Wall clock time and date at job start Tue Mar 31 2020 03:15:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.36864 * 119.99862 * 2 1
4 4 H 1.08006 * 119.99937 * 137.58640 * 3 2 1
5 5 C 1.39047 * 120.00381 * 317.58801 * 3 2 1
6 6 N 1.31360 * 120.00260 * 44.64018 * 5 3 2
7 7 Si 1.86807 * 119.99937 * 224.64837 * 5 3 2
8 8 H 1.48500 * 109.47225 * 359.97438 * 7 5 3
9 9 H 1.48498 * 109.47241 * 119.99792 * 7 5 3
10 10 H 1.48502 * 109.46820 * 239.99568 * 7 5 3
11 11 C 1.34780 * 119.99865 * 180.02562 * 2 1 3
12 12 O 1.21594 * 119.99568 * 187.78509 * 11 2 1
13 13 C 1.47726 * 119.99959 * 7.77877 * 11 2 1
14 14 C 1.39650 * 120.14298 * 138.99493 * 13 11 2
15 15 C 1.37938 * 119.84024 * 180.29951 * 14 13 11
16 16 C 1.38377 * 120.15410 * 359.42492 * 15 14 13
17 17 C 1.50697 * 119.85217 * 180.28006 * 16 15 14
18 18 S 1.81405 * 109.47158 * 270.32483 * 17 16 15
19 19 C 1.81402 * 101.92095 * 179.97438 * 18 17 16
20 20 O 1.42102 * 108.57349 * 294.48438 * 18 17 16
21 21 O 1.42098 * 108.58163 * 65.50747 * 18 17 16
22 22 C 1.38376 * 120.30479 * 0.60049 * 16 15 14
23 23 C 1.37942 * 120.14740 * 359.67985 * 22 16 15
24 24 H 1.09001 * 109.47138 * 278.65321 * 1 2 3
25 25 H 1.08994 * 109.47178 * 38.65922 * 1 2 3
26 26 H 1.09007 * 109.47183 * 158.65529 * 1 2 3
27 27 H 0.97001 * 120.00420 * 180.02562 * 6 5 3
28 28 H 1.07994 * 120.08147 * 0.02562 * 14 13 11
29 29 H 1.07998 * 119.92397 * 179.70236 * 15 14 13
30 30 H 1.09009 * 109.47060 * 30.31548 * 17 16 15
31 31 H 1.08994 * 109.47457 * 150.32041 * 17 16 15
32 32 H 1.08994 * 109.47036 * 59.99967 * 19 18 17
33 33 H 1.09004 * 109.46866 * 179.97438 * 19 18 17
34 34 H 1.09000 * 109.46817 * 299.98997 * 19 18 17
35 35 H 1.07998 * 119.92822 * 179.69772 * 22 16 15
36 36 H 1.08006 * 120.07482 * 179.97438 * 23 22 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1493 1.1853 0.0000
4 1 3.0174 1.3077 0.6309
5 6 1.7270 2.2320 -0.8121
6 7 0.4514 2.5383 -0.8786
7 14 2.9738 3.2024 -1.8089
8 1 4.3347 2.6629 -1.5596
9 1 2.6514 3.0854 -3.2537
10 1 2.9263 4.6307 -1.4052
11 6 2.1389 -1.1672 -0.0005
12 8 3.3464 -1.1721 0.1421
13 6 1.4104 -2.4406 -0.1742
14 6 1.9431 -3.4489 -0.9803
15 6 1.2546 -4.6331 -1.1431
16 6 0.0447 -4.8277 -0.5005
17 6 -0.6987 -6.1264 -0.6781
18 16 -1.8119 -5.9959 -2.1045
19 6 -2.5848 -7.6368 -2.1281
20 8 -2.8108 -5.0285 -1.8120
21 8 -1.0267 -5.8488 -3.2797
22 6 -0.4891 -3.8326 0.2993
23 6 0.1859 -2.6413 0.4663
24 1 -0.3633 0.1546 1.0160
25 1 -0.3633 0.8024 -0.6419
26 1 -0.3634 -0.9572 -0.3741
27 1 0.1567 3.2682 -1.4455
28 1 2.8896 -3.3003 -1.4785
29 1 1.6630 -5.4119 -1.7700
30 1 0.0147 -6.9333 -0.8468
31 1 -1.2807 -6.3376 0.2189
32 1 -3.1113 -7.8039 -1.1885
33 1 -3.2920 -7.6934 -2.9556
34 1 -1.8157 -8.3988 -2.2543
35 1 -1.4363 -3.9891 0.7941
36 1 -0.2320 -1.8652 1.0905
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000701288198.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:15:38
Heat of formation + Delta-G solvation = -78.437982 kcal
Electronic energy + Delta-G solvation = -21608.431045 eV
Core-core repulsion = 18185.192910 eV
Total energy + Delta-G solvation = -3423.238135 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 297.087 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.18461 -39.35032 -37.90756 -36.91846 -36.75738 -34.48994 -33.58274 -32.02932
-30.41136 -29.02335 -28.05476 -26.39747 -23.70358 -23.35624 -21.15875 -19.74364
-19.16128 -18.11032 -17.62794 -17.46604 -17.05846 -16.85899 -16.36243 -16.26320
-16.08225 -15.59901 -15.27902 -14.54943 -14.39594 -14.04127 -13.99073 -13.82683
-13.80105 -13.62331 -13.40222 -13.23422 -12.99850 -12.92796 -12.85509 -12.56774
-12.34827 -12.16881 -12.05596 -11.85808 -11.58883 -10.65075 -10.53718 -9.97831
-9.69143 -9.63594 -8.70725 -6.01675 -1.00004 0.05329 0.36635 1.25761
1.37405 1.51181 1.93297 2.02043 2.17114 2.59967 2.72528 2.86420
3.09215 3.18003 3.51629 3.77624 3.95081 3.99253 4.17554 4.18893
4.36032 4.38592 4.53929 4.58350 4.62983 4.82150 4.90428 5.03223
5.05686 5.20180 5.27062 5.36289 5.47323 5.58319 5.88593 6.13788
6.47557 7.04609 7.30491 7.96245 8.32968
Molecular weight = 297.09amu
Principal moments of inertia in cm(-1)
A = 0.025771 B = 0.003763 C = 0.003622
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1086.219950 B = 7439.486747 C = 7728.725903
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.047 3.953
2 N -0.444 5.444
3 C -0.401 4.401
4 H 0.064 0.936
5 C 0.052 3.948
6 N -0.827 5.827
7 Si 0.947 3.053
8 H -0.281 1.281
9 H -0.265 1.265
10 H -0.261 1.261
11 C 0.472 3.528
12 O -0.629 6.629
13 C -0.118 4.118
14 C -0.096 4.096
15 C -0.107 4.107
16 C -0.090 4.090
17 C -0.552 4.552
18 S 2.402 3.598
19 C -0.630 4.630
20 O -0.984 6.984
21 O -0.987 6.987
22 C -0.108 4.108
23 C -0.110 4.110
24 H 0.045 0.955
25 H 0.100 0.900
26 H 0.075 0.925
27 H 0.285 0.715
28 H 0.120 0.880
29 H 0.162 0.838
30 H 0.180 0.820
31 H 0.182 0.818
32 H 0.159 0.841
33 H 0.134 0.866
34 H 0.158 0.842
35 H 0.166 0.834
36 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.935 -22.897 -1.016 25.394
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.095 4.095
2 N -0.161 5.161
3 C -0.526 4.526
4 H 0.082 0.918
5 C -0.158 4.158
6 N -0.459 5.459
7 Si 0.769 3.231
8 H -0.206 1.206
9 H -0.190 1.190
10 H -0.186 1.186
11 C 0.263 3.737
12 O -0.518 6.518
13 C -0.122 4.122
14 C -0.115 4.115
15 C -0.126 4.126
16 C -0.092 4.092
17 C -0.679 4.679
18 S 2.591 3.409
19 C -0.783 4.783
20 O -0.981 6.981
21 O -0.984 6.984
22 C -0.127 4.127
23 C -0.129 4.129
24 H 0.064 0.936
25 H 0.117 0.883
26 H 0.094 0.906
27 H 0.096 0.904
28 H 0.138 0.862
29 H 0.180 0.820
30 H 0.198 0.802
31 H 0.200 0.800
32 H 0.178 0.822
33 H 0.152 0.848
34 H 0.177 0.823
35 H 0.184 0.816
36 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges -10.733 -21.958 -1.601 24.493
hybrid contribution 0.985 0.600 0.229 1.176
sum -9.748 -21.358 -1.372 23.518
Atomic orbital electron populations
1.22936 0.80655 1.03815 1.02069 1.43513 1.06267 1.04390 1.61960
1.18934 1.12939 0.92109 1.28650 0.91806 1.26083 0.97407 0.97325
0.95035 1.70017 1.17217 1.26388 1.32277 0.85692 0.80144 0.78009
0.79221 1.20619 1.19011 1.18559 1.18883 0.86956 0.84678 0.83206
1.90541 1.16289 1.87795 1.57154 1.20199 0.96698 0.94337 1.00933
1.21239 0.99925 0.93042 0.97339 1.21355 0.94655 0.97114 0.99470
1.19421 0.95658 0.95056 0.99017 1.29333 1.15335 1.01636 1.21624
1.08139 0.76414 0.79583 0.76746 1.30064 1.14884 1.19599 1.13760
1.93555 1.59164 1.59914 1.85504 1.93550 1.71308 1.86931 1.46623
1.21435 1.00838 0.91860 0.98519 1.21723 0.93131 0.98723 0.99299
0.93635 0.88258 0.90647 0.90408 0.86227 0.82022 0.80220 0.80013
0.82249 0.84772 0.82335 0.81616 0.84400
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 2.25 8.58 127.77 1.10 3.34 16
2 N -0.44 -24.85 2.99 -662.32 -1.98 -26.83 16
3 C -0.40 -24.22 8.73 84.10 0.73 -23.49 16
4 H 0.06 4.16 7.94 -2.91 -0.02 4.13 16
5 C 0.05 2.86 5.32 84.96 0.45 3.31 16
6 N -0.83 -43.66 10.81 21.68 0.23 -43.42 16
7 Si 0.95 43.44 29.69 68.60 2.04 45.47 16
8 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16
9 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16
10 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16
11 C 0.47 25.92 7.27 86.75 0.63 26.55 16
12 O -0.63 -39.24 16.85 -4.01 -0.07 -39.31 16
13 C -0.12 -5.09 5.30 -20.09 -0.11 -5.20 16
14 C -0.10 -3.62 9.65 22.54 0.22 -3.40 16
15 C -0.11 -2.96 9.68 22.23 0.22 -2.74 16
16 C -0.09 -2.07 5.15 -19.80 -0.10 -2.17 16
17 C -0.55 -5.37 5.92 71.23 0.42 -4.94 16
18 S 2.40 34.93 5.34 -56.49 -0.30 34.62 16
19 C -0.63 -1.47 10.62 113.37 1.20 -0.27 16
20 O -0.98 -23.81 18.10 -127.37 -2.31 -26.12 16
21 O -0.99 -24.21 18.10 -127.37 -2.30 -26.52 16
22 C -0.11 -2.84 9.68 22.23 0.22 -2.62 16
23 C -0.11 -3.87 7.36 22.54 0.17 -3.71 16
24 H 0.05 2.02 7.79 -2.39 -0.02 2.00 16
25 H 0.10 5.06 5.14 -2.39 -0.01 5.05 16
26 H 0.08 3.16 4.58 -2.38 -0.01 3.15 16
27 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16
28 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16
29 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16
30 H 0.18 0.39 8.09 -2.39 -0.02 0.37 16
31 H 0.18 0.32 8.08 -2.39 -0.02 0.30 16
32 H 0.16 -0.49 8.14 -2.39 -0.02 -0.51 16
33 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16
34 H 0.16 -0.46 8.14 -2.39 -0.02 -0.48 16
35 H 0.17 3.09 8.06 -2.91 -0.02 3.06 16
36 H 0.14 4.76 5.74 -2.91 -0.02 4.74 16
Total: -1.00 -90.38 320.73 1.56 -88.82
By element:
Atomic # 1 Polarization: 7.52 SS G_CDS: 1.10 Total: 8.62 kcal
Atomic # 6 Polarization: -20.48 SS G_CDS: 5.15 Total: -15.34 kcal
Atomic # 7 Polarization: -68.50 SS G_CDS: -1.75 Total: -70.25 kcal
Atomic # 8 Polarization: -87.27 SS G_CDS: -4.68 Total: -91.95 kcal
Atomic # 14 Polarization: 43.44 SS G_CDS: 2.04 Total: 45.47 kcal
Atomic # 16 Polarization: 34.93 SS G_CDS: -0.30 Total: 34.62 kcal
Total: -90.38 1.56 -88.82 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701288198.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.382 kcal
(2) G-P(sol) polarization free energy of solvation -90.378 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.997 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.820 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.438 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds