Wall clock time and date at job start Tue Mar 31 2020 03:06:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30825 * 1
3 3 Si 1.86791 * 120.00408 * 2 1
4 4 H 1.48505 * 109.47434 * 273.02463 * 3 2 1
5 5 H 1.48507 * 109.47051 * 33.01892 * 3 2 1
6 6 H 1.48500 * 109.47280 * 153.02108 * 3 2 1
7 7 C 1.39947 * 119.99463 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00579 * 347.55784 * 7 2 1
9 9 C 1.41395 * 119.99700 * 167.82891 * 7 2 1
10 10 C 1.40735 * 120.24385 * 328.34242 * 9 7 2
11 11 C 1.37599 * 119.74501 * 179.69451 * 10 9 7
12 12 C 1.38661 * 120.24563 * 0.60571 * 11 10 9
13 13 C 1.38610 * 120.50305 * 359.66889 * 12 11 10
14 14 C 1.37635 * 120.24648 * 0.02562 * 13 12 11
15 15 S 1.76201 * 120.12930 * 180.02562 * 14 13 12
16 16 O 1.42098 * 106.40866 * 227.41395 * 15 14 13
17 17 O 1.42105 * 106.39984 * 0.33950 * 15 14 13
18 18 N 1.65605 * 107.21698 * 113.87128 * 15 14 13
19 19 C 1.47021 * 125.64356 * 96.53234 * 18 15 14
20 20 C 1.54322 * 107.26989 * 181.01938 * 19 18 15
21 21 C 1.55160 * 102.94079 * 22.19545 * 20 19 18
22 22 H 1.09003 * 111.00149 * 206.41887 * 21 20 19
23 23 O 1.42898 * 111.00490 * 82.61027 * 21 20 19
24 24 C 1.47416 * 125.65254 * 276.22048 * 18 15 14
25 25 H 0.97002 * 119.99548 * 0.02562 * 1 2 3
26 26 H 1.07996 * 120.13131 * 359.97438 * 10 9 7
27 27 H 1.07999 * 119.87998 * 180.29647 * 11 10 9
28 28 H 1.08003 * 119.75212 * 179.69160 * 12 11 10
29 29 H 1.07999 * 119.88034 * 180.02562 * 13 12 11
30 30 H 1.08994 * 109.88728 * 300.43680 * 19 18 15
31 31 H 1.09001 * 109.88844 * 61.60621 * 19 18 15
32 32 H 1.09002 * 110.72114 * 140.55314 * 20 19 18
33 33 H 1.09000 * 110.72315 * 263.65218 * 20 19 18
34 34 H 0.96699 * 114.00416 * 61.45674 * 23 21 20
35 35 H 1.08996 * 110.37159 * 274.74952 * 24 18 15
36 36 H 1.09000 * 110.36528 * 37.07342 * 24 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2423 1.6176 0.0000
4 1 2.4259 2.0833 -1.3981
5 1 1.4732 2.6333 0.7630
6 1 3.5704 1.4224 0.6352
7 6 2.0079 -1.2120 0.0005
8 1 1.4869 -2.1363 0.2025
9 6 3.3980 -1.2260 -0.2576
10 6 3.9683 -0.2715 -1.1203
11 6 5.3233 -0.2906 -1.3594
12 6 6.1241 -1.2533 -0.7638
13 6 5.5723 -2.2017 0.0831
14 6 4.2204 -2.1977 0.3415
15 16 3.5223 -3.4045 1.4190
16 8 2.3766 -3.9204 0.7554
17 8 4.5993 -4.2208 1.8586
18 7 2.9664 -2.6034 2.7575
19 6 1.5810 -2.1640 2.9791
20 6 1.5416 -1.4428 4.3429
21 6 3.0192 -1.0194 4.5548
22 1 3.2503 -0.9255 5.6159
23 8 3.3083 0.1960 3.8610
24 6 3.7771 -2.2184 3.9270
25 1 -0.4849 0.8401 -0.0004
26 1 3.3457 0.4760 -1.5894
27 1 5.7640 0.4438 -2.0173
28 1 7.1859 -1.2639 -0.9609
29 1 6.2054 -2.9467 0.5419
30 1 1.2786 -1.4778 2.1881
31 1 0.9164 -3.0278 2.9973
32 1 0.8925 -0.5683 4.2981
33 1 1.2159 -2.1232 5.1297
34 1 2.7834 0.9523 4.1570
35 1 3.8377 -3.0447 4.6353
36 1 4.7752 -1.9131 3.6127
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601353049.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:06:18
Heat of formation + Delta-G solvation = -122.240253 kcal
Electronic energy + Delta-G solvation = -23533.133000 eV
Core-core repulsion = 20107.995456 eV
Total energy + Delta-G solvation = -3425.137544 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 297.087 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-39.78969 -39.56990 -38.16844 -36.76703 -36.20244 -35.60978 -32.49834 -31.83693
-31.01272 -29.52197 -27.18092 -23.87720 -23.29861 -22.94524 -22.04122 -19.88276
-19.53052 -18.88202 -18.35311 -18.00704 -17.18579 -16.66568 -16.20121 -15.82415
-15.58846 -15.38861 -15.30759 -14.63551 -14.56796 -14.23793 -14.03244 -13.67612
-13.51848 -13.23606 -13.12070 -13.09062 -12.95872 -12.73420 -12.50695 -12.34106
-12.23392 -12.03297 -11.74460 -11.61341 -11.26657 -10.98655 -10.77759 -9.99463
-9.72318 -9.58117 -8.95980 -6.70771 -0.28707 0.34119 0.77795 1.25026
1.36113 1.49194 2.10476 2.23073 2.51142 2.92644 3.25080 3.31865
3.50799 3.83111 3.90427 4.16220 4.23218 4.27928 4.46138 4.59125
4.62263 4.66513 4.78965 4.88524 4.93891 4.96246 5.05144 5.20397
5.22576 5.37083 5.39512 5.51359 5.66256 5.73657 5.81531 6.08926
6.29209 6.53705 6.70538 7.01135 8.06966
Molecular weight = 297.09amu
Principal moments of inertia in cm(-1)
A = 0.012683 B = 0.010797 C = 0.008033
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2207.139478 B = 2592.623575 C = 3484.983393
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.814 5.814
2 C 0.068 3.932
3 Si 0.957 3.043
4 H -0.265 1.265
5 H -0.268 1.268
6 H -0.251 1.251
7 C -0.479 4.479
8 H 0.098 0.902
9 C 0.152 3.848
10 C -0.259 4.259
11 C -0.043 4.043
12 C -0.249 4.249
13 C 0.000 4.000
14 C -0.784 4.784
15 S 2.731 3.269
16 O -1.001 7.001
17 O -1.001 7.001
18 N -1.001 6.001
19 C 0.107 3.893
20 C -0.148 4.148
21 C 0.099 3.901
22 H 0.118 0.882
23 O -0.578 6.578
24 C 0.115 3.885
25 H 0.300 0.700
26 H 0.107 0.893
27 H 0.138 0.862
28 H 0.139 0.861
29 H 0.128 0.872
30 H 0.067 0.933
31 H 0.053 0.947
32 H 0.090 0.910
33 H 0.109 0.891
34 H 0.391 0.609
35 H 0.107 0.893
36 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.008 4.113 10.149 11.661
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.437 5.437
2 C -0.152 4.152
3 Si 0.781 3.219
4 H -0.191 1.191
5 H -0.195 1.195
6 H -0.175 1.175
7 C -0.507 4.507
8 H 0.116 0.884
9 C 0.147 3.853
10 C -0.279 4.279
11 C -0.061 4.061
12 C -0.269 4.269
13 C -0.020 4.020
14 C -0.878 4.878
15 S 2.829 3.171
16 O -0.992 6.992
17 O -0.992 6.992
18 N -0.840 5.840
19 C -0.017 4.017
20 C -0.187 4.187
21 C 0.039 3.961
22 H 0.135 0.865
23 O -0.386 6.386
24 C -0.010 4.010
25 H 0.111 0.889
26 H 0.124 0.876
27 H 0.156 0.844
28 H 0.157 0.843
29 H 0.146 0.854
30 H 0.085 0.915
31 H 0.072 0.928
32 H 0.109 0.891
33 H 0.127 0.873
34 H 0.240 0.760
35 H 0.125 0.875
36 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 4.069 2.822 9.666 10.860
hybrid contribution -0.364 1.430 -0.564 1.580
sum 3.704 4.253 9.101 10.707
Atomic orbital electron populations
1.69673 1.08796 1.31998 1.33220 1.26665 0.95279 1.03438 0.89814
0.85637 0.80195 0.76845 0.79249 1.19146 1.19453 1.17460 1.20193
0.91972 0.97109 1.41376 0.88423 1.17278 0.92207 0.88970 0.86814
1.21376 0.96482 1.04496 1.05526 1.21292 0.92899 0.96359 0.95547
1.21000 1.00143 0.99852 1.05894 1.20745 0.92283 0.95668 0.93322
1.30249 1.03951 1.26332 1.27262 1.00014 0.71775 0.73175 0.72131
1.93450 1.51735 1.79182 1.74799 1.93419 1.56595 1.66858 1.82347
1.58202 1.17801 1.76072 1.31932 1.21990 0.80972 0.98752 1.00030
1.23355 0.97973 1.01682 0.95666 1.23093 0.92917 0.83996 0.96126
0.86498 1.86584 1.66355 1.19737 1.65900 1.22380 0.94639 0.96714
0.87268 0.88857 0.87573 0.84408 0.84277 0.85371 0.91488 0.92828
0.89105 0.87302 0.75962 0.87490 0.91339
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -40.58 13.93 21.83 0.30 -40.27 16
2 C 0.07 3.37 5.04 85.26 0.43 3.80 16
3 Si 0.96 40.13 24.41 68.60 1.67 41.80 16
4 H -0.27 -10.74 6.70 99.48 0.67 -10.08 16
5 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16
6 H -0.25 -11.13 6.66 99.48 0.66 -10.47 16
7 C -0.48 -25.69 6.63 23.46 0.16 -25.54 16
8 H 0.10 5.78 5.14 -2.91 -0.01 5.76 16
9 C 0.15 7.82 5.12 -21.29 -0.11 7.71 16
10 C -0.26 -12.21 6.99 22.73 0.16 -12.05 16
11 C -0.04 -1.73 10.02 22.22 0.22 -1.50 16
12 C -0.25 -9.80 10.05 22.46 0.23 -9.57 16
13 C 0.00 -0.02 9.53 22.22 0.21 0.19 16
14 C -0.78 -38.17 5.97 22.73 0.14 -38.03 16
15 S 2.73 127.05 5.30 -56.49 -0.30 126.75 16
16 O -1.00 -53.41 15.11 -128.00 -1.93 -55.34 16
17 O -1.00 -46.30 16.64 -128.00 -2.13 -48.43 16
18 N -1.00 -39.00 3.66 -506.05 -1.85 -40.85 16
19 C 0.11 3.97 6.49 86.73 0.56 4.53 16
20 C -0.15 -3.60 6.68 31.78 0.21 -3.39 16
21 C 0.10 2.35 4.43 32.06 0.14 2.49 16
22 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16
23 O -0.58 -16.68 13.48 -148.98 -2.01 -18.69 16
24 C 0.11 3.44 6.80 86.93 0.59 4.03 16
25 H 0.30 13.26 8.30 -92.71 -0.77 12.49 16
26 H 0.11 4.86 4.49 -2.91 -0.01 4.85 16
27 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16
28 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16
29 H 0.13 5.06 7.32 -2.91 -0.02 5.04 16
30 H 0.07 2.97 5.17 -2.39 -0.01 2.96 16
31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16
32 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16
33 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16
34 H 0.39 7.70 9.11 -74.06 -0.68 7.03 16
35 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16
36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
Total: -1.00 -70.26 301.23 -2.94 -73.20
By element:
Atomic # 1 Polarization: 28.81 SS G_CDS: 0.37 Total: 29.17 kcal
Atomic # 6 Polarization: -70.27 SS G_CDS: 2.94 Total: -67.33 kcal
Atomic # 7 Polarization: -79.58 SS G_CDS: -1.55 Total: -81.13 kcal
Atomic # 8 Polarization: -116.39 SS G_CDS: -6.07 Total: -122.46 kcal
Atomic # 14 Polarization: 40.13 SS G_CDS: 1.67 Total: 41.80 kcal
Atomic # 16 Polarization: 127.05 SS G_CDS: -0.30 Total: 126.75 kcal
Total: -70.26 -2.94 -73.20 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601353049.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.040 kcal
(2) G-P(sol) polarization free energy of solvation -70.260 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.299 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.941 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.200 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.240 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds