Wall clock time and date at job start Tue Mar 31 2020 03:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99948 * 2 1 4 4 H 1.48501 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47283 * 300.00191 * 3 2 1 6 6 H 1.48506 * 109.47463 * 60.00180 * 3 2 1 7 7 C 1.37875 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00257 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99934 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.64436 * 298.30511 * 9 7 2 11 11 C 1.54592 * 110.72349 * 61.45217 * 9 7 2 12 12 C 1.53993 * 105.14068 * 140.31378 * 11 9 7 13 13 N 1.47907 * 107.05581 * 1.22952 * 12 11 9 14 14 C 1.39149 * 110.99605 * 214.15223 * 13 12 11 15 15 N 1.32363 * 119.72025 * 239.84812 * 14 13 12 16 16 C 1.31973 * 121.64814 * 180.02562 * 15 14 13 17 17 C 1.38024 * 120.90230 * 359.74267 * 16 15 14 18 18 N 1.48007 * 120.33201 * 180.28671 * 17 16 15 19 19 O 1.21803 * 119.99971 * 180.24812 * 18 17 16 20 20 O 1.21797 * 119.99865 * 0.24516 * 18 17 16 21 21 C 1.38864 * 119.34345 * 0.53630 * 17 16 15 22 22 C 1.38489 * 118.48118 * 359.47555 * 21 17 16 23 23 F 1.35103 * 120.46879 * 180.23337 * 22 21 17 24 24 C 1.48538 * 105.81836 * 334.66573 * 13 12 11 25 25 H 0.97007 * 119.99545 * 359.97438 * 1 2 3 26 26 H 0.96697 * 113.99898 * 61.69521 * 10 9 7 27 27 H 1.08999 * 110.31024 * 21.40066 * 11 9 7 28 28 H 1.09006 * 110.39588 * 259.27634 * 11 9 7 29 29 H 1.08995 * 109.92194 * 241.87206 * 12 11 9 30 30 H 1.09004 * 109.91964 * 120.57893 * 12 11 9 31 31 H 1.08009 * 119.55011 * 180.02562 * 16 15 14 32 32 H 1.08002 * 120.76189 * 179.75771 * 21 17 16 33 33 H 1.08992 * 110.66406 * 157.64598 * 24 13 12 34 34 H 1.09001 * 110.66566 * 280.77590 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4504 -2.6187 1.1771 11 6 0.3786 -2.6271 -1.2703 12 6 0.5062 -4.1006 -1.6992 13 7 1.3764 -4.7676 -0.7065 14 6 2.1546 -5.7522 -1.3073 15 7 2.0486 -7.0088 -0.9051 16 6 2.7683 -7.9727 -1.4479 17 6 3.6607 -7.7036 -2.4659 18 7 4.4570 -8.7953 -3.0698 19 8 5.2461 -8.5504 -3.9648 20 8 4.3233 -9.9386 -2.6718 21 6 3.8079 -6.3977 -2.9144 22 6 3.0395 -5.4069 -2.3262 23 9 3.1469 -4.1236 -2.7347 24 6 2.2269 -3.6956 -0.1286 25 1 -0.4850 0.8401 0.0004 26 1 -0.2277 -1.9347 1.2628 27 1 0.7543 -1.9708 -2.0553 28 1 -0.6603 -2.3878 -1.0431 29 1 0.9579 -4.1614 -2.6893 30 1 -0.4768 -4.5716 -1.7072 31 1 2.6543 -8.9866 -1.0937 32 1 4.5023 -6.1607 -3.7069 33 1 2.6049 -3.9903 0.8503 34 1 3.0486 -3.4516 -0.8019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591974210.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:39 Heat of formation + Delta-G solvation = -30.942685 kcal Electronic energy + Delta-G solvation = -24212.118212 eV Core-core repulsion = 20257.019203 eV Total energy + Delta-G solvation = -3955.099009 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.096 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.50132 -42.51472 -40.80417 -38.53417 -36.85938 -35.21298 -33.32436 -32.27468 -31.65466 -29.40342 -28.44009 -26.53007 -24.87638 -24.29874 -23.02922 -21.08976 -19.92072 -19.87462 -19.21855 -17.86598 -17.84316 -17.65601 -16.91708 -16.71537 -16.23663 -15.38961 -15.03583 -14.63966 -14.35080 -13.99686 -13.87421 -13.60912 -13.08617 -12.69543 -12.28154 -11.98015 -11.87345 -11.75362 -11.46797 -11.41227 -11.29570 -10.95142 -10.78747 -10.66319 -10.53219 -10.50759 -10.06889 -9.62064 -9.34481 -8.75113 -8.48398 -8.26415 -6.36136 -4.45099 -0.66584 0.27232 0.90365 0.96067 2.78287 3.10210 3.12859 3.22481 3.25875 3.34292 3.80349 3.91828 4.16002 4.22984 4.56260 4.80405 4.92066 5.09859 5.19402 5.49008 5.58317 5.59780 5.77948 5.99815 6.06932 6.18960 6.48075 6.68299 6.80334 6.89087 7.21868 7.27659 7.32995 7.42309 7.64914 7.94541 8.57337 9.24089 9.36653 10.71253 Molecular weight = 297.10amu Principal moments of inertia in cm(-1) A = 0.031378 B = 0.003942 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.120988 B = 7101.317913 C = 7578.319910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.074 3.926 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.264 3.736 10 O -0.578 6.578 11 C -0.126 4.126 12 C 0.040 3.960 13 N -0.477 5.477 14 C 0.351 3.649 15 N -0.428 5.428 16 C 0.180 3.820 17 C -0.095 4.095 18 N 0.037 4.963 19 O -0.157 6.157 20 O -0.149 6.149 21 C -0.044 4.044 22 C 0.023 3.977 23 F -0.099 7.099 24 C 0.050 3.950 25 H 0.268 0.732 26 H 0.381 0.619 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.194 0.806 32 H 0.175 0.825 33 H 0.084 0.916 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.995 -10.714 -5.800 12.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.129 4.129 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.224 3.776 10 O -0.387 6.387 11 C -0.165 4.165 12 C -0.085 4.085 13 N -0.199 5.199 14 C 0.119 3.881 15 N -0.137 5.137 16 C 0.019 3.981 17 C -0.181 4.181 18 N 0.557 4.443 19 O -0.373 6.373 20 O -0.366 6.366 21 C -0.071 4.071 22 C -0.004 4.004 23 F -0.077 7.077 24 C -0.074 4.074 25 H 0.078 0.922 26 H 0.231 0.769 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.211 0.789 32 H 0.193 0.807 33 H 0.103 0.897 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.920 -10.957 -4.344 12.143 hybrid contribution 1.381 1.881 -1.744 2.914 sum 4.302 -9.076 -6.088 11.744 Atomic orbital electron populations 1.69725 1.05942 1.27641 1.49797 1.24979 0.95016 0.99515 0.93430 0.86384 0.80125 0.82791 0.77817 1.19629 1.20787 1.20656 1.21535 0.93656 0.90287 1.52389 0.91845 1.19236 0.86398 0.89761 0.82237 1.86146 1.51622 1.56321 1.44568 1.22992 1.02716 0.90034 1.00780 1.23185 0.96110 0.97540 0.91663 1.62082 1.17921 1.10856 1.29073 1.21116 0.88198 0.92261 0.86564 1.68050 1.21334 0.98773 1.25543 1.22977 0.86603 1.00650 0.87851 1.22082 1.03554 0.88219 1.04234 1.43302 0.99649 1.01713 0.99599 1.94566 1.31189 1.89476 1.22049 1.94557 1.71699 1.05282 1.65083 1.21451 0.97283 0.89502 0.98838 1.19515 1.00872 0.80905 0.99089 1.91646 1.94653 1.32567 1.88832 1.23631 0.95372 0.89304 0.99107 0.92168 0.76897 0.91088 0.90508 0.94082 0.90307 0.78921 0.80735 0.89736 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.41 11.00 55.43 0.61 -21.80 16 2 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 3 Si 0.90 19.65 29.54 -169.99 -5.02 14.63 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.54 -13.57 8.14 -34.44 -0.28 -13.85 16 8 H 0.06 1.59 7.78 -52.49 -0.41 1.18 16 9 C 0.26 6.12 0.95 -89.91 -0.09 6.04 16 10 O -0.58 -14.30 13.10 -35.23 -0.46 -14.76 16 11 C -0.13 -2.67 5.26 -25.38 -0.13 -2.81 16 12 C 0.04 0.72 6.20 -2.75 -0.02 0.71 16 13 N -0.48 -8.82 5.36 -169.14 -0.91 -9.73 16 14 C 0.35 5.52 5.86 -154.85 -0.91 4.62 16 15 N -0.43 -6.17 10.39 -12.36 -0.13 -6.30 16 16 C 0.18 2.03 10.70 -17.57 -0.19 1.84 16 17 C -0.09 -1.09 6.87 -79.80 -0.55 -1.64 16 18 N 0.04 0.46 4.45 34.03 0.15 0.61 16 19 O -0.16 -2.03 18.52 -29.46 -0.55 -2.58 16 20 O -0.15 -1.84 18.46 -29.46 -0.54 -2.38 16 21 C -0.04 -0.50 9.65 -39.26 -0.38 -0.88 16 22 C 0.02 0.32 6.21 -39.09 -0.24 0.07 16 23 F -0.10 -1.51 13.48 2.25 0.03 -1.48 16 24 C 0.05 1.03 5.39 -1.90 -0.01 1.02 16 25 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 26 H 0.38 9.47 7.46 45.56 0.34 9.81 16 27 H 0.07 1.56 7.84 -51.93 -0.41 1.16 16 28 H 0.08 1.70 7.99 -51.93 -0.41 1.28 16 29 H 0.04 0.67 6.02 -51.93 -0.31 0.36 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.19 1.61 7.61 -52.48 -0.40 1.21 16 32 H 0.18 1.63 7.69 -52.49 -0.40 1.23 16 33 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 34 H 0.07 1.28 5.60 -51.93 -0.29 0.99 16 LS Contribution 298.72 15.07 4.50 4.50 Total: -1.00 -26.35 298.72 -7.48 -33.83 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -2.28 Total: 8.59 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -2.89 Total: -3.14 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: -0.27 Total: -37.22 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -1.55 Total: -19.72 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.03 Total: -1.48 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.35 -7.48 -33.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974210.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.889 kcal (2) G-P(sol) polarization free energy of solvation -26.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds