Wall clock time and date at job start Tue Mar 31 2020 03:16:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45204 * 1
3 3 C 1.34223 * 116.99709 * 2 1
4 4 O 1.20826 * 120.00112 * 359.97438 * 3 2 1
5 5 C 1.50707 * 119.99894 * 179.97438 * 3 2 1
6 6 N 1.46501 * 109.47159 * 180.02562 * 5 3 2
7 7 C 1.36898 * 119.99409 * 263.08329 * 6 5 3
8 8 H 1.08004 * 119.99930 * 206.62907 * 7 6 5
9 9 C 1.39024 * 120.00496 * 26.62870 * 7 6 5
10 10 N 1.31381 * 119.99877 * 8.00541 * 9 7 6
11 11 Si 1.86801 * 120.00142 * 188.00473 * 9 7 6
12 12 H 1.48494 * 109.47134 * 59.99831 * 11 9 7
13 13 H 1.48495 * 109.47110 * 180.02562 * 11 9 7
14 14 H 1.48504 * 109.46907 * 300.00217 * 11 9 7
15 15 C 1.34772 * 120.00434 * 83.08239 * 6 5 3
16 16 O 1.21627 * 119.99681 * 5.00015 * 15 6 5
17 17 C 1.47495 * 120.00271 * 185.00848 * 15 6 5
18 18 C 1.39785 * 120.08642 * 29.38366 * 17 15 6
19 19 C 1.37717 * 119.94208 * 179.76807 * 18 17 15
20 20 C 1.38943 * 120.12419 * 0.51268 * 19 18 17
21 21 O 1.35764 * 119.91150 * 179.76344 * 20 19 18
22 22 C 1.39179 * 120.17110 * 359.49172 * 20 19 18
23 23 F 1.35104 * 119.97017 * 180.27500 * 22 20 19
24 24 C 1.37879 * 120.05421 * 0.24861 * 22 20 19
25 25 H 1.09001 * 109.47538 * 299.99980 * 1 2 3
26 26 H 1.08994 * 109.46892 * 60.00204 * 1 2 3
27 27 H 1.09001 * 109.46850 * 179.97438 * 1 2 3
28 28 H 1.08995 * 109.46726 * 60.00056 * 5 3 2
29 29 H 1.09005 * 109.46617 * 299.99794 * 5 3 2
30 30 H 0.96996 * 120.00389 * 179.97438 * 10 9 7
31 31 H 1.08003 * 120.02741 * 0.03336 * 18 17 15
32 32 H 1.08005 * 119.93773 * 180.26058 * 19 18 17
33 33 H 0.96703 * 114.00095 * 269.72899 * 21 20 19
34 34 H 1.08003 * 120.05978 * 179.97438 * 24 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1960 0.0000
4 8 1.4032 2.2093 -0.0005
5 6 3.5663 1.2749 0.0006
6 7 3.9817 2.6798 0.0011
7 6 4.3131 3.2959 -1.1757
8 1 4.9998 4.1295 -1.1740
9 6 3.7658 2.8486 -2.3728
10 7 2.8145 1.9424 -2.3621
11 14 4.3828 3.5359 -3.9964
12 1 5.8332 3.2496 -4.1359
13 1 3.6424 2.9009 -5.1161
14 1 4.1629 5.0043 -4.0279
15 6 4.0375 3.3657 1.1599
16 8 3.8317 2.7956 2.2144
17 6 4.3480 4.8075 1.1493
18 6 3.9948 5.5923 0.0478
19 6 4.2819 6.9392 0.0431
20 6 4.9316 7.5175 1.1266
21 8 5.2168 8.8448 1.1154
22 6 5.2857 6.7408 2.2259
23 9 5.9123 7.3084 3.2796
24 6 4.9970 5.3926 2.2405
25 1 -0.3634 0.5138 0.8900
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 3.9563 0.7806 -0.8891
29 1 3.9557 0.7810 0.8909
30 1 2.4324 1.6305 -3.1973
31 1 3.4933 5.1436 -0.7969
32 1 4.0051 7.5464 -0.8062
33 1 6.0817 9.0581 0.7391
34 1 5.2721 4.7897 3.0933
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000613509558.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:16:50
Heat of formation + Delta-G solvation = -158.702216 kcal
Electronic energy + Delta-G solvation = -24384.858178 eV
Core-core repulsion = 20391.926349 eV
Total energy + Delta-G solvation = -3992.931829 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 297.089 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-48.57466 -39.86544 -39.13589 -38.18516 -36.19057 -35.48047 -34.76388 -31.79141
-30.36425 -30.01563 -28.15430 -26.29592 -25.15310 -22.94589 -22.35352 -20.51443
-19.55128 -18.45610 -18.03410 -16.85711 -16.64081 -16.20317 -15.81573 -15.52801
-15.49382 -15.12045 -14.79618 -14.42955 -14.42150 -13.78587 -13.62862 -13.15521
-13.09938 -12.58861 -12.45325 -12.09101 -11.85711 -11.65186 -11.47079 -11.33898
-11.29422 -10.93667 -10.73753 -10.56346 -10.34190 -9.86841 -9.60724 -9.15051
-8.87944 -8.61217 -8.15801 -8.05222 -6.68593 -4.26098 1.14777 1.55786
2.97221 3.06004 3.07645 3.29015 3.61446 3.72314 3.91275 4.09610
4.28782 4.38576 4.67932 4.84485 5.19420 5.51602 5.64469 5.67290
5.71318 5.74633 5.89897 6.04074 6.13123 6.27351 6.32229 6.43904
6.56186 6.65390 6.88652 7.04452 7.16680 7.35515 7.47654 7.71242
8.04460 8.75335 9.02967 9.14142 9.54582 10.37455
Molecular weight = 297.09amu
Principal moments of inertia in cm(-1)
A = 0.015573 B = 0.005928 C = 0.004695
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1797.526308 B = 4721.921228 C = 5962.966043
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.044 3.956
2 O -0.375 6.375
3 C 0.487 3.513
4 O -0.500 6.500
5 C 0.157 3.843
6 N -0.416 5.416
7 C -0.341 4.341
8 H 0.109 0.891
9 C 0.042 3.958
10 N -0.865 5.865
11 Si 0.929 3.071
12 H -0.270 1.270
13 H -0.281 1.281
14 H -0.268 1.268
15 C 0.507 3.493
16 O -0.594 6.594
17 C -0.071 4.071
18 C -0.066 4.066
19 C -0.136 4.136
20 C 0.074 3.926
21 O -0.491 6.491
22 C 0.053 3.947
23 F -0.140 7.140
24 C -0.101 4.101
25 H 0.050 0.950
26 H 0.055 0.945
27 H 0.086 0.914
28 H 0.125 0.875
29 H 0.083 0.917
30 H 0.278 0.722
31 H 0.173 0.827
32 H 0.137 0.863
33 H 0.386 0.614
34 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.914 2.600 -0.641 3.957
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.050 4.050
2 O -0.293 6.293
3 C 0.329 3.671
4 O -0.384 6.384
5 C 0.032 3.968
6 N -0.133 5.133
7 C -0.468 4.468
8 H 0.127 0.873
9 C -0.165 4.165
10 N -0.502 5.502
11 Si 0.754 3.246
12 H -0.195 1.195
13 H -0.206 1.206
14 H -0.193 1.193
15 C 0.298 3.702
16 O -0.481 6.481
17 C -0.075 4.075
18 C -0.085 4.085
19 C -0.155 4.155
20 C 0.028 3.972
21 O -0.301 6.301
22 C 0.034 3.966
23 F -0.119 7.119
24 C -0.121 4.121
25 H 0.069 0.931
26 H 0.074 0.926
27 H 0.104 0.896
28 H 0.142 0.858
29 H 0.101 0.899
30 H 0.089 0.911
31 H 0.190 0.810
32 H 0.155 0.845
33 H 0.242 0.758
34 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges 1.914 2.551 -0.007 3.189
hybrid contribution 0.464 0.492 -1.070 1.266
sum 2.378 3.043 -1.078 4.009
Atomic orbital electron populations
1.22935 0.78586 1.01840 1.01667 1.86444 1.21743 1.35375 1.85723
1.23761 0.92129 0.80622 0.70624 1.90515 1.66459 1.36346 1.45125
1.20444 0.87444 0.85210 1.03742 1.43125 1.55983 1.08034 1.06202
1.19790 1.26043 1.17947 0.83060 0.87317 1.25382 0.94430 0.96507
1.00134 1.69616 1.22841 1.28858 1.28857 0.85944 0.78978 0.79422
0.80221 1.19486 1.20643 1.19331 1.17895 0.82405 0.85795 0.84136
1.90662 1.56350 1.69878 1.31175 1.19843 0.98870 0.95001 0.93741
1.22324 0.95502 0.91841 0.98817 1.21330 1.01141 0.95303 0.97703
1.18608 1.01777 0.83203 0.93626 1.84811 1.40639 1.19448 1.85194
1.17835 1.01009 0.91497 0.86299 1.91453 1.80283 1.85166 1.55000
1.21107 0.98912 0.92328 0.99787 0.93109 0.92612 0.89584 0.85772
0.89868 0.91149 0.80977 0.84548 0.75799 0.84009
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.74 10.56 101.05 1.07 1.81 16
2 O -0.38 -7.81 10.57 -39.24 -0.41 -8.22 16
3 C 0.49 11.59 6.00 36.01 0.22 11.81 16
4 O -0.50 -13.32 15.50 -18.75 -0.29 -13.61 16
5 C 0.16 3.57 5.16 -5.19 -0.03 3.54 16
6 N -0.42 -9.88 2.17 -117.29 -0.26 -10.14 16
7 C -0.34 -7.75 6.63 -15.00 -0.10 -7.84 16
8 H 0.11 2.31 5.73 -52.48 -0.30 2.01 16
9 C 0.04 0.94 5.13 -17.45 -0.09 0.86 16
10 N -0.87 -20.64 8.79 55.50 0.49 -20.15 16
11 Si 0.93 17.58 29.56 -169.99 -5.03 12.56 16
12 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16
13 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16
14 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16
15 C 0.51 12.19 7.14 -12.49 -0.09 12.10 16
16 O -0.59 -15.52 16.36 5.25 0.09 -15.43 16
17 C -0.07 -1.49 5.47 -104.97 -0.57 -2.06 16
18 C -0.07 -1.27 7.62 -39.19 -0.30 -1.56 16
19 C -0.14 -2.20 9.96 -39.51 -0.39 -2.60 16
20 C 0.07 1.19 6.72 -38.97 -0.26 0.93 16
21 O -0.49 -6.81 13.35 -19.00 -0.25 -7.06 16
22 C 0.05 0.93 7.30 -39.36 -0.29 0.64 16
23 F -0.14 -2.39 17.10 2.25 0.04 -2.35 16
24 C -0.10 -1.92 9.56 -39.13 -0.37 -2.29 16
25 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16
26 H 0.06 0.97 8.13 -51.93 -0.42 0.54 16
27 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16
28 H 0.12 2.76 6.63 -51.93 -0.34 2.41 16
29 H 0.08 1.78 7.57 -51.93 -0.39 1.39 16
30 H 0.28 6.40 8.31 -40.82 -0.34 6.06 16
31 H 0.17 3.55 5.55 -52.48 -0.29 3.26 16
32 H 0.14 1.87 8.06 -52.48 -0.42 1.44 16
33 H 0.39 3.35 9.06 45.56 0.41 3.76 16
34 H 0.14 2.62 7.91 -52.48 -0.42 2.21 16
LS Contribution 305.20 15.07 4.60 4.60
Total: -1.00 -30.17 305.20 -4.40 -34.57
By element:
Atomic # 1 Polarization: 12.09 SS G_CDS: -2.16 Total: 9.93 kcal
Atomic # 6 Polarization: 16.53 SS G_CDS: -1.21 Total: 15.32 kcal
Atomic # 7 Polarization: -30.52 SS G_CDS: 0.23 Total: -30.29 kcal
Atomic # 8 Polarization: -43.46 SS G_CDS: -0.87 Total: -44.34 kcal
Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal
Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.56 kcal
Total LS contribution 4.60 Total: 4.60 kcal
Total: -30.17 -4.40 -34.57 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000613509558.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -124.137 kcal
(2) G-P(sol) polarization free energy of solvation -30.170 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.307 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.395 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.566 kcal
(6) G-S(sol) free energy of system = (1) + (5) -158.702 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds