Wall clock time and date at job start Tue Mar 31 2020 03:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 O 1.42105 * 108.57942 * 2 1 4 4 O 1.42097 * 108.57959 * 131.02529 * 2 1 3 5 5 C 1.81398 * 101.92304 * 245.51127 * 2 1 3 6 6 C 1.53004 * 109.47358 * 179.97438 * 5 2 1 7 7 H 1.08992 * 109.47416 * 305.00439 * 6 5 2 8 8 C 1.50695 * 109.47052 * 184.99792 * 6 5 2 9 9 O 1.21294 * 120.00372 * 239.99805 * 8 6 5 10 10 N 1.34783 * 119.99914 * 60.00683 * 8 6 5 11 11 C 1.37098 * 119.99686 * 179.97438 * 10 8 6 12 12 H 1.07992 * 120.00561 * 0.02562 * 11 10 8 13 13 C 1.38953 * 119.99326 * 179.97438 * 11 10 8 14 14 N 1.31411 * 120.00487 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99626 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46862 * 60.00495 * 15 13 11 17 17 H 1.48506 * 109.47147 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47355 * 300.00387 * 15 13 11 19 19 C 1.50706 * 109.46531 * 65.00205 * 6 5 2 20 20 C 1.38234 * 119.99979 * 59.72739 * 19 6 5 21 21 C 1.38239 * 119.99829 * 179.80438 * 20 19 6 22 22 C 1.38231 * 119.99864 * 0.40271 * 21 20 19 23 23 C 1.38242 * 120.00287 * 359.85162 * 22 21 20 24 24 C 1.38233 * 119.99741 * 239.99689 * 19 6 5 25 25 H 1.09003 * 109.47583 * 54.49036 * 1 2 3 26 26 H 1.09003 * 109.47643 * 174.48586 * 1 2 3 27 27 H 1.09003 * 109.47254 * 294.48846 * 1 2 3 28 28 H 1.08998 * 109.47096 * 300.00087 * 5 2 1 29 29 H 1.09006 * 109.47169 * 59.99793 * 5 2 1 30 30 H 0.96996 * 119.99655 * 359.97438 * 10 8 6 31 31 H 0.96994 * 119.99998 * 179.97438 * 14 13 11 32 32 H 1.07997 * 120.00180 * 359.97438 * 20 19 6 33 33 H 1.07994 * 119.99898 * 180.22787 * 21 20 19 34 34 H 1.07996 * 120.00401 * 179.83302 * 22 21 20 35 35 H 1.07998 * 119.99964 * 179.97438 * 23 22 21 36 36 H 1.08005 * 120.00135 * 359.97438 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 1.0161 5 6 2.1887 -0.7357 -1.6152 6 6 3.7054 -0.8184 -1.7984 7 1 4.1427 0.1701 -1.6592 8 6 4.0174 -1.3148 -3.1867 9 8 4.6467 -2.3407 -3.3369 10 7 3.5971 -0.6185 -4.2615 11 6 3.8814 -1.0698 -5.5245 12 1 4.4416 -1.9833 -5.6582 13 6 3.4477 -0.3523 -6.6325 14 7 2.7655 0.7591 -6.4699 15 14 3.8343 -0.9675 -8.3535 16 1 3.2388 -2.3146 -8.5429 17 1 3.2654 -0.0291 -9.3541 18 1 5.3064 -1.0475 -8.5315 19 6 4.2828 -1.7707 -0.7830 20 6 3.8718 -3.0903 -0.7610 21 6 4.4043 -3.9648 0.1678 22 6 5.3417 -3.5175 1.0800 23 6 5.7488 -2.1965 1.0615 24 6 5.2192 -1.3231 0.1301 25 1 -0.3634 0.5969 -0.8365 26 1 -0.3634 -1.0229 -0.0987 27 1 -0.3634 0.4260 0.9352 28 1 1.7610 -1.7370 -1.6664 29 1 1.7609 -0.1171 -2.4043 30 1 3.0936 0.2018 -4.1414 31 1 2.4631 1.2601 -7.2434 32 1 3.1367 -3.4389 -1.4713 33 1 4.0860 -4.9966 0.1826 34 1 5.7558 -4.1999 1.8074 35 1 6.4808 -1.8471 1.7745 36 1 5.5373 -0.2911 0.1155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590444645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:30 Heat of formation + Delta-G solvation = -78.919191 kcal Electronic energy + Delta-G solvation = -22219.981924 eV Core-core repulsion = 18796.722922 eV Total energy + Delta-G solvation = -3423.259002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.55124 -37.82184 -36.84031 -35.89759 -34.20832 -33.75615 -31.29617 -30.52722 -29.85065 -29.03612 -25.66861 -24.21188 -22.23912 -21.34577 -19.10762 -18.75970 -18.06894 -16.80788 -16.55519 -16.10208 -15.91999 -15.64861 -14.99592 -14.65544 -14.40321 -13.96618 -13.62088 -13.39198 -13.34475 -13.22696 -12.97282 -12.73204 -12.41997 -12.00837 -11.88471 -11.85249 -11.61092 -11.56647 -11.10969 -11.04260 -10.70517 -10.60159 -10.59894 -10.50061 -10.28091 -9.59843 -8.60858 -8.37673 -8.25904 -8.07563 -6.51581 -3.92535 0.01926 1.73426 1.87523 2.77900 3.12846 3.20734 3.24834 3.54727 3.83058 4.04404 4.06799 4.21035 4.64232 4.69736 4.78718 4.90853 4.96906 5.12912 5.23977 5.31561 5.34719 5.47728 5.53265 5.62651 5.78984 5.89221 6.06043 6.14902 6.40982 6.45378 6.82687 6.88831 7.01689 7.41519 7.46203 7.94281 8.48531 9.06734 9.41357 9.91986 10.65625 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.015828 B = 0.005449 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.544563 B = 5137.006208 C = 6388.138842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 2.413 3.587 3 O -0.940 6.940 4 O -0.923 6.923 5 C -0.599 4.599 6 C -0.046 4.046 7 H 0.103 0.897 8 C 0.453 3.547 9 O -0.576 6.576 10 N -0.556 5.556 11 C -0.302 4.302 12 H 0.104 0.896 13 C 0.025 3.975 14 N -0.899 5.899 15 Si 0.932 3.068 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.273 1.273 19 C -0.071 4.071 20 C -0.068 4.068 21 C -0.124 4.124 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.105 4.105 25 H 0.129 0.871 26 H 0.128 0.872 27 H 0.126 0.874 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.393 0.607 31 H 0.274 0.726 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.778 -1.803 12.801 13.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.595 3.405 3 O -0.937 6.937 4 O -0.920 6.920 5 C -0.728 4.728 6 C -0.069 4.069 7 H 0.122 0.878 8 C 0.237 3.763 9 O -0.460 6.460 10 N -0.192 5.192 11 C -0.432 4.432 12 H 0.122 0.878 13 C -0.177 4.177 14 N -0.539 5.539 15 Si 0.759 3.241 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.072 4.072 20 C -0.087 4.087 21 C -0.142 4.142 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.123 4.123 25 H 0.147 0.853 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.226 0.774 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.888 -2.045 13.200 13.911 hybrid contribution -0.841 0.056 -1.585 1.795 sum -4.729 -1.990 11.615 12.697 Atomic orbital electron populations 1.30329 1.27672 1.11537 1.11532 1.08157 0.78132 0.76086 0.78160 1.93593 1.78941 1.34585 1.86613 1.93630 1.78311 1.66448 1.53638 1.30438 1.04484 1.14676 1.23220 1.19901 0.90685 1.00298 0.95997 0.87849 1.19254 0.85680 0.86894 0.84513 1.90562 1.44243 1.25657 1.85588 1.41848 1.48628 1.23715 1.04973 1.19692 1.33372 1.08984 0.81137 0.87789 1.25280 0.96524 0.95612 1.00317 1.69591 1.36971 1.15239 1.32137 0.85901 0.78972 0.78414 0.80853 1.19869 1.20891 1.19810 1.19294 0.98047 0.94793 0.95017 1.20805 0.99020 0.92497 0.96335 1.20997 0.97930 0.99187 0.96057 1.21016 0.97939 0.95767 0.98958 1.20919 1.00335 0.93813 0.98907 1.20951 0.96450 0.99609 0.95262 0.85259 0.85365 0.85545 0.84432 0.84114 0.77383 0.91619 0.86382 0.86548 0.86718 0.86499 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -5.30 10.62 101.05 1.07 -4.23 16 2 S 2.41 29.53 5.22 -107.50 -0.56 28.97 16 3 O -0.94 -14.56 18.10 -57.83 -1.05 -15.61 16 4 O -0.92 -13.73 16.42 -57.83 -0.95 -14.68 16 5 C -0.60 -8.12 5.10 37.16 0.19 -7.93 16 6 C -0.05 -0.82 2.38 -92.92 -0.22 -1.04 16 7 H 0.10 1.72 7.88 -51.93 -0.41 1.31 16 8 C 0.45 10.31 6.98 -10.98 -0.08 10.24 16 9 O -0.58 -15.12 14.70 5.55 0.08 -15.04 16 10 N -0.56 -13.47 5.15 -10.96 -0.06 -13.52 16 11 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 12 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 13 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 14 N -0.90 -23.48 13.05 55.50 0.72 -22.76 16 15 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 C -0.07 -1.27 2.73 -104.62 -0.29 -1.55 16 20 C -0.07 -1.19 7.88 -39.58 -0.31 -1.51 16 21 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 22 C -0.12 -1.73 10.05 -39.58 -0.40 -2.12 16 23 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 24 C -0.10 -1.75 9.40 -39.58 -0.37 -2.12 16 25 H 0.13 0.86 8.14 -51.92 -0.42 0.44 16 26 H 0.13 0.79 8.14 -51.92 -0.42 0.37 16 27 H 0.13 0.87 8.14 -51.92 -0.42 0.45 16 28 H 0.14 1.62 7.21 -51.93 -0.37 1.24 16 29 H 0.14 1.72 7.43 -51.92 -0.39 1.33 16 30 H 0.39 8.98 7.26 -40.82 -0.30 8.68 16 31 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.12 2.01 7.49 -52.49 -0.39 1.61 16 33 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.12 1.76 7.95 -52.48 -0.42 1.34 16 LS Contribution 323.18 15.07 4.87 4.87 Total: -1.00 -35.22 323.18 -7.72 -42.94 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -4.32 Total: 11.95 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -1.44 Total: -22.52 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.67 Total: -36.28 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -1.91 Total: -45.32 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 29.53 SS G_CDS: -0.56 Total: 28.97 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.22 -7.72 -42.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590444645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.978 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds