Wall clock time and date at job start Tue Mar 31 2020 03:16:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45204 * 1
3 3 C 1.34223 * 116.99709 * 2 1
4 4 O 1.20826 * 120.00112 * 359.97438 * 3 2 1
5 5 C 1.50707 * 119.99894 * 179.97438 * 3 2 1
6 6 N 1.46501 * 109.47159 * 180.02562 * 5 3 2
7 7 C 1.36898 * 119.99409 * 263.08329 * 6 5 3
8 8 H 1.08004 * 119.99930 * 206.62907 * 7 6 5
9 9 C 1.39024 * 120.00496 * 26.62870 * 7 6 5
10 10 N 1.31381 * 119.99877 * 8.00541 * 9 7 6
11 11 Si 1.86801 * 120.00142 * 188.00473 * 9 7 6
12 12 H 1.48494 * 109.47134 * 59.99831 * 11 9 7
13 13 H 1.48495 * 109.47110 * 180.02562 * 11 9 7
14 14 H 1.48504 * 109.46907 * 300.00217 * 11 9 7
15 15 C 1.34772 * 120.00434 * 83.08239 * 6 5 3
16 16 O 1.21627 * 119.99681 * 5.00015 * 15 6 5
17 17 C 1.47495 * 120.00271 * 185.00848 * 15 6 5
18 18 C 1.39785 * 120.08642 * 29.38366 * 17 15 6
19 19 C 1.37717 * 119.94208 * 179.76807 * 18 17 15
20 20 C 1.38943 * 120.12419 * 0.51268 * 19 18 17
21 21 O 1.35764 * 119.91150 * 179.76344 * 20 19 18
22 22 C 1.39179 * 120.17110 * 359.49172 * 20 19 18
23 23 F 1.35104 * 119.97017 * 180.27500 * 22 20 19
24 24 C 1.37879 * 120.05421 * 0.24861 * 22 20 19
25 25 H 1.09001 * 109.47538 * 299.99980 * 1 2 3
26 26 H 1.08994 * 109.46892 * 60.00204 * 1 2 3
27 27 H 1.09001 * 109.46850 * 179.97438 * 1 2 3
28 28 H 1.08995 * 109.46726 * 60.00056 * 5 3 2
29 29 H 1.09005 * 109.46617 * 299.99794 * 5 3 2
30 30 H 0.96996 * 120.00389 * 179.97438 * 10 9 7
31 31 H 1.08003 * 120.02741 * 0.03336 * 18 17 15
32 32 H 1.08005 * 119.93773 * 180.26058 * 19 18 17
33 33 H 0.96703 * 114.00095 * 269.72899 * 21 20 19
34 34 H 1.08003 * 120.05978 * 179.97438 * 24 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1960 0.0000
4 8 1.4032 2.2093 -0.0005
5 6 3.5663 1.2749 0.0006
6 7 3.9817 2.6798 0.0011
7 6 4.3131 3.2959 -1.1757
8 1 4.9998 4.1295 -1.1740
9 6 3.7658 2.8486 -2.3728
10 7 2.8145 1.9424 -2.3621
11 14 4.3828 3.5359 -3.9964
12 1 5.8332 3.2496 -4.1359
13 1 3.6424 2.9009 -5.1161
14 1 4.1629 5.0043 -4.0279
15 6 4.0375 3.3657 1.1599
16 8 3.8317 2.7956 2.2144
17 6 4.3480 4.8075 1.1493
18 6 3.9948 5.5923 0.0478
19 6 4.2819 6.9392 0.0431
20 6 4.9316 7.5175 1.1266
21 8 5.2168 8.8448 1.1154
22 6 5.2857 6.7408 2.2259
23 9 5.9123 7.3084 3.2796
24 6 4.9970 5.3926 2.2405
25 1 -0.3634 0.5138 0.8900
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 3.9563 0.7806 -0.8891
29 1 3.9557 0.7810 0.8909
30 1 2.4324 1.6305 -3.1973
31 1 3.4933 5.1436 -0.7969
32 1 4.0051 7.5464 -0.8062
33 1 6.0817 9.0581 0.7391
34 1 5.2721 4.7897 3.0933
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000613509558.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:16:49
Heat of formation + Delta-G solvation = -178.623090 kcal
Electronic energy + Delta-G solvation = -24385.722012 eV
Core-core repulsion = 20391.926349 eV
Total energy + Delta-G solvation = -3993.795663 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 297.089 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-49.93470 -41.56752 -40.74059 -39.70953 -37.58203 -37.23478 -36.59004 -33.56227
-31.79244 -31.55210 -29.73445 -27.84189 -26.87745 -24.43418 -23.76993 -22.21676
-21.28962 -19.87444 -19.46940 -18.55087 -18.38188 -17.66224 -17.35572 -17.18548
-16.98651 -16.73266 -16.21626 -16.11549 -15.94434 -15.39741 -14.94524 -14.78497
-14.55211 -14.25774 -14.09164 -13.61364 -13.33821 -13.16235 -12.99470 -12.90189
-12.85319 -12.61382 -12.34206 -12.10487 -11.67263 -11.55425 -11.39277 -10.94262
-10.68006 -10.04202 -9.82666 -9.58250 -8.40399 -6.04221 -0.27213 0.15000
1.46315 1.52163 1.61469 1.68395 1.79916 2.13924 2.31197 2.57907
2.73266 2.96219 3.14356 3.33941 3.80989 3.98381 4.22120 4.23747
4.29060 4.36144 4.41966 4.49562 4.68192 4.71906 4.73709 4.94511
5.02386 5.20830 5.36501 5.46258 5.58977 5.70832 5.74010 6.28762
6.72511 6.99648 7.21401 7.35746 7.76393 8.65515
Molecular weight = 297.09amu
Principal moments of inertia in cm(-1)
A = 0.015573 B = 0.005928 C = 0.004695
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1797.526308 B = 4721.921228 C = 5962.966043
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.039 3.961
2 O -0.377 6.377
3 C 0.489 3.511
4 O -0.536 6.536
5 C 0.153 3.847
6 N -0.423 5.423
7 C -0.351 4.351
8 H 0.121 0.879
9 C 0.005 3.995
10 N -0.892 5.892
11 Si 0.993 3.007
12 H -0.262 1.262
13 H -0.289 1.289
14 H -0.257 1.257
15 C 0.493 3.507
16 O -0.630 6.630
17 C -0.100 4.100
18 C -0.068 4.068
19 C -0.123 4.123
20 C 0.100 3.900
21 O -0.491 6.491
22 C 0.050 3.950
23 F -0.138 7.138
24 C -0.103 4.103
25 H 0.049 0.951
26 H 0.047 0.953
27 H 0.133 0.867
28 H 0.126 0.874
29 H 0.089 0.911
30 H 0.275 0.725
31 H 0.156 0.844
32 H 0.170 0.830
33 H 0.415 0.585
34 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.550 4.369 -1.795 5.909
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 O -0.294 6.294
3 C 0.332 3.668
4 O -0.424 6.424
5 C 0.028 3.972
6 N -0.139 5.139
7 C -0.477 4.477
8 H 0.139 0.861
9 C -0.199 4.199
10 N -0.529 5.529
11 Si 0.816 3.184
12 H -0.187 1.187
13 H -0.215 1.215
14 H -0.181 1.181
15 C 0.285 3.715
16 O -0.520 6.520
17 C -0.103 4.103
18 C -0.087 4.087
19 C -0.141 4.141
20 C 0.053 3.947
21 O -0.305 6.305
22 C 0.030 3.970
23 F -0.116 7.116
24 C -0.123 4.123
25 H 0.068 0.932
26 H 0.065 0.935
27 H 0.151 0.849
28 H 0.144 0.856
29 H 0.107 0.893
30 H 0.085 0.915
31 H 0.174 0.826
32 H 0.187 0.813
33 H 0.275 0.725
34 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges 2.582 4.321 -1.170 5.168
hybrid contribution 0.241 -0.012 -0.668 0.710
sum 2.823 4.309 -1.838 5.470
Atomic orbital electron populations
1.23284 0.76156 1.04824 1.01196 1.86415 1.24102 1.33753 1.85090
1.23877 0.92448 0.80827 0.69617 1.90481 1.67269 1.37612 1.47022
1.20518 0.87346 0.85403 1.03951 1.43344 1.55576 1.08314 1.06666
1.20135 1.26353 1.18400 0.82856 0.86126 1.26199 0.94207 0.96524
1.02937 1.69724 1.23915 1.30049 1.29255 0.84964 0.78483 0.79190
0.75795 1.18690 1.21462 1.18074 1.18464 0.82161 0.87196 0.83724
1.90606 1.58130 1.71015 1.32224 1.19674 1.01548 0.93489 0.95551
1.22119 0.95770 0.93094 0.97730 1.21526 0.99861 0.94107 0.98605
1.18543 0.99816 0.83839 0.92471 1.84750 1.42781 1.17491 1.85476
1.17847 1.01190 0.91016 0.86910 1.91461 1.80215 1.84929 1.55025
1.21031 0.98965 0.93212 0.99106 0.93247 0.93460 0.84858 0.85590
0.89337 0.91460 0.82632 0.81265 0.72486 0.84569
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.29 10.56 113.37 1.20 2.48 16
2 O -0.38 -15.78 10.57 -51.35 -0.54 -16.32 16
3 C 0.49 23.89 6.00 71.24 0.43 24.32 16
4 O -0.54 -29.45 15.50 21.97 0.34 -29.11 16
5 C 0.15 7.19 5.16 85.64 0.44 7.64 16
6 N -0.42 -20.62 2.17 -643.23 -1.40 -22.02 16
7 C -0.35 -16.01 6.63 84.09 0.56 -15.46 16
8 H 0.12 5.08 5.73 -2.91 -0.02 5.07 16
9 C 0.00 0.20 5.13 84.95 0.44 0.64 16
10 N -0.89 -43.07 8.79 21.68 0.19 -42.88 16
11 Si 0.99 35.17 29.56 68.60 2.03 37.20 16
12 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16
13 H -0.29 -10.53 7.11 99.48 0.71 -9.82 16
14 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16
15 C 0.49 24.47 7.14 86.68 0.62 25.09 16
16 O -0.63 -34.35 16.36 -4.12 -0.07 -34.42 16
17 C -0.10 -4.20 5.47 -20.09 -0.11 -4.31 16
18 C -0.07 -2.55 7.62 22.52 0.17 -2.37 16
19 C -0.12 -3.59 9.96 22.32 0.22 -3.37 16
20 C 0.10 2.88 6.72 22.67 0.15 3.03 16
21 O -0.49 -11.40 13.35 -90.91 -1.21 -12.61 16
22 C 0.05 1.65 7.30 22.41 0.16 1.81 16
23 F -0.14 -4.41 17.10 44.97 0.77 -3.64 16
24 C -0.10 -3.89 9.56 22.56 0.22 -3.68 16
25 H 0.05 1.63 8.13 -2.39 -0.02 1.62 16
26 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16
27 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16
28 H 0.13 5.77 6.63 -2.39 -0.02 5.76 16
29 H 0.09 3.96 7.57 -2.38 -0.02 3.94 16
30 H 0.28 12.83 8.31 -92.71 -0.77 12.06 16
31 H 0.16 6.37 5.55 -2.91 -0.02 6.35 16
32 H 0.17 3.85 8.06 -2.91 -0.02 3.82 16
33 H 0.41 5.09 9.06 -74.05 -0.67 4.42 16
34 H 0.14 5.18 7.91 -2.91 -0.02 5.16 16
Total: -1.00 -66.08 305.20 5.11 -60.98
By element:
Atomic # 1 Polarization: 26.49 SS G_CDS: 0.51 Total: 27.00 kcal
Atomic # 6 Polarization: 31.33 SS G_CDS: 4.49 Total: 35.82 kcal
Atomic # 7 Polarization: -63.69 SS G_CDS: -1.21 Total: -64.89 kcal
Atomic # 8 Polarization: -90.98 SS G_CDS: -1.48 Total: -92.46 kcal
Atomic # 9 Polarization: -4.41 SS G_CDS: 0.77 Total: -3.64 kcal
Atomic # 14 Polarization: 35.17 SS G_CDS: 2.03 Total: 37.20 kcal
Total: -66.08 5.11 -60.98 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000613509558.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -117.648 kcal
(2) G-P(sol) polarization free energy of solvation -66.083 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.730 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.975 kcal
(6) G-S(sol) free energy of system = (1) + (5) -178.623 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds