Wall clock time and date at job start Tue Mar 31 2020 03:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 119.99678 * 2 1 4 4 H 1.48504 * 109.46776 * 244.99216 * 3 2 1 5 5 H 1.48496 * 109.47611 * 4.99424 * 3 2 1 6 6 H 1.48504 * 109.47201 * 124.99646 * 3 2 1 7 7 C 1.37880 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99478 * 167.78984 * 7 2 1 9 9 C 1.50697 * 119.99997 * 347.78823 * 7 2 1 10 10 C 1.52997 * 115.56376 * 320.84007 * 9 7 2 11 11 N 1.46504 * 109.47105 * 268.69672 * 10 9 7 12 12 C 1.39007 * 119.99877 * 185.11221 * 11 10 9 13 13 N 1.32419 * 119.70853 * 355.50068 * 12 11 10 14 14 C 1.31941 * 121.62504 * 179.75600 * 13 12 11 15 15 C 1.38065 * 120.85363 * 0.52045 * 14 13 12 16 16 C 1.38838 * 119.32659 * 359.75116 * 15 14 13 17 17 C 1.38340 * 118.50844 * 359.97438 * 16 15 14 18 18 S 1.76198 * 120.45202 * 180.02562 * 17 16 15 19 19 N 1.65602 * 107.21565 * 116.56648 * 18 17 16 20 20 O 1.42097 * 106.40147 * 230.10527 * 18 17 16 21 21 O 1.42097 * 106.40509 * 3.03027 * 18 17 16 22 22 C 1.53002 * 117.49491 * 175.15277 * 9 7 2 23 23 C 1.52998 * 60.03203 * 252.49869 * 22 9 7 24 24 H 0.97000 * 120.00414 * 5.03027 * 1 2 3 25 25 H 1.08990 * 109.47340 * 28.69634 * 10 9 7 26 26 H 1.09003 * 109.47358 * 148.69940 * 10 9 7 27 27 H 0.97000 * 119.99747 * 5.11629 * 11 10 9 28 28 H 1.08002 * 119.57126 * 180.25154 * 14 13 12 29 29 H 1.08004 * 120.33838 * 179.72370 * 15 14 13 30 30 H 1.08003 * 120.74975 * 179.97438 * 16 15 14 31 31 H 0.97008 * 119.99612 * 154.95838 * 19 18 17 32 32 H 0.96995 * 120.00360 * 334.96638 * 19 18 17 33 33 H 1.08995 * 117.50415 * 359.97438 * 22 9 7 34 34 H 1.09001 * 117.50177 * 144.99985 * 22 9 7 35 35 H 1.08997 * 117.50248 * 107.49795 * 23 22 9 36 36 H 1.09005 * 117.50218 * 252.52777 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.0091 1.7504 -1.2689 5 1 1.2887 2.7438 0.1219 6 1 3.1919 1.6450 1.1469 7 6 2.0045 -1.1941 0.0005 8 1 3.0662 -1.2047 -0.1973 9 6 1.2766 -2.4843 0.2772 10 6 0.2010 -2.4157 1.3631 11 7 0.7943 -2.7516 2.6599 12 6 -0.0130 -2.8603 3.7863 13 7 -1.3026 -2.5721 3.6997 14 6 -2.1042 -2.6667 4.7434 15 6 -1.6203 -3.0625 5.9743 16 6 -0.2728 -3.3687 6.1088 17 6 0.5420 -3.2657 4.9956 18 16 2.2596 -3.6425 5.1081 19 7 2.5407 -4.9463 4.1266 20 8 2.9500 -2.5455 4.5257 21 8 2.4868 -4.0857 6.4389 22 6 2.0723 -3.7851 0.1520 23 6 1.0277 -3.4234 -0.9057 24 1 -0.4851 0.8368 -0.0737 25 1 -0.2117 -1.4078 1.4026 26 1 -0.5938 -3.1251 1.1326 27 1 1.7504 -2.8981 2.7324 28 1 -3.1517 -2.4272 4.6343 29 1 -2.2831 -3.1329 6.8242 30 1 0.1303 -3.6804 7.0611 31 1 3.4256 -5.0938 3.7576 32 1 1.8205 -5.5625 3.9206 33 1 3.1221 -3.7078 -0.1308 34 1 1.8298 -4.5920 0.8436 35 1 1.3903 -3.1079 -1.8840 36 1 0.0977 -3.9919 -0.9098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619527704.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:26 Heat of formation + Delta-G solvation = -5.734132 kcal Electronic energy + Delta-G solvation = -22527.670484 eV Core-core repulsion = 19139.877775 eV Total energy + Delta-G solvation = -3387.792708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.00878 -37.41065 -36.90930 -35.70371 -34.48614 -33.11591 -32.38603 -32.26744 -29.74918 -26.07477 -25.21381 -23.89540 -22.18554 -21.21089 -19.56192 -19.25390 -18.28126 -17.58960 -17.12819 -16.68854 -16.09454 -15.92892 -15.00320 -14.86146 -14.66008 -14.31007 -14.03635 -13.54787 -13.20750 -12.79590 -12.65315 -12.07487 -12.00171 -11.95131 -11.80662 -11.67002 -11.09515 -10.98738 -10.93277 -10.57832 -10.45124 -10.37282 -10.06360 -9.92266 -9.52035 -9.21548 -9.06291 -8.88806 -8.24198 -7.48606 -6.12021 -4.17235 0.53644 0.97671 1.64599 3.22650 3.27265 3.33382 3.39164 3.55207 3.67253 4.00970 4.33008 4.57656 4.72252 4.91558 4.95214 5.30526 5.38963 5.49622 5.62604 5.86429 5.91931 6.00893 6.16179 6.20958 6.40978 6.51900 6.56718 6.64973 6.86230 6.93940 7.05127 7.20761 7.54654 7.57770 7.74872 7.94520 8.30222 8.44269 8.79257 9.43080 10.88735 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.015370 B = 0.006013 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.246026 B = 4655.087148 C = 4991.889105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.070 3.930 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.492 4.492 8 H 0.064 0.936 9 C 0.037 3.963 10 C 0.144 3.856 11 N -0.685 5.685 12 C 0.491 3.509 13 N -0.539 5.539 14 C 0.210 3.790 15 C -0.276 4.276 16 C 0.066 3.934 17 C -0.814 4.814 18 S 2.703 3.297 19 N -1.251 6.251 20 O -0.956 6.956 21 O -0.973 6.973 22 C -0.212 4.212 23 C -0.190 4.190 24 H 0.266 0.734 25 H 0.130 0.870 26 H 0.043 0.957 27 H 0.408 0.592 28 H 0.159 0.841 29 H 0.135 0.865 30 H 0.146 0.854 31 H 0.421 0.579 32 H 0.417 0.583 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 -9.455 9.507 13.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.133 4.133 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.529 4.529 8 H 0.082 0.918 9 C 0.036 3.964 10 C 0.023 3.977 11 N -0.310 5.310 12 C 0.248 3.752 13 N -0.257 5.257 14 C 0.046 3.954 15 C -0.301 4.301 16 C 0.039 3.961 17 C -0.912 4.912 18 S 2.792 3.208 19 N -0.924 5.924 20 O -0.945 6.945 21 O -0.962 6.962 22 C -0.250 4.250 23 C -0.228 4.228 24 H 0.076 0.924 25 H 0.147 0.853 26 H 0.061 0.939 27 H 0.248 0.752 28 H 0.176 0.824 29 H 0.153 0.847 30 H 0.163 0.837 31 H 0.251 0.749 32 H 0.243 0.757 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.836 -8.362 9.084 12.482 hybrid contribution 0.379 0.091 0.201 0.438 sum -1.457 -8.271 9.284 12.519 Atomic orbital electron populations 1.69725 1.05967 1.27372 1.48149 1.24981 0.94891 0.99334 0.94083 0.86607 0.79852 0.82537 0.78895 1.20202 1.21092 1.19677 1.20521 0.94639 0.89145 1.48624 0.91826 1.19206 0.94839 0.89208 0.93123 1.21603 0.93901 1.04288 0.77937 1.45804 1.09347 1.68828 1.07054 1.17856 0.88637 0.84101 0.84628 1.67494 1.03287 1.22094 1.32806 1.22828 0.98836 0.86313 0.87444 1.21762 0.96351 1.12187 0.99767 1.20998 0.92873 0.86207 0.96021 1.30438 1.26434 1.32916 1.01410 1.01381 0.73151 0.72994 0.73273 1.53153 1.21479 1.46254 1.71554 1.93658 1.71980 1.51424 1.77478 1.93549 1.84365 1.81755 1.36572 1.22892 0.96814 1.01159 1.04102 1.22974 0.98057 1.06280 0.95502 0.92384 0.85307 0.93905 0.75228 0.82399 0.84713 0.83651 0.74905 0.75661 0.90243 0.91336 0.90012 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.92 10.89 55.43 0.60 -23.32 16 2 C 0.07 1.89 5.14 -17.82 -0.09 1.80 16 3 Si 0.89 21.16 29.56 -169.99 -5.02 16.13 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.49 -13.11 9.01 -34.44 -0.31 -13.42 16 8 H 0.06 1.69 7.84 -52.49 -0.41 1.28 16 9 C 0.04 0.88 1.84 -155.62 -0.29 0.59 16 10 C 0.14 3.32 5.45 -4.04 -0.02 3.30 16 11 N -0.69 -13.95 5.41 -60.43 -0.33 -14.28 16 12 C 0.49 9.14 7.45 -155.01 -1.15 7.99 16 13 N -0.54 -9.86 9.57 -12.44 -0.12 -9.97 16 14 C 0.21 2.93 11.17 -17.57 -0.20 2.73 16 15 C -0.28 -3.37 10.10 -39.42 -0.40 -3.77 16 16 C 0.07 0.89 9.66 -39.32 -0.38 0.51 16 17 C -0.81 -12.88 5.94 -39.22 -0.23 -13.12 16 18 S 2.70 40.39 5.54 -107.50 -0.60 39.79 16 19 N -1.25 -13.56 9.18 60.35 0.55 -13.00 16 20 O -0.96 -18.16 16.36 -57.17 -0.94 -19.10 16 21 O -0.97 -15.70 17.05 -57.17 -0.98 -16.68 16 22 C -0.21 -4.25 9.46 -26.73 -0.25 -4.50 16 23 C -0.19 -4.08 9.89 -26.69 -0.26 -4.35 16 24 H 0.27 6.99 8.32 -40.82 -0.34 6.65 16 25 H 0.13 3.41 5.25 -51.93 -0.27 3.14 16 26 H 0.04 0.96 7.87 -51.93 -0.41 0.55 16 27 H 0.41 8.10 5.26 -40.82 -0.21 7.88 16 28 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 30 H 0.15 1.63 7.44 -52.48 -0.39 1.24 16 31 H 0.42 3.78 8.96 -34.47 -0.31 3.47 16 32 H 0.42 3.66 8.96 -34.47 -0.31 3.35 16 33 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 36 H 0.07 1.34 8.03 -51.93 -0.42 0.93 16 LS Contribution 318.48 15.07 4.80 4.80 Total: -1.00 -32.97 318.48 -9.59 -42.56 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -3.98 Total: 15.30 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -3.59 Total: -22.23 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 0.71 Total: -60.58 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -1.91 Total: -35.78 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 40.39 SS G_CDS: -0.60 Total: 39.79 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.97 -9.59 -42.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619527704.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.828 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds