Wall clock time and date at job start Tue Mar 31 2020 03:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86797 * 119.99899 * 2 1 4 4 H 1.48505 * 109.47169 * 239.99565 * 3 2 1 5 5 H 1.48495 * 109.47455 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47219 * 120.00068 * 3 2 1 7 7 C 1.39941 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00341 * 197.85483 * 7 2 1 9 9 C 1.41401 * 120.00063 * 17.86223 * 7 2 1 10 10 C 1.40734 * 120.24165 * 24.37906 * 9 7 2 11 11 C 1.37600 * 119.74119 * 180.02562 * 10 9 7 12 12 C 1.38649 * 120.24976 * 359.97438 * 11 10 9 13 13 C 1.38611 * 120.50374 * 359.97438 * 12 11 10 14 14 S 1.76201 * 119.87820 * 180.02562 * 13 12 11 15 15 O 1.42100 * 106.40065 * 336.45998 * 14 13 12 16 16 O 1.42098 * 106.40461 * 203.53830 * 14 13 12 17 17 N 1.65600 * 107.22129 * 89.99737 * 14 13 12 18 18 C 1.47152 * 120.97861 * 89.99866 * 17 14 13 19 19 C 1.53294 * 108.38411 * 129.44735 * 18 17 14 20 20 O 1.42963 * 109.26317 * 52.27264 * 19 18 17 21 21 C 1.42950 * 114.17396 * 297.50695 * 20 19 18 22 22 C 1.47151 * 120.98440 * 269.97981 * 17 14 13 23 23 C 1.37634 * 120.24861 * 0.29563 * 13 12 11 24 24 H 0.97001 * 119.99766 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.12674 * 0.02562 * 10 9 7 26 26 H 1.08001 * 119.87177 * 179.97438 * 11 10 9 27 27 H 1.08001 * 119.75048 * 179.97438 * 12 11 10 28 28 H 1.08999 * 109.68179 * 9.72186 * 18 17 14 29 29 H 1.09001 * 109.68349 * 249.17022 * 18 17 14 30 30 H 1.09002 * 109.51466 * 172.22623 * 19 18 17 31 31 H 1.09005 * 109.51391 * 292.33024 * 19 18 17 32 32 H 1.09003 * 109.47060 * 302.56894 * 21 20 19 33 33 H 1.09006 * 109.55563 * 182.47558 * 21 20 19 34 34 H 1.08997 * 109.67963 * 350.27852 * 22 17 14 35 35 H 1.09009 * 109.68104 * 110.79314 * 22 17 14 36 36 H 1.08004 * 120.13288 * 179.70521 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2873 9 6 1.3521 -2.4072 -0.3745 10 6 0.2207 -2.3626 -1.2103 11 6 -0.4099 -3.5319 -1.5685 12 6 0.0656 -4.7508 -1.1096 13 6 1.1797 -4.8067 -0.2868 14 16 1.7704 -6.3647 0.2862 15 8 0.6658 -7.2570 0.2325 16 8 2.5014 -6.1037 1.4765 17 7 2.8682 -6.9122 -0.8261 18 6 4.2969 -6.5803 -0.7071 19 6 5.1057 -7.8776 -0.8206 20 8 4.7127 -8.5764 -2.0043 21 6 3.3430 -8.9856 -2.0150 22 6 2.4440 -7.7452 -1.9626 23 6 1.8231 -3.6494 0.0887 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1511 -1.4142 -1.5692 26 1 -1.2786 -3.5002 -2.2094 27 1 -0.4358 -5.6637 -1.3954 28 1 4.4859 -6.1132 0.2595 29 1 4.5833 -5.8980 -1.5074 30 1 6.1683 -7.6408 -0.8734 31 1 4.9150 -8.5031 0.0515 32 1 3.1452 -9.6155 -1.1477 33 1 3.1369 -9.5464 -2.9267 34 1 1.4061 -8.0494 -1.8275 35 1 2.5432 -7.1798 -2.8893 36 1 2.6882 -3.6948 0.7337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619472843.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:51 Heat of formation + Delta-G solvation = -97.367100 kcal Electronic energy + Delta-G solvation = -22186.078188 eV Core-core repulsion = 18762.019225 eV Total energy + Delta-G solvation = -3424.058963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.19018 -37.66687 -36.81742 -35.39301 -34.72965 -33.87275 -31.41423 -30.10852 -29.82485 -27.03508 -25.51894 -24.22428 -21.92369 -21.40427 -21.01600 -18.82742 -18.03544 -17.31223 -16.41037 -16.00292 -15.68044 -15.42095 -15.19138 -15.01042 -14.75312 -14.44277 -14.04829 -13.50437 -13.37529 -12.64275 -12.58726 -12.05921 -12.00104 -11.88508 -11.65922 -11.52784 -11.42338 -11.40198 -11.29052 -11.10419 -10.89053 -10.64308 -10.58365 -10.26186 -9.80847 -9.63801 -9.36688 -8.73828 -8.06204 -7.73604 -6.94710 -4.56377 0.87243 2.15792 2.61241 2.97932 2.99789 3.05857 3.33499 3.74976 3.80728 4.19503 4.37918 4.61334 4.81744 4.85435 5.04065 5.18339 5.25875 5.34314 5.40811 5.49724 5.51137 5.77095 5.91845 6.00251 6.09669 6.14734 6.53017 6.61901 6.73436 6.87559 7.01377 7.01969 7.18769 7.34789 7.69251 7.76998 7.91176 8.36714 8.64112 8.68662 10.00865 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.023135 B = 0.004538 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.004378 B = 6168.473863 C = 6637.861220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.082 0.918 9 C 0.092 3.908 10 C -0.117 4.117 11 C -0.121 4.121 12 C -0.148 4.148 13 C -0.631 4.631 14 S 2.686 3.314 15 O -0.972 6.972 16 O -0.967 6.967 17 N -1.004 6.004 18 C 0.084 3.916 19 C 0.051 3.949 20 O -0.381 6.381 21 C 0.051 3.949 22 C 0.084 3.916 23 C -0.128 4.128 24 H 0.284 0.716 25 H 0.125 0.875 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.948 -9.908 -4.443 12.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.490 4.490 8 H 0.100 0.900 9 C 0.088 3.912 10 C -0.137 4.137 11 C -0.140 4.140 12 C -0.169 4.169 13 C -0.723 4.723 14 S 2.785 3.215 15 O -0.962 6.962 16 O -0.958 6.958 17 N -0.841 5.841 18 C -0.042 4.042 19 C -0.027 4.027 20 O -0.299 6.299 21 C -0.027 4.027 22 C -0.041 4.041 23 C -0.149 4.149 24 H 0.096 0.904 25 H 0.143 0.857 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.634 -10.249 -3.790 12.294 hybrid contribution -0.091 1.603 -0.218 1.620 sum 5.543 -8.646 -4.008 11.024 Atomic orbital electron populations 1.69775 1.07694 1.29801 1.34546 1.25944 0.94786 1.01590 0.92015 0.86279 0.80113 0.79749 0.80154 1.18694 1.20209 1.18783 1.19574 0.98378 0.91001 1.40047 0.89953 1.17682 0.91846 0.92013 0.89634 1.21655 0.97534 0.97143 0.97375 1.20813 0.99347 0.93152 1.00720 1.20067 0.97230 0.97434 1.02165 1.29759 1.09121 1.17857 1.15548 1.01813 0.72401 0.74430 0.72890 1.93494 1.51886 1.64361 1.86478 1.93513 1.72569 1.86351 1.43364 1.57895 1.18421 1.65206 1.42621 1.22115 0.79831 0.97920 1.04329 1.22933 0.99234 0.92467 0.88057 1.87919 1.26453 1.75197 1.40346 1.22918 0.81846 0.95186 1.02755 1.22092 1.00016 0.92255 0.89760 1.20728 1.01194 0.91728 1.01235 0.90449 0.85695 0.88330 0.87684 0.87780 0.90355 0.87708 0.92633 0.92658 0.87779 0.87950 0.90465 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.71 10.95 55.55 0.61 -19.11 16 2 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 17.90 29.59 -169.99 -5.03 12.87 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.46 -11.74 9.05 -37.74 -0.34 -12.08 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 9 C 0.09 2.36 5.58 -106.82 -0.60 1.77 16 10 C -0.12 -2.91 8.70 -38.87 -0.34 -3.25 16 11 C -0.12 -2.71 10.02 -39.66 -0.40 -3.11 16 12 C -0.15 -3.22 9.53 -39.29 -0.37 -3.59 16 13 C -0.63 -13.84 5.97 -39.66 -0.24 -14.07 16 14 S 2.69 50.81 5.74 -107.50 -0.62 50.19 16 15 O -0.97 -19.61 15.89 -57.17 -0.91 -20.52 16 16 O -0.97 -20.16 15.88 -57.17 -0.91 -21.07 16 17 N -1.00 -15.09 3.34 -113.06 -0.38 -15.46 16 18 C 0.08 1.09 6.71 -3.53 -0.02 1.07 16 19 C 0.05 0.57 6.98 37.31 0.26 0.83 16 20 O -0.38 -4.64 10.74 -35.23 -0.38 -5.02 16 21 C 0.05 0.55 6.98 37.31 0.26 0.81 16 22 C 0.08 1.06 6.71 -3.54 -0.02 1.04 16 23 C -0.13 -3.05 9.26 -38.87 -0.36 -3.41 16 24 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 25 H 0.13 3.15 6.16 -52.49 -0.32 2.82 16 26 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 27 H 0.11 2.05 7.60 -52.49 -0.40 1.65 16 28 H 0.10 1.37 6.94 -51.93 -0.36 1.01 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.26 6.94 -51.93 -0.36 0.90 16 35 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 36 H 0.11 2.52 7.60 -52.48 -0.40 2.12 16 LS Contribution 312.45 15.07 4.71 4.71 Total: -1.00 -30.57 312.45 -9.51 -40.08 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.35 Total: 5.62 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: -2.26 Total: -32.29 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.23 Total: -34.57 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -2.19 Total: -46.61 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 50.81 SS G_CDS: -0.62 Total: 50.19 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.57 -9.51 -40.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619472843.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.285 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds