Wall clock time and date at job start Tue Mar 31 2020 03:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86806 * 120.00449 * 2 1 4 4 H 1.48500 * 109.46785 * 269.99884 * 3 2 1 5 5 H 1.48494 * 109.46579 * 29.99905 * 3 2 1 6 6 H 1.48497 * 109.46990 * 150.00094 * 3 2 1 7 7 C 1.39949 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00091 * 174.14773 * 7 2 1 9 9 C 1.41401 * 120.00105 * 354.14714 * 7 2 1 10 10 C 1.40733 * 120.24203 * 325.54604 * 9 7 2 11 11 C 1.37597 * 119.74235 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24990 * 359.72381 * 11 10 9 13 13 C 1.38618 * 120.50017 * 0.55793 * 12 11 10 14 14 C 1.37638 * 120.24746 * 359.44214 * 13 12 11 15 15 S 1.76195 * 120.12817 * 180.30110 * 14 13 12 16 16 O 1.42096 * 106.40014 * 358.27085 * 15 14 13 17 17 O 1.42099 * 106.40353 * 131.19510 * 15 14 13 18 18 N 1.65603 * 107.21606 * 244.73189 * 15 14 13 19 19 C 1.46505 * 119.99939 * 62.12987 * 18 15 14 20 20 C 1.50699 * 109.46948 * 163.30400 * 19 18 15 21 21 C 1.31001 * 120.00089 * 126.22379 * 20 19 18 22 22 C 1.50701 * 119.99788 * 6.72420 * 21 20 19 23 23 O 1.42904 * 109.46947 * 135.05950 * 22 21 20 24 24 H 0.97002 * 119.99333 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.12634 * 0.02562 * 10 9 7 26 26 H 1.07998 * 119.87249 * 179.97438 * 11 10 9 27 27 H 1.07994 * 119.74869 * 180.29769 * 12 11 10 28 28 H 1.07992 * 119.87285 * 179.72102 * 13 12 11 29 29 H 0.97000 * 120.00527 * 242.12337 * 18 15 14 30 30 H 1.09004 * 109.46352 * 283.30220 * 19 18 15 31 31 H 1.08997 * 109.47365 * 43.29485 * 19 18 15 32 32 H 1.08001 * 119.99975 * 306.21312 * 20 19 18 33 33 H 1.07995 * 119.99812 * 186.72739 * 21 20 19 34 34 H 1.08998 * 109.47291 * 255.05808 * 22 21 20 35 35 H 1.08992 * 109.47548 * 15.06433 * 22 21 20 36 36 H 0.96699 * 113.99918 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6526 0.7000 6 1 3.5399 1.4400 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0837 -1.2145 -0.0959 9 6 1.3064 -2.4334 0.1238 10 6 0.1496 -2.5084 0.9217 11 6 -0.5248 -3.7023 1.0359 12 6 -0.0718 -4.8274 0.3639 13 6 1.0697 -4.7666 -0.4202 14 6 1.7602 -3.5829 -0.5489 15 16 3.2063 -3.5072 -1.5526 16 8 3.4174 -4.8208 -2.0518 17 8 3.0525 -2.3718 -2.3930 18 7 4.4822 -3.1774 -0.5498 19 6 4.8424 -4.1205 0.5118 20 6 6.2353 -3.8180 1.0012 21 6 6.4523 -3.6192 2.2777 22 6 5.3437 -3.8410 3.2740 23 8 5.8487 -4.5711 4.3939 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2075 -1.6321 1.4424 26 1 -1.4125 -3.7623 1.6479 27 1 -0.6101 -5.7592 0.4554 28 1 1.4160 -5.6502 -0.9355 29 1 4.9913 -2.3598 -0.6654 30 1 4.1379 -4.0237 1.3380 31 1 4.8071 -5.1376 0.1217 32 1 7.0546 -3.7654 0.2995 33 1 7.4258 -3.2962 2.6159 34 1 4.9601 -2.8781 3.6111 35 1 4.5402 -4.4076 2.8035 36 1 5.1881 -4.7501 5.0770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601463608.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:24 Heat of formation + Delta-G solvation = -111.979105 kcal Electronic energy + Delta-G solvation = -22251.557454 eV Core-core repulsion = 18826.864867 eV Total energy + Delta-G solvation = -3424.692587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.39276 -38.61167 -38.01354 -36.78030 -36.66420 -35.61527 -33.69282 -32.00497 -31.37620 -27.63587 -27.30396 -25.75950 -23.44884 -22.93845 -20.42415 -19.80091 -19.48122 -18.57848 -18.35237 -17.79466 -17.35516 -17.03866 -16.28997 -16.03910 -15.65805 -15.27053 -15.03192 -14.91339 -14.70873 -14.45221 -13.87434 -13.66428 -13.56892 -13.22311 -12.97862 -12.94783 -12.85393 -12.80800 -12.62218 -12.45536 -12.13454 -11.85304 -11.63906 -11.26986 -11.18304 -11.06531 -10.45982 -9.88171 -9.83479 -9.37345 -8.74934 -6.61250 -0.20134 0.51437 0.97226 1.09760 1.36935 1.48916 1.51343 2.16902 2.41979 2.67449 2.98059 3.45572 3.50604 3.76535 3.96646 4.09975 4.28102 4.32653 4.41130 4.50717 4.58662 4.69413 4.71480 4.83000 4.98932 5.11947 5.14344 5.29818 5.52444 5.56352 5.70251 5.73492 5.83701 5.99099 6.08808 6.23585 6.47516 6.71454 6.82856 6.86735 8.22198 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.010879 B = 0.006982 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.246665 B = 4009.106559 C = 4496.342613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.039 3.961 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.261 1.261 6 H -0.242 1.242 7 C -0.482 4.482 8 H 0.095 0.905 9 C 0.166 3.834 10 C -0.179 4.179 11 C -0.075 4.075 12 C -0.243 4.243 13 C -0.020 4.020 14 C -0.785 4.785 15 S 2.720 3.280 16 O -1.009 7.009 17 O -0.997 6.997 18 N -1.106 6.106 19 C 0.134 3.866 20 C -0.151 4.151 21 C -0.140 4.140 22 C 0.086 3.914 23 O -0.586 6.586 24 H 0.293 0.707 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.422 0.578 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.132 0.868 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.726 -3.039 6.881 10.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.177 4.177 3 Si 0.792 3.208 4 H -0.195 1.195 5 H -0.185 1.185 6 H -0.165 1.165 7 C -0.510 4.510 8 H 0.113 0.887 9 C 0.162 3.838 10 C -0.199 4.199 11 C -0.094 4.094 12 C -0.263 4.263 13 C -0.040 4.040 14 C -0.879 4.879 15 S 2.816 3.184 16 O -0.999 6.999 17 O -0.987 6.987 18 N -0.866 5.866 19 C 0.009 3.991 20 C -0.170 4.170 21 C -0.160 4.160 22 C 0.009 3.991 23 O -0.394 6.394 24 H 0.103 0.897 25 H 0.129 0.871 26 H 0.141 0.859 27 H 0.147 0.853 28 H 0.142 0.858 29 H 0.257 0.743 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 8.028 -3.156 5.629 10.300 hybrid contribution -0.877 1.122 0.682 1.579 sum 7.151 -2.034 6.311 9.752 Atomic orbital electron populations 1.69802 1.08873 1.31093 1.34564 1.26732 0.95674 1.04588 0.90748 0.85328 0.79941 0.75949 0.79549 1.19514 1.18542 1.16510 1.20092 0.96190 0.90969 1.43794 0.88690 1.17320 0.90999 0.90338 0.85162 1.21538 0.99104 0.97040 1.02254 1.21276 0.97895 0.93020 0.97196 1.20937 1.00397 0.99014 1.05989 1.20618 0.94003 0.95006 0.94328 1.30248 1.26695 1.02435 1.28477 1.00359 0.73255 0.71651 0.73103 1.93428 1.86331 1.41059 1.79059 1.93496 1.86531 1.52573 1.66103 1.55255 1.48640 1.33147 1.49572 1.20505 0.95774 0.92750 0.90096 1.22864 0.96566 1.00766 0.96844 1.22793 1.00397 0.99108 0.93685 1.21381 0.94860 0.96016 0.86832 1.86396 1.42578 1.77457 1.33000 0.89658 0.87100 0.85856 0.85309 0.85824 0.74255 0.90914 0.89838 0.84173 0.84991 0.92112 0.92115 0.75193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.85 10.99 21.83 0.24 -40.61 16 2 C 0.04 1.89 5.31 85.26 0.45 2.34 16 3 Si 0.97 36.61 29.56 68.60 2.03 38.64 16 4 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 6 H -0.24 -8.43 7.11 99.48 0.71 -7.72 16 7 C -0.48 -23.86 7.46 23.46 0.17 -23.69 16 8 H 0.10 4.34 6.09 -2.91 -0.02 4.32 16 9 C 0.17 8.32 5.50 -21.29 -0.12 8.20 16 10 C -0.18 -8.69 8.63 22.73 0.20 -8.49 16 11 C -0.08 -3.18 10.02 22.22 0.22 -2.95 16 12 C -0.24 -9.83 10.05 22.46 0.23 -9.60 16 13 C -0.02 -0.86 9.53 22.22 0.21 -0.65 16 14 C -0.78 -36.49 5.88 22.73 0.13 -36.36 16 15 S 2.72 116.19 4.97 -56.49 -0.28 115.91 16 16 O -1.01 -44.51 16.52 -128.00 -2.11 -46.62 16 17 O -1.00 -49.39 16.70 -128.00 -2.14 -51.53 16 18 N -1.11 -36.69 5.02 -190.78 -0.96 -37.65 16 19 C 0.13 3.81 6.26 85.63 0.54 4.34 16 20 C -0.15 -3.43 9.66 25.64 0.25 -3.18 16 21 C -0.14 -3.10 9.89 25.65 0.25 -2.85 16 22 C 0.09 1.94 6.95 71.24 0.50 2.44 16 23 O -0.59 -12.57 13.64 -148.98 -2.03 -14.60 16 24 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 25 H 0.11 5.53 6.50 -2.91 -0.02 5.51 16 26 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 27 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 28 H 0.12 4.87 7.32 -2.91 -0.02 4.85 16 29 H 0.42 12.37 8.51 -96.74 -0.82 11.55 16 30 H 0.07 2.11 5.38 -2.39 -0.01 2.09 16 31 H 0.08 2.35 7.79 -2.39 -0.02 2.33 16 32 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.42 5.58 -2.39 -0.01 1.40 16 36 H 0.40 5.03 9.12 -74.06 -0.68 4.36 16 Total: -1.00 -66.32 318.82 -2.59 -68.91 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: -0.36 Total: 38.00 kcal Atomic # 6 Polarization: -73.47 SS G_CDS: 3.03 Total: -70.44 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -0.72 Total: -78.26 kcal Atomic # 8 Polarization: -106.47 SS G_CDS: -6.28 Total: -112.76 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 2.03 Total: 38.64 kcal Atomic # 16 Polarization: 116.19 SS G_CDS: -0.28 Total: 115.91 kcal Total: -66.32 -2.59 -68.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601463608.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.072 kcal (2) G-P(sol) polarization free energy of solvation -66.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds