Wall clock time and date at job start Tue Mar 31 2020 03:15:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.36864 * 119.99862 * 2 1
4 4 H 1.08006 * 119.99937 * 137.58640 * 3 2 1
5 5 C 1.39047 * 120.00381 * 317.58801 * 3 2 1
6 6 N 1.31360 * 120.00260 * 44.64018 * 5 3 2
7 7 Si 1.86807 * 119.99937 * 224.64837 * 5 3 2
8 8 H 1.48500 * 109.47225 * 359.97438 * 7 5 3
9 9 H 1.48498 * 109.47241 * 119.99792 * 7 5 3
10 10 H 1.48502 * 109.46820 * 239.99568 * 7 5 3
11 11 C 1.34780 * 119.99865 * 180.02562 * 2 1 3
12 12 O 1.21594 * 119.99568 * 187.78509 * 11 2 1
13 13 C 1.47726 * 119.99959 * 7.77877 * 11 2 1
14 14 C 1.39650 * 120.14298 * 138.99493 * 13 11 2
15 15 C 1.37938 * 119.84024 * 180.29951 * 14 13 11
16 16 C 1.38377 * 120.15410 * 359.42492 * 15 14 13
17 17 C 1.50697 * 119.85217 * 180.28006 * 16 15 14
18 18 S 1.81405 * 109.47158 * 270.32483 * 17 16 15
19 19 C 1.81402 * 101.92095 * 179.97438 * 18 17 16
20 20 O 1.42102 * 108.57349 * 294.48438 * 18 17 16
21 21 O 1.42098 * 108.58163 * 65.50747 * 18 17 16
22 22 C 1.38376 * 120.30479 * 0.60049 * 16 15 14
23 23 C 1.37942 * 120.14740 * 359.67985 * 22 16 15
24 24 H 1.09001 * 109.47138 * 278.65321 * 1 2 3
25 25 H 1.08994 * 109.47178 * 38.65922 * 1 2 3
26 26 H 1.09007 * 109.47183 * 158.65529 * 1 2 3
27 27 H 0.97001 * 120.00420 * 180.02562 * 6 5 3
28 28 H 1.07994 * 120.08147 * 0.02562 * 14 13 11
29 29 H 1.07998 * 119.92397 * 179.70236 * 15 14 13
30 30 H 1.09009 * 109.47060 * 30.31548 * 17 16 15
31 31 H 1.08994 * 109.47457 * 150.32041 * 17 16 15
32 32 H 1.08994 * 109.47036 * 59.99967 * 19 18 17
33 33 H 1.09004 * 109.46866 * 179.97438 * 19 18 17
34 34 H 1.09000 * 109.46817 * 299.98997 * 19 18 17
35 35 H 1.07998 * 119.92822 * 179.69772 * 22 16 15
36 36 H 1.08006 * 120.07482 * 179.97438 * 23 22 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1493 1.1853 0.0000
4 1 3.0174 1.3077 0.6309
5 6 1.7270 2.2320 -0.8121
6 7 0.4514 2.5383 -0.8786
7 14 2.9738 3.2024 -1.8089
8 1 4.3347 2.6629 -1.5596
9 1 2.6514 3.0854 -3.2537
10 1 2.9263 4.6307 -1.4052
11 6 2.1389 -1.1672 -0.0005
12 8 3.3464 -1.1721 0.1421
13 6 1.4104 -2.4406 -0.1742
14 6 1.9431 -3.4489 -0.9803
15 6 1.2546 -4.6331 -1.1431
16 6 0.0447 -4.8277 -0.5005
17 6 -0.6987 -6.1264 -0.6781
18 16 -1.8119 -5.9959 -2.1045
19 6 -2.5848 -7.6368 -2.1281
20 8 -2.8108 -5.0285 -1.8120
21 8 -1.0267 -5.8488 -3.2797
22 6 -0.4891 -3.8326 0.2993
23 6 0.1859 -2.6413 0.4663
24 1 -0.3633 0.1546 1.0160
25 1 -0.3633 0.8024 -0.6419
26 1 -0.3634 -0.9572 -0.3741
27 1 0.1567 3.2682 -1.4455
28 1 2.8896 -3.3003 -1.4785
29 1 1.6630 -5.4119 -1.7700
30 1 0.0147 -6.9333 -0.8468
31 1 -1.2807 -6.3376 0.2189
32 1 -3.1113 -7.8039 -1.1885
33 1 -3.2920 -7.6934 -2.9556
34 1 -1.8157 -8.3988 -2.2543
35 1 -1.4363 -3.9891 0.7941
36 1 -0.2320 -1.8652 1.0905
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000701288198.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:15:38
Heat of formation + Delta-G solvation = -49.635409 kcal
Electronic energy + Delta-G solvation = -21607.182072 eV
Core-core repulsion = 18185.192910 eV
Total energy + Delta-G solvation = -3421.989162 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 297.087 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-39.63549 -37.71311 -37.10593 -36.12019 -34.72149 -33.06879 -31.86413 -30.69208
-29.98299 -27.79319 -26.25605 -24.57152 -22.39551 -21.94354 -19.47767 -19.04194
-17.18555 -16.85931 -16.59282 -16.39971 -16.15511 -15.36827 -15.06973 -14.74296
-14.31425 -13.90052 -13.79059 -13.61959 -13.54260 -13.29643 -12.79119 -12.65936
-12.59852 -12.18943 -12.11940 -12.09174 -11.65447 -11.54456 -11.30359 -11.19059
-10.90594 -10.87499 -10.63604 -10.33145 -10.18685 -8.67845 -8.65667 -8.54902
-8.27843 -7.67803 -6.68153 -3.89030 -0.32796 1.33311 1.64803 2.53959
3.13455 3.29567 3.39400 3.44527 3.68965 3.74912 4.06688 4.30927
4.32497 4.37599 4.45741 4.63109 4.75926 4.95350 5.14115 5.22341
5.23282 5.27981 5.62428 5.67542 5.81111 6.09843 6.25146 6.37884
6.56575 6.59816 6.67070 6.84337 7.13530 7.18647 7.59833 8.26681
8.48281 9.09841 9.29908 9.96555 10.34595
Molecular weight = 297.09amu
Principal moments of inertia in cm(-1)
A = 0.025771 B = 0.003763 C = 0.003622
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1086.219950 B = 7439.486747 C = 7728.725903
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.039 3.961
2 N -0.430 5.430
3 C -0.350 4.350
4 H 0.098 0.902
5 C 0.077 3.923
6 N -0.819 5.819
7 Si 0.884 3.116
8 H -0.261 1.261
9 H -0.276 1.276
10 H -0.282 1.282
11 C 0.480 3.520
12 O -0.579 6.579
13 C -0.078 4.078
14 C -0.081 4.081
15 C -0.107 4.107
16 C -0.104 4.104
17 C -0.554 4.554
18 S 2.412 3.588
19 C -0.662 4.662
20 O -0.931 6.931
21 O -0.932 6.932
22 C -0.108 4.108
23 C -0.104 4.104
24 H 0.037 0.963
25 H 0.116 0.884
26 H 0.051 0.949
27 H 0.274 0.726
28 H 0.133 0.867
29 H 0.129 0.871
30 H 0.138 0.862
31 H 0.139 0.861
32 H 0.127 0.873
33 H 0.128 0.872
34 H 0.127 0.873
35 H 0.129 0.871
36 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.538 -19.203 -0.622 21.025
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.104 4.104
2 N -0.147 5.147
3 C -0.475 4.475
4 H 0.116 0.884
5 C -0.133 4.133
6 N -0.451 5.451
7 Si 0.708 3.292
8 H -0.184 1.184
9 H -0.202 1.202
10 H -0.208 1.208
11 C 0.269 3.731
12 O -0.465 6.465
13 C -0.082 4.082
14 C -0.100 4.100
15 C -0.126 4.126
16 C -0.106 4.106
17 C -0.682 4.682
18 S 2.595 3.405
19 C -0.810 4.810
20 O -0.928 6.928
21 O -0.929 6.929
22 C -0.127 4.127
23 C -0.122 4.122
24 H 0.056 0.944
25 H 0.134 0.866
26 H 0.070 0.930
27 H 0.084 0.916
28 H 0.151 0.849
29 H 0.147 0.853
30 H 0.157 0.843
31 H 0.157 0.843
32 H 0.145 0.855
33 H 0.146 0.854
34 H 0.145 0.855
35 H 0.147 0.853
36 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -8.308 -18.335 -1.200 20.165
hybrid contribution 0.361 -0.276 0.082 0.461
sum -7.948 -18.611 -1.119 20.268
Atomic orbital electron populations
1.22984 0.82410 1.03124 1.01833 1.43341 1.05080 1.04625 1.61669
1.19113 1.12439 0.90114 1.25826 0.88425 1.25536 0.95658 0.96776
0.95359 1.70035 1.16509 1.25999 1.32568 0.86629 0.83680 0.78417
0.80504 1.18449 1.20160 1.20804 1.18046 0.87113 0.83109 0.84820
1.90617 1.13989 1.86655 1.55232 1.20526 0.94840 0.95785 0.97043
1.21165 0.99745 0.91894 0.97168 1.20964 0.94233 0.97985 0.99420
1.18827 0.96566 0.93112 1.02116 1.29237 1.14755 1.03754 1.20451
1.08374 0.76969 0.77709 0.77496 1.30351 1.14280 1.24846 1.11559
1.93610 1.58080 1.56040 1.85078 1.93605 1.69998 1.85087 1.44246
1.20979 0.99981 0.93121 0.98649 1.21689 0.94075 0.97030 0.99447
0.94446 0.86618 0.93047 0.91564 0.84896 0.85346 0.84346 0.84320
0.85456 0.85383 0.85473 0.85338 0.84234
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 33.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.89 8.58 59.85 0.51 1.41 16
2 N -0.43 -11.30 2.99 -123.32 -0.37 -11.66 16
3 C -0.35 -9.89 8.73 -15.01 -0.13 -10.02 16
4 H 0.10 2.90 7.94 -52.48 -0.42 2.48 16
5 C 0.08 2.05 5.32 -17.45 -0.09 1.95 16
6 N -0.82 -21.23 10.81 55.50 0.60 -20.63 16
7 Si 0.88 20.46 29.69 -169.99 -5.05 15.42 16
8 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16
9 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16
10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
11 C 0.48 12.29 7.27 -12.38 -0.09 12.20 16
12 O -0.58 -16.69 16.85 5.28 0.09 -16.60 16
13 C -0.08 -1.61 5.30 -104.97 -0.56 -2.16 16
14 C -0.08 -1.47 9.65 -39.16 -0.38 -1.85 16
15 C -0.11 -1.58 9.68 -39.64 -0.38 -1.96 16
16 C -0.10 -1.38 5.15 -104.52 -0.54 -1.92 16
17 C -0.55 -4.32 5.92 36.00 0.21 -4.11 16
18 S 2.41 22.08 5.34 -107.50 -0.57 21.51 16
19 C -0.66 -2.87 10.62 101.05 1.07 -1.80 16
20 O -0.93 -12.35 18.10 -57.83 -1.05 -13.40 16
21 O -0.93 -12.39 18.10 -57.83 -1.05 -13.44 16
22 C -0.11 -1.57 9.68 -39.64 -0.38 -1.95 16
23 C -0.10 -1.83 7.36 -39.17 -0.29 -2.11 16
24 H 0.04 0.80 7.79 -51.93 -0.40 0.40 16
25 H 0.12 2.85 5.14 -51.93 -0.27 2.59 16
26 H 0.05 1.04 4.58 -51.93 -0.24 0.81 16
27 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16
28 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16
29 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16
30 H 0.14 0.66 8.09 -51.92 -0.42 0.24 16
31 H 0.14 0.65 8.08 -51.93 -0.42 0.23 16
32 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16
33 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16
34 H 0.13 0.30 8.14 -51.92 -0.42 -0.13 16
35 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16
36 H 0.14 2.37 5.74 -52.48 -0.30 2.07 16
LS Contribution 320.73 15.07 4.83 4.83
Total: -1.00 -37.24 320.73 -7.74 -44.98
By element:
Atomic # 1 Polarization: 5.46 SS G_CDS: -4.14 Total: 1.33 kcal
Atomic # 6 Polarization: -11.29 SS G_CDS: -1.04 Total: -12.33 kcal
Atomic # 7 Polarization: -32.53 SS G_CDS: 0.23 Total: -32.29 kcal
Atomic # 8 Polarization: -41.44 SS G_CDS: -2.00 Total: -43.44 kcal
Atomic # 14 Polarization: 20.46 SS G_CDS: -5.05 Total: 15.42 kcal
Atomic # 16 Polarization: 22.08 SS G_CDS: -0.57 Total: 21.51 kcal
Total LS contribution 4.83 Total: 4.83 kcal
Total: -37.24 -7.74 -44.98 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701288198.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.660 kcal
(2) G-P(sol) polarization free energy of solvation -37.236 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.895 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.976 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.635 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds