Wall clock time and date at job start Tue Mar 31 2020 03:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86803 * 120.00120 * 2 1 4 4 H 1.48495 * 109.47450 * 270.00395 * 3 2 1 5 5 H 1.48500 * 109.47057 * 150.00277 * 3 2 1 6 6 H 1.48500 * 109.46808 * 30.00640 * 3 2 1 7 7 C 1.39943 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00055 * 153.85675 * 7 2 1 9 9 C 1.41395 * 119.99902 * 333.85714 * 7 2 1 10 10 C 1.40731 * 120.24744 * 328.70085 * 9 7 2 11 11 C 1.37587 * 119.74913 * 180.02562 * 10 9 7 12 12 C 1.38665 * 120.25054 * 359.97438 * 11 10 9 13 13 C 1.38612 * 120.49738 * 359.97438 * 12 11 10 14 14 C 1.37644 * 120.25023 * 359.76048 * 13 12 11 15 15 S 1.76198 * 120.13017 * 180.25249 * 14 13 12 16 16 O 1.42100 * 106.40304 * 227.35826 * 15 14 13 17 17 O 1.42101 * 106.40257 * 0.28319 * 15 14 13 18 18 N 1.65601 * 107.21425 * 113.81816 * 15 14 13 19 19 C 1.47025 * 125.64978 * 94.52180 * 18 15 14 20 20 C 1.54320 * 107.27396 * 181.02007 * 19 18 15 21 21 C 1.55150 * 102.94122 * 22.19065 * 20 19 18 22 22 H 1.09002 * 111.00393 * 82.57541 * 21 20 19 23 23 O 1.42903 * 111.00566 * 206.38426 * 21 20 19 24 24 C 1.47425 * 125.64717 * 274.20843 * 18 15 14 25 25 H 0.97000 * 120.00390 * 174.20547 * 1 2 3 26 26 H 1.08005 * 120.12033 * 359.97438 * 10 9 7 27 27 H 1.07995 * 119.87965 * 179.97438 * 11 10 9 28 28 H 1.07994 * 119.74984 * 180.02562 * 12 11 10 29 29 H 1.07997 * 119.87404 * 180.02562 * 13 12 11 30 30 H 1.09000 * 109.87756 * 300.43982 * 19 18 15 31 31 H 1.09004 * 109.88137 * 61.60152 * 19 18 15 32 32 H 1.09000 * 110.72220 * 140.55727 * 20 19 18 33 33 H 1.09002 * 110.72154 * 263.82874 * 20 19 18 34 34 H 0.96694 * 114.00091 * 298.54855 * 23 21 20 35 35 H 1.09004 * 110.36939 * 274.74406 * 24 18 15 36 36 H 1.08993 * 110.36830 * 37.07463 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 3.5398 1.4401 0.7000 6 1 1.4397 2.6526 0.7002 7 6 2.0079 -1.2120 -0.0005 8 1 3.0050 -1.2597 -0.4127 9 6 1.4093 -2.3741 0.5385 10 6 0.4966 -2.2719 1.6048 11 6 -0.0793 -3.4095 2.1218 12 6 0.2360 -4.6531 1.5958 13 6 1.1327 -4.7656 0.5448 14 6 1.7169 -3.6406 0.0083 15 16 2.8513 -3.7867 -1.3319 16 8 3.9759 -2.9862 -0.9948 17 8 2.9450 -5.1731 -1.6290 18 7 2.1473 -3.0727 -2.6499 19 6 2.3501 -1.6819 -3.0815 20 6 1.4765 -1.4588 -4.3339 21 6 0.3974 -2.5662 -4.2066 22 1 -0.4065 -2.2536 -3.5401 23 8 -0.1169 -2.9301 -5.4893 24 6 1.2185 -3.7282 -3.5885 25 1 -0.4851 -0.8357 -0.0848 26 1 0.2500 -1.3043 2.0163 27 1 -0.7797 -3.3336 2.9404 28 1 -0.2212 -5.5407 2.0075 29 1 1.3707 -5.7392 0.1426 30 1 2.0432 -0.9994 -2.2889 31 1 3.3995 -1.5195 -3.3277 32 1 1.0186 -0.4698 -4.3135 33 1 2.0632 -1.5946 -5.2425 34 1 -0.5521 -2.2053 -5.9586 35 1 1.7730 -4.2580 -4.3632 36 1 0.5612 -4.4145 -3.0546 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619572805.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:21 Heat of formation + Delta-G solvation = -110.111120 kcal Electronic energy + Delta-G solvation = -23185.954685 eV Core-core repulsion = 19761.343100 eV Total energy + Delta-G solvation = -3424.611585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.57669 -37.86727 -36.41074 -35.43567 -34.97700 -34.14485 -30.25831 -29.81365 -29.56478 -28.17318 -25.38349 -22.20305 -21.75269 -21.28969 -21.04212 -18.51169 -18.25351 -17.37109 -17.02689 -16.22402 -15.30235 -15.02128 -14.62750 -14.27886 -14.14241 -13.93333 -13.57276 -13.43916 -12.96303 -12.78255 -12.63671 -12.34720 -11.82579 -11.70309 -11.36906 -11.29492 -11.25146 -11.14694 -11.03968 -10.99503 -10.61846 -10.53689 -10.47738 -9.93470 -9.86193 -9.41321 -9.21667 -8.44360 -8.24766 -7.87519 -7.54181 -4.91150 1.34429 2.17096 2.58781 3.01100 3.10321 3.26130 3.70412 3.78515 4.20167 4.27685 4.64580 4.77506 4.85781 5.10388 5.23920 5.33932 5.57118 5.75830 5.84618 5.87119 5.94985 6.00402 6.16185 6.19541 6.24193 6.40969 6.55338 6.64565 6.82093 6.95530 7.10173 7.23703 7.34766 7.52952 7.62396 7.64691 7.77000 7.93261 8.33751 8.51916 9.69146 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.011476 B = 0.009602 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.333809 B = 2915.315515 C = 4007.134460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.046 3.954 3 Si 1.056 2.944 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.117 0.883 9 C 0.173 3.827 10 C -0.207 4.207 11 C -0.056 4.056 12 C -0.259 4.259 13 C 0.011 3.989 14 C -0.781 4.781 15 S 2.722 3.278 16 O -0.966 6.966 17 O -0.991 6.991 18 N -1.004 6.004 19 C 0.115 3.885 20 C -0.161 4.161 21 C 0.092 3.908 22 H 0.077 0.923 23 O -0.563 6.563 24 C 0.137 3.863 25 H 0.301 0.699 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.379 0.621 35 H 0.072 0.928 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.296 1.249 -6.619 6.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.179 4.179 3 Si 0.878 3.122 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.196 1.196 7 C -0.560 4.560 8 H 0.134 0.866 9 C 0.168 3.832 10 C -0.227 4.227 11 C -0.075 4.075 12 C -0.280 4.280 13 C -0.009 4.009 14 C -0.876 4.876 15 S 2.821 3.179 16 O -0.957 6.957 17 O -0.982 6.982 18 N -0.841 5.841 19 C -0.010 4.010 20 C -0.200 4.200 21 C 0.031 3.969 22 H 0.095 0.905 23 O -0.368 6.368 24 C 0.011 3.989 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.226 0.774 35 H 0.090 0.910 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.409 1.880 -6.360 6.644 hybrid contribution -0.921 -0.940 0.402 1.376 sum -1.330 0.940 -5.958 6.177 Atomic orbital electron populations 1.70453 1.08244 1.34497 1.26288 1.27116 0.95429 1.04432 0.90913 0.83770 0.76320 0.73304 0.78777 1.19474 1.19220 1.19572 1.21436 1.05068 0.94006 1.35443 0.86573 1.17014 0.87667 0.90248 0.88225 1.21327 1.04205 0.97238 0.99882 1.20855 0.96407 0.93287 0.96972 1.20483 1.06970 0.96372 1.04155 1.20342 0.91513 0.95814 0.93219 1.29898 1.31971 1.00288 1.25447 1.00505 0.73758 0.71504 0.72089 1.93474 1.48909 1.70117 1.83217 1.93451 1.87133 1.32690 1.84946 1.58542 1.61882 1.21414 1.42228 1.21909 0.99191 0.82977 0.96954 1.23324 0.98135 0.99673 0.98858 1.23051 0.94809 0.94449 0.84547 0.90503 1.86428 1.78102 1.40714 1.31531 1.21597 0.91107 0.93901 0.92273 0.88616 0.87377 0.88564 0.88401 0.87222 0.88554 0.91827 0.90157 0.90363 0.77389 0.90973 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.87 12.56 55.55 0.70 -17.17 16 2 C 0.05 1.03 4.36 -17.34 -0.08 0.95 16 3 Si 1.06 19.59 30.01 -169.99 -5.10 14.49 16 4 H -0.27 -4.60 7.11 56.52 0.40 -4.20 16 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 7 C -0.53 -12.72 5.87 -37.74 -0.22 -12.94 16 8 H 0.12 2.85 5.11 -52.49 -0.27 2.58 16 9 C 0.17 4.25 5.14 -106.82 -0.55 3.70 16 10 C -0.21 -4.89 8.09 -38.88 -0.31 -5.21 16 11 C -0.06 -1.22 10.02 -39.66 -0.40 -1.62 16 12 C -0.26 -5.54 10.05 -39.29 -0.39 -5.93 16 13 C 0.01 0.25 9.54 -39.66 -0.38 -0.13 16 14 C -0.78 -18.44 5.97 -38.87 -0.23 -18.68 16 15 S 2.72 60.51 5.32 -107.50 -0.57 59.94 16 16 O -0.97 -23.47 15.10 -57.17 -0.86 -24.33 16 17 O -0.99 -22.97 16.61 -57.17 -0.95 -23.92 16 18 N -1.00 -19.08 3.68 -111.29 -0.41 -19.49 16 19 C 0.11 1.98 6.47 -3.06 -0.02 1.96 16 20 C -0.16 -2.18 6.68 -24.90 -0.17 -2.35 16 21 C 0.09 1.32 4.44 -24.46 -0.11 1.21 16 22 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 23 O -0.56 -7.12 13.47 -35.23 -0.47 -7.59 16 24 C 0.14 2.30 6.77 -2.41 -0.02 2.28 16 25 H 0.30 7.15 7.02 -40.82 -0.29 6.86 16 26 H 0.11 2.56 6.98 -52.48 -0.37 2.20 16 27 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 28 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.11 2.28 7.32 -52.49 -0.38 1.90 16 30 H 0.10 1.83 5.07 -51.93 -0.26 1.57 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.38 3.04 9.11 45.56 0.42 3.46 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 307.06 15.07 4.63 4.63 Total: -1.00 -28.98 307.06 -9.25 -38.23 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -3.33 Total: 11.96 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: -2.88 Total: -36.75 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.29 Total: -36.65 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -2.29 Total: -55.84 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.10 Total: 14.49 kcal Atomic # 16 Polarization: 60.51 SS G_CDS: -0.57 Total: 59.94 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.98 -9.25 -38.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572805.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.882 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds