32722 -15.03185 -14.54969 -14.34795 -14.16068 -13.68893 -13.63537 -13.31906 -13.24202 -13.11702 -12.81838 -12.73131 -12.67485 -12.33123 -12.12074 -12.10853 -12.00097 -11.31292 -11.05570 -10.59441 -10.24581 -9.76758 -9.45363 -9.24168 -8.36551 -6.02990 -0.17744 0.41645 0.84259 1.34995 1.40996 1.56076 1.80685 1.92150 2.27144 2.33928 2.65743 2.91547 3.06939 3.11792 3.79159 3.91345 4.01034 4.20899 4.24963 4.33960 4.35878 4.44564 4.49567 4.57490 4.66170 4.71168 4.87214 4.99953 5.21613 5.33839 5.34470 5.38140 5.43362 5.74258 6.02810 6.39387 6.39788 7.08926 7.39830 7.92110 8.65608 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.028732 B = 0.003395 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.275675 B = 8245.158988 C = 8528.981066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.351 6.351 3 C 0.091 3.909 4 C -0.172 4.172 5 C -0.089 4.089 6 C -0.070 4.070 7 C -0.440 4.440 8 S 1.429 4.571 9 O -0.913 6.913 10 C -0.466 4.466 11 C 0.456 3.544 12 O -0.629 6.629 13 N -0.455 5.455 14 C 0.119 3.881 15 C -0.346 4.346 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.901 5.901 19 Si 0.995 3.005 20 H -0.268 1.268 21 H -0.262 1.262 22 H -0.280 1.280 23 C -0.128 4.128 24 H 0.071 0.929 25 H 0.113 0.887 26 H 0.070 0.930 27 H 0.161 0.839 28 H 0.177 0.823 29 H 0.186 0.814 30 H 0.180 0.820 31 H 0.095 0.905 32 H 0.035 0.965 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.273 0.727 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.749 8.629 -5.754 24.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.265 6.265 3 C 0.045 3.955 4 C -0.190 4.190 5 C -0.107 4.107 6 C -0.090 4.090 7 C -0.537 4.537 8 S 1.626 4.374 9 O -0.909 6.909 10 C -0.603 4.603 11 C 0.245 3.755 12 O -0.518 6.518 13 N -0.173 5.173 14 C -0.024 4.024 15 C -0.474 4.474 16 H 0.098 0.902 17 C -0.208 4.208 18 N -0.539 5.539 19 Si 0.818 3.182 20 H -0.192 1.192 21 H -0.186 1.186 22 H -0.206 1.206 23 C -0.148 4.148 24 H 0.089 0.911 25 H 0.131 0.869 26 H 0.089 0.911 27 H 0.178 0.822 28 H 0.195 0.805 29 H 0.204 0.796 30 H 0.197 0.803 31 H 0.113 0.887 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.677 8.366 -6.737 23.301 hybrid contribution 0.044 -2.604 1.533 3.022 sum -20.633 5.762 -5.204 22.046 Atomic orbital electron populations 1.23380 0.76021 1.05577 1.02679 1.86073 1.24007 1.27418 1.89028 1.19292 0.91902 0.85713 0.98545 1.21816 1.01484 0.91815 1.03907 1.21661 0.94779 0.98093 0.96203 1.21403 0.94096 0.97613 0.95849 1.27911 1.19583 0.96791 1.09412 1.69113 0.78399 1.06879 0.83057 1.92942 1.79222 1.48644 1.70066 1.27950 0.97948 1.09871 1.24528 1.19943 0.89285 0.82798 0.83505 1.90520 1.63906 1.58133 1.39279 1.43826 1.06609 1.61775 1.05114 1.21501 0.92265 1.00963 0.87651 1.19813 0.82962 1.42058 1.02567 0.90167 1.26209 1.04407 0.94531 0.95663 1.70102 1.38739 1.34672 1.10414 0.84860 0.76603 0.78115 0.78671 1.19222 1.18643 1.20635 1.20396 0.92889 0.97905 1.03610 0.91055 0.86872 0.91120 0.82155 0.80548 0.79647 0.80291 0.88666 0.94591 0.92240 0.90428 0.91699 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.35 -9.16 10.50 -92.39 -0.97 -10.13 16 3 C 0.09 2.43 6.69 22.51 0.15 2.58 16 4 C -0.17 -2.97 9.04 22.36 0.20 -2.77 16 5 C -0.09 -1.19 10.04 22.25 0.22 -0.96 16 6 C -0.07 -1.15 9.75 22.28 0.22 -0.93 16 7 C -0.44 -11.75 5.61 22.25 0.12 -11.62 16 8 S 1.43 46.61 12.68 -56.49 -0.72 45.90 16 9 O -0.91 -43.92 16.90 -148.98 -2.52 -46.44 16 10 C -0.47 -16.55 4.89 71.23 0.35 -16.20 16 11 C 0.46 22.68 7.65 87.66 0.67 23.35 16 12 O -0.63 -35.78 15.56 -3.06 -0.05 -35.83 16 13 N -0.46 -24.06 3.02 -658.90 -1.99 -26.05 16 14 C 0.12 5.34 8.52 127.77 1.09 6.43 16 15 C -0.35 -20.01 9.29 84.04 0.78 -19.23 16 16 H 0.08 4.88 7.41 -2.91 -0.02 4.86 16 17 C -0.01 -0.36 5.11 84.93 0.43 0.07 16 18 N -0.90 -49.06 10.62 21.66 0.23 -48.83 16 19 Si 0.99 43.00 29.57 68.60 2.03 45.03 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 C -0.13 -4.18 9.38 22.37 0.21 -3.97 16 24 H 0.07 0.72 7.68 -2.39 -0.02 0.70 16 25 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 0.73 7.65 -2.39 -0.02 0.71 16 27 H 0.16 1.65 6.30 -2.91 -0.02 1.63 16 28 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 29 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 30 H 0.18 4.34 7.41 -2.39 -0.02 4.33 16 31 H 0.09 3.58 8.11 -2.39 -0.02 3.56 16 32 H 0.04 1.73 7.54 -2.39 -0.02 1.72 16 33 H 0.06 2.76 7.06 -2.39 -0.02 2.74 16 34 H 0.08 2.64 6.36 -2.39 -0.02 2.62 16 35 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 36 H 0.09 3.65 7.45 -2.91 -0.02 3.63 16 Total: -1.00 -90.10 321.45 2.68 -87.42 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.10 Total: 10.82 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 5.56 Total: -21.90 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -1.76 Total: -74.88 kcal Atomic # 8 Polarization: -88.86 SS G_CDS: -3.53 Total: -92.39 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 46.61 SS G_CDS: -0.72 Total: 45.90 kcal Total: -90.10 2.68 -87.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424627936.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.278 kcal (2) G-P(sol) polarization free energy of solvation -90.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds