Wall clock time and date at job start Tue Mar 31 2020 03:06:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30825 * 1
3 3 Si 1.86791 * 120.00408 * 2 1
4 4 H 1.48505 * 109.47434 * 273.02463 * 3 2 1
5 5 H 1.48507 * 109.47051 * 33.01892 * 3 2 1
6 6 H 1.48500 * 109.47280 * 153.02108 * 3 2 1
7 7 C 1.39947 * 119.99463 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00579 * 347.55784 * 7 2 1
9 9 C 1.41395 * 119.99700 * 167.82891 * 7 2 1
10 10 C 1.40735 * 120.24385 * 328.34242 * 9 7 2
11 11 C 1.37599 * 119.74501 * 179.69451 * 10 9 7
12 12 C 1.38661 * 120.24563 * 0.60571 * 11 10 9
13 13 C 1.38610 * 120.50305 * 359.66889 * 12 11 10
14 14 C 1.37635 * 120.24648 * 0.02562 * 13 12 11
15 15 S 1.76201 * 120.12930 * 180.02562 * 14 13 12
16 16 O 1.42098 * 106.40866 * 227.41395 * 15 14 13
17 17 O 1.42105 * 106.39984 * 0.33950 * 15 14 13
18 18 N 1.65605 * 107.21698 * 113.87128 * 15 14 13
19 19 C 1.47021 * 125.64356 * 96.53234 * 18 15 14
20 20 C 1.54322 * 107.26989 * 181.01938 * 19 18 15
21 21 C 1.55160 * 102.94079 * 22.19545 * 20 19 18
22 22 H 1.09003 * 111.00149 * 206.41887 * 21 20 19
23 23 O 1.42898 * 111.00490 * 82.61027 * 21 20 19
24 24 C 1.47416 * 125.65254 * 276.22048 * 18 15 14
25 25 H 0.97002 * 119.99548 * 0.02562 * 1 2 3
26 26 H 1.07996 * 120.13131 * 359.97438 * 10 9 7
27 27 H 1.07999 * 119.87998 * 180.29647 * 11 10 9
28 28 H 1.08003 * 119.75212 * 179.69160 * 12 11 10
29 29 H 1.07999 * 119.88034 * 180.02562 * 13 12 11
30 30 H 1.08994 * 109.88728 * 300.43680 * 19 18 15
31 31 H 1.09001 * 109.88844 * 61.60621 * 19 18 15
32 32 H 1.09002 * 110.72114 * 140.55314 * 20 19 18
33 33 H 1.09000 * 110.72315 * 263.65218 * 20 19 18
34 34 H 0.96699 * 114.00416 * 61.45674 * 23 21 20
35 35 H 1.08996 * 110.37159 * 274.74952 * 24 18 15
36 36 H 1.09000 * 110.36528 * 37.07342 * 24 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2423 1.6176 0.0000
4 1 2.4259 2.0833 -1.3981
5 1 1.4732 2.6333 0.7630
6 1 3.5704 1.4224 0.6352
7 6 2.0079 -1.2120 0.0005
8 1 1.4869 -2.1363 0.2025
9 6 3.3980 -1.2260 -0.2576
10 6 3.9683 -0.2715 -1.1203
11 6 5.3233 -0.2906 -1.3594
12 6 6.1241 -1.2533 -0.7638
13 6 5.5723 -2.2017 0.0831
14 6 4.2204 -2.1977 0.3415
15 16 3.5223 -3.4045 1.4190
16 8 2.3766 -3.9204 0.7554
17 8 4.5993 -4.2208 1.8586
18 7 2.9664 -2.6034 2.7575
19 6 1.5810 -2.1640 2.9791
20 6 1.5416 -1.4428 4.3429
21 6 3.0192 -1.0194 4.5548
22 1 3.2503 -0.9255 5.6159
23 8 3.3083 0.1960 3.8610
24 6 3.7771 -2.2184 3.9270
25 1 -0.4849 0.8401 -0.0004
26 1 3.3457 0.4760 -1.5894
27 1 5.7640 0.4438 -2.0173
28 1 7.1859 -1.2639 -0.9609
29 1 6.2054 -2.9467 0.5419
30 1 1.2786 -1.4778 2.1881
31 1 0.9164 -3.0278 2.9973
32 1 0.8925 -0.5683 4.2981
33 1 1.2159 -2.1232 5.1297
34 1 2.7834 0.9523 4.1570
35 1 3.8377 -3.0447 4.6353
36 1 4.7752 -1.9131 3.6127
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601353049.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:06:19
Heat of formation + Delta-G solvation = -96.776683 kcal
Electronic energy + Delta-G solvation = -23532.028817 eV
Core-core repulsion = 20107.995456 eV
Total energy + Delta-G solvation = -3424.033361 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 297.087 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-38.55323 -37.83398 -36.33294 -34.97661 -34.88614 -33.81646 -30.70796 -30.08216
-29.75028 -28.26323 -25.36944 -22.23736 -21.82616 -21.15590 -20.91250 -18.23512
-17.70338 -17.30785 -17.11499 -16.32460 -15.45100 -15.05404 -14.77511 -14.20804
-14.05874 -13.85321 -13.59594 -13.24557 -12.93726 -12.78498 -12.37605 -12.23180
-11.91380 -11.74838 -11.33039 -11.28498 -11.18163 -11.04788 -10.98855 -10.90395
-10.63885 -10.55910 -10.31462 -9.91688 -9.73037 -9.47600 -9.20673 -8.33571
-8.14460 -7.78218 -7.14827 -4.83622 1.42846 2.12148 2.56313 2.98512
3.06429 3.22849 3.82630 3.86227 4.28052 4.32021 4.69123 4.76514
4.94211 5.17401 5.19532 5.47037 5.61886 5.80940 5.85513 5.90309
5.92849 5.99122 6.05162 6.20770 6.31363 6.41139 6.58725 6.66760
6.83248 6.97881 7.05860 7.12735 7.31132 7.46898 7.59125 7.87283
7.87845 8.19030 8.35523 8.57189 9.82031
Molecular weight = 297.09amu
Principal moments of inertia in cm(-1)
A = 0.012683 B = 0.010797 C = 0.008033
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2207.139478 B = 2592.623575 C = 3484.983393
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.785 5.785
2 C 0.092 3.908
3 Si 0.907 3.093
4 H -0.272 1.272
5 H -0.289 1.289
6 H -0.234 1.234
7 C -0.457 4.457
8 H 0.130 0.870
9 C 0.171 3.829
10 C -0.234 4.234
11 C -0.045 4.045
12 C -0.257 4.257
13 C 0.016 3.984
14 C -0.765 4.765
15 S 2.721 3.279
16 O -0.963 6.963
17 O -0.993 6.993
18 N -1.001 6.001
19 C 0.117 3.883
20 C -0.160 4.160
21 C 0.092 3.908
22 H 0.069 0.931
23 O -0.546 6.546
24 C 0.133 3.867
25 H 0.290 0.710
26 H 0.105 0.895
27 H 0.099 0.901
28 H 0.101 0.899
29 H 0.113 0.887
30 H 0.102 0.898
31 H 0.059 0.941
32 H 0.079 0.921
33 H 0.076 0.924
34 H 0.373 0.627
35 H 0.077 0.923
36 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.425 2.570 8.746 9.433
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.406 5.406
2 C -0.131 4.131
3 Si 0.734 3.266
4 H -0.198 1.198
5 H -0.216 1.216
6 H -0.157 1.157
7 C -0.484 4.484
8 H 0.148 0.852
9 C 0.165 3.835
10 C -0.254 4.254
11 C -0.063 4.063
12 C -0.278 4.278
13 C -0.004 4.004
14 C -0.860 4.860
15 S 2.819 3.181
16 O -0.954 6.954
17 O -0.984 6.984
18 N -0.837 5.837
19 C -0.007 4.007
20 C -0.200 4.200
21 C 0.032 3.968
22 H 0.087 0.913
23 O -0.351 6.351
24 C 0.007 3.993
25 H 0.101 0.899
26 H 0.123 0.877
27 H 0.117 0.883
28 H 0.119 0.881
29 H 0.131 0.869
30 H 0.120 0.880
31 H 0.077 0.923
32 H 0.098 0.902
33 H 0.095 0.905
34 H 0.220 0.780
35 H 0.095 0.905
36 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 2.493 1.272 8.266 8.727
hybrid contribution 0.026 1.991 -0.131 1.995
sum 2.519 3.263 8.135 9.120
Atomic orbital electron populations
1.69671 1.07984 1.30733 1.32250 1.26185 0.94803 1.01659 0.90404
0.86387 0.81919 0.79309 0.79004 1.19799 1.21630 1.15668 1.20365
0.91369 0.97526 1.39106 0.85233 1.17069 0.92201 0.87948 0.86238
1.21207 0.95034 1.04156 1.04954 1.20824 0.93800 0.95858 0.95852
1.20494 0.98189 1.01265 1.07804 1.20387 0.92682 0.94633 0.92708
1.29956 1.02973 1.26487 1.26541 1.00556 0.72518 0.73148 0.71835
1.93502 1.50454 1.78071 1.73393 1.93448 1.56458 1.66326 1.82178
1.58466 1.16808 1.76325 1.32121 1.21908 0.81737 0.99147 0.97942
1.23342 0.97296 1.01214 0.98105 1.22954 0.93932 0.85608 0.94347
0.91297 1.86639 1.65457 1.18390 1.64630 1.21902 0.95251 0.94237
0.87951 0.89939 0.87728 0.88328 0.88131 0.86944 0.88014 0.92260
0.90209 0.90534 0.78003 0.90474 0.90279
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -19.04 13.93 55.55 0.77 -18.26 16
2 C 0.09 2.23 5.04 -17.34 -0.09 2.15 16
3 Si 0.91 19.57 24.41 -169.99 -4.15 15.42 16
4 H -0.27 -5.77 6.70 56.52 0.38 -5.39 16
5 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16
6 H -0.23 -5.30 6.66 56.52 0.38 -4.92 16
7 C -0.46 -11.74 6.63 -37.74 -0.25 -11.99 16
8 H 0.13 3.57 5.14 -52.49 -0.27 3.30 16
9 C 0.17 4.30 5.12 -106.82 -0.55 3.75 16
10 C -0.23 -5.58 6.99 -38.87 -0.27 -5.85 16
11 C -0.04 -0.96 10.02 -39.66 -0.40 -1.36 16
12 C -0.26 -5.42 10.05 -39.29 -0.39 -5.82 16
13 C 0.02 0.35 9.53 -39.66 -0.38 -0.03 16
14 C -0.77 -18.36 5.97 -38.87 -0.23 -18.59 16
15 S 2.72 61.52 5.30 -107.50 -0.57 60.95 16
16 O -0.96 -24.32 15.11 -57.17 -0.86 -25.19 16
17 O -0.99 -22.78 16.64 -57.17 -0.95 -23.73 16
18 N -1.00 -19.34 3.66 -111.30 -0.41 -19.75 16
19 C 0.12 2.14 6.49 -3.07 -0.02 2.12 16
20 C -0.16 -2.14 6.68 -24.90 -0.17 -2.30 16
21 C 0.09 1.23 4.43 -24.46 -0.11 1.12 16
22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
23 O -0.55 -8.40 13.48 -35.23 -0.48 -8.88 16
24 C 0.13 2.10 6.80 -2.42 -0.02 2.08 16
25 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16
26 H 0.11 2.43 4.49 -52.49 -0.24 2.19 16
27 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16
28 H 0.10 1.81 8.06 -52.48 -0.42 1.38 16
29 H 0.11 2.29 7.32 -52.49 -0.38 1.91 16
30 H 0.10 2.15 5.17 -51.93 -0.27 1.88 16
31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16
33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16
34 H 0.37 4.09 9.11 45.56 0.42 4.51 16
35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16
36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16
LS Contribution 301.23 15.07 4.54 4.54
Total: -1.00 -31.27 301.23 -8.28 -39.55
By element:
Atomic # 1 Polarization: 13.37 SS G_CDS: -3.31 Total: 10.07 kcal
Atomic # 6 Polarization: -31.86 SS G_CDS: -2.87 Total: -34.73 kcal
Atomic # 7 Polarization: -38.37 SS G_CDS: 0.37 Total: -38.01 kcal
Atomic # 8 Polarization: -55.50 SS G_CDS: -2.29 Total: -57.79 kcal
Atomic # 14 Polarization: 19.57 SS G_CDS: -4.15 Total: 15.42 kcal
Atomic # 16 Polarization: 61.52 SS G_CDS: -0.57 Total: 60.95 kcal
Total LS contribution 4.54 Total: 4.54 kcal
Total: -31.27 -8.28 -39.55 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601353049.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.222 kcal
(2) G-P(sol) polarization free energy of solvation -31.273 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.496 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.777 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds