Wall clock time and date at job start Tue Mar 31 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86797 * 119.99899 * 2 1 4 4 H 1.48505 * 109.47169 * 239.99565 * 3 2 1 5 5 H 1.48495 * 109.47455 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47219 * 120.00068 * 3 2 1 7 7 C 1.39941 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00341 * 197.85483 * 7 2 1 9 9 C 1.41401 * 120.00063 * 17.86223 * 7 2 1 10 10 C 1.40734 * 120.24165 * 24.37906 * 9 7 2 11 11 C 1.37600 * 119.74119 * 180.02562 * 10 9 7 12 12 C 1.38649 * 120.24976 * 359.97438 * 11 10 9 13 13 C 1.38611 * 120.50374 * 359.97438 * 12 11 10 14 14 S 1.76201 * 119.87820 * 180.02562 * 13 12 11 15 15 O 1.42100 * 106.40065 * 336.45998 * 14 13 12 16 16 O 1.42098 * 106.40461 * 203.53830 * 14 13 12 17 17 N 1.65600 * 107.22129 * 89.99737 * 14 13 12 18 18 C 1.47152 * 120.97861 * 89.99866 * 17 14 13 19 19 C 1.53294 * 108.38411 * 129.44735 * 18 17 14 20 20 O 1.42963 * 109.26317 * 52.27264 * 19 18 17 21 21 C 1.42950 * 114.17396 * 297.50695 * 20 19 18 22 22 C 1.47151 * 120.98440 * 269.97981 * 17 14 13 23 23 C 1.37634 * 120.24861 * 0.29563 * 13 12 11 24 24 H 0.97001 * 119.99766 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.12674 * 0.02562 * 10 9 7 26 26 H 1.08001 * 119.87177 * 179.97438 * 11 10 9 27 27 H 1.08001 * 119.75048 * 179.97438 * 12 11 10 28 28 H 1.08999 * 109.68179 * 9.72186 * 18 17 14 29 29 H 1.09001 * 109.68349 * 249.17022 * 18 17 14 30 30 H 1.09002 * 109.51466 * 172.22623 * 19 18 17 31 31 H 1.09005 * 109.51391 * 292.33024 * 19 18 17 32 32 H 1.09003 * 109.47060 * 302.56894 * 21 20 19 33 33 H 1.09006 * 109.55563 * 182.47558 * 21 20 19 34 34 H 1.08997 * 109.67963 * 350.27852 * 22 17 14 35 35 H 1.09009 * 109.68104 * 110.79314 * 22 17 14 36 36 H 1.08004 * 120.13288 * 179.70521 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2873 9 6 1.3521 -2.4072 -0.3745 10 6 0.2207 -2.3626 -1.2103 11 6 -0.4099 -3.5319 -1.5685 12 6 0.0656 -4.7508 -1.1096 13 6 1.1797 -4.8067 -0.2868 14 16 1.7704 -6.3647 0.2862 15 8 0.6658 -7.2570 0.2325 16 8 2.5014 -6.1037 1.4765 17 7 2.8682 -6.9122 -0.8261 18 6 4.2969 -6.5803 -0.7071 19 6 5.1057 -7.8776 -0.8206 20 8 4.7127 -8.5764 -2.0043 21 6 3.3430 -8.9856 -2.0150 22 6 2.4440 -7.7452 -1.9626 23 6 1.8231 -3.6494 0.0887 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1511 -1.4142 -1.5692 26 1 -1.2786 -3.5002 -2.2094 27 1 -0.4358 -5.6637 -1.3954 28 1 4.4859 -6.1132 0.2595 29 1 4.5833 -5.8980 -1.5074 30 1 6.1683 -7.6408 -0.8734 31 1 4.9150 -8.5031 0.0515 32 1 3.1452 -9.6155 -1.1477 33 1 3.1369 -9.5464 -2.9267 34 1 1.4061 -8.0494 -1.8275 35 1 2.5432 -7.1798 -2.8893 36 1 2.6882 -3.6948 0.7337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619472843.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:50 Heat of formation + Delta-G solvation = -118.196938 kcal Electronic energy + Delta-G solvation = -22186.981437 eV Core-core repulsion = 18762.019225 eV Total energy + Delta-G solvation = -3424.962213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.13601 -39.47044 -38.40614 -36.98839 -35.80989 -35.68815 -32.34384 -31.94273 -31.61787 -28.06058 -27.37128 -25.17286 -23.67942 -22.82425 -22.45384 -20.33996 -19.51471 -18.78990 -17.77239 -17.47607 -16.99960 -16.79634 -16.57079 -16.21038 -15.96406 -15.82063 -15.23776 -15.21798 -15.01647 -14.33719 -13.76219 -13.69830 -13.32634 -13.31288 -13.16636 -13.11620 -13.08802 -12.89233 -12.67051 -12.58974 -12.29644 -12.22536 -11.63451 -11.55008 -11.36875 -11.19991 -11.14525 -9.94517 -9.79041 -9.59224 -8.74875 -6.47552 -0.62679 0.37298 0.81908 1.36703 1.46141 1.49797 1.94919 2.16708 2.53313 2.70297 2.92553 3.27333 3.47245 3.75076 3.86059 4.17920 4.22967 4.26204 4.28885 4.40111 4.43676 4.67712 4.68667 4.80930 4.82952 4.87130 4.98556 5.02253 5.09830 5.17363 5.37681 5.49759 5.54493 5.85606 5.90980 6.07522 6.16086 6.49719 6.77500 6.81925 8.23142 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.023135 B = 0.004538 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.004378 B = 6168.473863 C = 6637.861220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.036 3.964 3 Si 0.986 3.014 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.497 4.497 8 H 0.082 0.918 9 C 0.062 3.938 10 C -0.142 4.142 11 C -0.123 4.123 12 C -0.150 4.150 13 C -0.640 4.640 14 S 2.713 3.287 15 O -0.982 6.982 16 O -0.989 6.989 17 N -0.998 5.998 18 C 0.074 3.926 19 C 0.054 3.946 20 O -0.390 6.390 21 C 0.051 3.949 22 C 0.074 3.926 23 C -0.147 4.147 24 H 0.292 0.708 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.132 0.868 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.134 0.866 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.731 -10.922 -5.311 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.526 4.526 8 H 0.100 0.900 9 C 0.059 3.941 10 C -0.162 4.162 11 C -0.142 4.142 12 C -0.171 4.171 13 C -0.729 4.729 14 S 2.808 3.192 15 O -0.972 6.972 16 O -0.979 6.979 17 N -0.838 5.838 18 C -0.051 4.051 19 C -0.025 4.025 20 O -0.308 6.308 21 C -0.027 4.027 22 C -0.050 4.050 23 C -0.168 4.168 24 H 0.103 0.897 25 H 0.132 0.868 26 H 0.145 0.855 27 H 0.149 0.851 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.150 0.850 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.152 0.848 34 H 0.123 0.877 35 H 0.104 0.896 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.389 -11.245 -4.667 13.749 hybrid contribution -0.344 1.756 0.016 1.789 sum 6.045 -9.489 -4.651 12.174 Atomic orbital electron populations 1.69821 1.09092 1.31127 1.34941 1.26802 0.95526 1.04696 0.90933 0.85188 0.78769 0.75218 0.80213 1.18160 1.19084 1.18401 1.19858 0.98730 0.92194 1.41854 0.89984 1.18062 0.92685 0.93018 0.90357 1.21667 0.98292 0.97665 0.98531 1.21155 0.99820 0.92676 1.00562 1.20463 0.96982 0.98198 1.01448 1.30332 1.08840 1.19233 1.14476 1.01045 0.72294 0.73064 0.72825 1.93472 1.53080 1.63813 1.86848 1.93480 1.72917 1.86413 1.45086 1.57651 1.18524 1.64739 1.42897 1.22380 0.78771 0.99572 1.04355 1.23045 1.00243 0.91115 0.88055 1.87916 1.27067 1.75123 1.40739 1.23081 0.80796 0.94276 1.04531 1.22423 1.00811 0.92879 0.88928 1.20821 1.01852 0.92128 1.02008 0.89695 0.86830 0.85477 0.85055 0.88319 0.89797 0.85042 0.92223 0.92280 0.84806 0.87663 0.89565 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.90 10.95 21.83 0.24 -41.66 16 2 C 0.04 1.76 5.14 85.26 0.44 2.20 16 3 Si 0.99 36.87 29.59 68.60 2.03 38.90 16 4 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 5 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 6 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.50 -26.22 9.05 23.46 0.21 -26.01 16 8 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 9 C 0.06 3.31 5.58 -21.29 -0.12 3.19 16 10 C -0.14 -7.24 8.70 22.73 0.20 -7.04 16 11 C -0.12 -5.50 10.02 22.22 0.22 -5.28 16 12 C -0.15 -6.42 9.53 22.46 0.21 -6.20 16 13 C -0.64 -28.08 5.97 22.22 0.13 -27.95 16 14 S 2.71 100.44 5.74 -56.49 -0.32 100.12 16 15 O -0.98 -38.19 15.89 -128.00 -2.03 -40.22 16 16 O -0.99 -41.03 15.88 -128.00 -2.03 -43.06 16 17 N -1.00 -28.45 3.34 -511.63 -1.71 -30.15 16 18 C 0.07 1.83 6.71 86.35 0.58 2.41 16 19 C 0.05 1.05 6.98 72.08 0.50 1.55 16 20 O -0.39 -8.34 10.74 -148.98 -1.60 -9.94 16 21 C 0.05 0.95 6.98 72.08 0.50 1.45 16 22 C 0.07 1.69 6.71 86.35 0.58 2.27 16 23 C -0.15 -7.24 9.26 22.73 0.21 -7.03 16 24 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 25 H 0.11 5.94 6.16 -2.91 -0.02 5.93 16 26 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 27 H 0.13 4.84 7.60 -2.91 -0.02 4.82 16 28 H 0.10 2.54 6.94 -2.39 -0.02 2.52 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.11 2.34 6.94 -2.39 -0.02 2.32 16 35 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.11 5.25 7.60 -2.91 -0.02 5.23 16 Total: -1.00 -66.21 312.45 -0.66 -66.88 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 1.09 Total: 25.57 kcal Atomic # 6 Polarization: -70.11 SS G_CDS: 3.68 Total: -66.43 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -1.47 Total: -71.81 kcal Atomic # 8 Polarization: -87.56 SS G_CDS: -5.67 Total: -93.22 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Atomic # 16 Polarization: 100.44 SS G_CDS: -0.32 Total: 100.12 kcal Total: -66.21 -0.66 -66.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619472843.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.319 kcal (2) G-P(sol) polarization free energy of solvation -66.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds