Wall clock time and date at job start Tue Mar 31 2020 03:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 119.99817 * 2 1 4 4 H 1.48492 * 109.47314 * 270.00220 * 3 2 1 5 5 H 1.48505 * 109.46940 * 30.00003 * 3 2 1 6 6 H 1.48501 * 109.47377 * 149.99730 * 3 2 1 7 7 C 1.39942 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00020 * 197.84490 * 7 2 1 9 9 C 1.41400 * 120.00299 * 17.84379 * 7 2 1 10 10 C 1.40710 * 120.24516 * 204.38481 * 9 7 2 11 11 C 1.37615 * 119.74572 * 180.02562 * 10 9 7 12 12 C 1.38643 * 120.24536 * 0.02562 * 11 10 9 13 13 S 1.76204 * 119.74923 * 179.97438 * 12 11 10 14 14 O 1.42102 * 106.39841 * 336.46159 * 13 12 11 15 15 O 1.42099 * 106.40099 * 203.54258 * 13 12 11 16 16 N 1.65590 * 107.21669 * 89.99916 * 13 12 11 17 17 C 1.46501 * 120.00252 * 65.00157 * 16 13 12 18 18 C 1.50704 * 109.47487 * 164.99647 * 17 16 13 19 19 C 1.30998 * 119.99879 * 124.99855 * 18 17 16 20 20 C 1.50691 * 120.00006 * 180.02562 * 19 18 17 21 21 O 1.42900 * 109.47341 * 135.00399 * 20 19 18 22 22 C 1.38635 * 120.49981 * 0.25138 * 12 11 10 23 23 C 1.37611 * 120.24810 * 359.45317 * 22 12 11 24 24 H 0.96992 * 120.00351 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.12813 * 359.97438 * 10 9 7 26 26 H 1.07996 * 119.88144 * 179.97438 * 11 10 9 27 27 H 0.97006 * 120.00253 * 245.00217 * 16 13 12 28 28 H 1.09001 * 109.47187 * 284.99976 * 17 16 13 29 29 H 1.09001 * 109.46717 * 44.99851 * 17 16 13 30 30 H 1.07995 * 119.99911 * 305.00201 * 18 17 16 31 31 H 1.07996 * 119.99682 * 0.02562 * 19 18 17 32 32 H 1.09002 * 109.47436 * 255.00316 * 20 19 18 33 33 H 1.09000 * 109.47385 * 14.99981 * 20 19 18 34 34 H 0.96706 * 114.00270 * 180.02562 * 21 20 19 35 35 H 1.08004 * 119.87204 * 179.70227 * 22 12 11 36 36 H 1.08000 * 120.12973 * 180.27716 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0465 -1.4000 5 1 1.4395 2.6527 0.7001 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3521 -2.4069 -0.3763 10 6 1.8260 -3.6499 0.0824 11 6 1.1801 -4.8065 -0.2901 12 6 0.0668 -4.7502 -1.1145 13 16 -0.7498 -6.2394 -1.5839 14 8 0.2111 -7.2793 -1.4624 15 8 -1.4385 -5.9551 -2.7939 16 7 -1.9122 -6.5413 -0.4439 17 6 -3.0418 -5.6216 -0.2881 18 6 -4.1225 -6.2863 0.5252 19 6 -4.5791 -5.7054 1.6069 20 6 -5.6592 -6.3703 2.4205 21 8 -5.3258 -6.2939 3.8080 22 6 -0.4053 -3.5316 -1.5770 23 6 0.2212 -2.3619 -1.2124 24 1 -0.4850 0.8399 0.0004 25 1 2.6938 -3.6961 0.7237 26 1 1.5421 -5.7617 0.0604 27 1 -1.8452 -7.3271 0.1209 28 1 -2.7072 -4.7181 0.2217 29 1 -3.4353 -5.3599 -1.2703 30 1 -4.5203 -7.2416 0.2163 31 1 -4.1814 -4.7499 1.9156 32 1 -6.6088 -5.8640 2.2467 33 1 -5.7455 -7.4158 2.1246 34 1 -5.9784 -6.7034 4.3925 35 1 -1.2705 -3.4999 -2.2227 36 1 -0.1510 -1.4132 -1.5702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717553506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:28 Heat of formation + Delta-G solvation = -100.983777 kcal Electronic energy + Delta-G solvation = -21099.846783 eV Core-core repulsion = 17675.630989 eV Total energy + Delta-G solvation = -3424.215794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -37.58287 -37.51012 -36.52107 -35.86276 -35.11821 -34.03738 -32.73151 -30.25386 -29.46073 -27.44570 -25.81468 -23.50753 -21.51699 -21.12566 -19.96529 -18.81160 -17.62266 -17.55910 -17.03071 -16.62299 -15.98722 -15.51772 -15.07505 -14.79215 -14.25961 -14.06083 -13.62374 -13.35221 -13.19758 -12.76989 -12.42070 -12.32976 -12.18340 -11.78168 -11.63419 -11.46450 -11.36494 -11.27377 -11.20367 -10.91948 -10.89889 -10.54127 -10.39420 -9.78387 -9.67814 -9.51055 -9.37494 -8.93677 -7.95800 -7.69838 -7.14507 -4.80037 1.22097 2.00669 2.25679 2.88241 2.91660 2.93105 2.94011 3.66654 3.81587 4.11459 4.24741 4.53910 4.80719 4.91135 5.12950 5.17971 5.25537 5.34387 5.42591 5.67646 5.81529 6.07175 6.11505 6.17543 6.49705 6.60663 6.68430 6.71449 6.91821 7.05460 7.31667 7.35755 7.38429 7.43466 7.63789 7.77561 7.97335 8.32133 8.51684 8.65408 9.77024 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.012846 B = 0.004386 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.110309 B = 6383.084248 C = 7870.435108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.436 4.436 8 H 0.088 0.912 9 C 0.139 3.861 10 C -0.239 4.239 11 C 0.003 3.997 12 C -0.787 4.787 13 S 2.695 3.305 14 O -0.986 6.986 15 O -0.985 6.985 16 N -1.123 6.123 17 C 0.149 3.851 18 C -0.148 4.148 19 C -0.147 4.147 20 C 0.106 3.894 21 O -0.569 6.569 22 C -0.018 4.018 23 C -0.183 4.183 24 H 0.289 0.711 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.410 0.590 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.379 0.621 35 H 0.103 0.897 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.607 -6.027 3.837 11.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.149 4.149 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.463 4.463 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.260 4.260 11 C -0.017 4.017 12 C -0.883 4.883 13 S 2.793 3.207 14 O -0.977 6.977 15 O -0.975 6.975 16 N -0.879 5.879 17 C 0.024 3.976 18 C -0.168 4.168 19 C -0.166 4.166 20 C 0.028 3.972 21 O -0.374 6.374 22 C -0.038 4.038 23 C -0.203 4.203 24 H 0.100 0.900 25 H 0.118 0.882 26 H 0.122 0.878 27 H 0.243 0.757 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.226 0.774 35 H 0.121 0.879 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.185 -5.957 2.729 11.282 hybrid contribution -0.101 0.795 0.996 1.279 sum -9.285 -5.162 3.726 11.258 Atomic orbital electron populations 1.69809 1.07919 1.30359 1.30755 1.26128 0.94894 1.02118 0.91802 0.86139 0.80514 0.79469 0.79792 1.18783 1.19868 1.18192 1.19962 0.98515 0.91195 1.36622 0.89418 1.17857 0.90047 0.92134 0.86385 1.21051 1.04445 0.92711 1.07744 1.20170 0.92146 0.97303 0.92125 1.29148 1.16541 1.15853 1.26798 1.01177 0.72300 0.74282 0.72895 1.93491 1.60505 1.56924 1.86742 1.93479 1.74463 1.86287 1.43265 1.55719 1.38550 1.35997 1.57678 1.20220 0.84947 0.91992 1.00488 1.22871 0.97167 1.00074 0.96691 1.22733 0.97990 1.00885 0.95021 1.21143 0.96175 0.98536 0.81316 1.86557 1.51382 1.82787 1.16710 1.20268 0.96837 0.91698 0.95000 1.21334 1.00066 0.96857 1.02029 0.89989 0.88196 0.87767 0.75708 0.90713 0.89612 0.86711 0.86005 0.92658 0.93135 0.77435 0.87868 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.09 10.95 55.55 0.61 -17.48 16 2 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 3 Si 0.92 17.03 29.60 -169.99 -5.03 12.00 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 6 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 7 C -0.44 -10.71 9.05 -37.74 -0.34 -11.05 16 8 H 0.09 2.05 7.91 -52.49 -0.42 1.63 16 9 C 0.14 3.54 5.57 -106.83 -0.60 2.95 16 10 C -0.24 -5.70 9.80 -38.88 -0.38 -6.08 16 11 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 12 C -0.79 -17.35 5.97 -39.29 -0.23 -17.58 16 13 S 2.69 51.82 5.73 -107.50 -0.62 51.21 16 14 O -0.99 -20.87 17.26 -57.17 -0.99 -21.86 16 15 O -0.98 -20.91 16.72 -57.17 -0.96 -21.86 16 16 N -1.12 -17.03 5.99 -11.65 -0.07 -17.10 16 17 C 0.15 2.09 6.66 -5.19 -0.03 2.06 16 18 C -0.15 -1.69 9.25 -36.02 -0.33 -2.03 16 19 C -0.15 -1.67 9.50 -36.03 -0.34 -2.02 16 20 C 0.11 0.96 7.46 36.00 0.27 1.23 16 21 O -0.57 -5.79 13.64 -35.23 -0.48 -6.27 16 22 C -0.02 -0.41 9.49 -39.66 -0.38 -0.78 16 23 C -0.18 -4.55 8.70 -38.88 -0.34 -4.89 16 24 H 0.29 6.11 8.30 -40.82 -0.34 5.77 16 25 H 0.10 2.20 8.06 -52.48 -0.42 1.77 16 26 H 0.10 2.13 7.60 -52.49 -0.40 1.73 16 27 H 0.41 5.30 8.65 -34.47 -0.30 5.01 16 28 H 0.07 1.11 7.79 -51.93 -0.40 0.71 16 29 H 0.09 1.19 7.75 -51.93 -0.40 0.78 16 30 H 0.11 1.10 7.90 -52.49 -0.41 0.69 16 31 H 0.12 1.52 7.84 -52.49 -0.41 1.11 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.38 7.86 -51.93 -0.41 -0.03 16 34 H 0.38 1.87 9.12 45.56 0.42 2.28 16 35 H 0.10 2.18 7.59 -52.48 -0.40 1.78 16 36 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 LS Contribution 327.96 15.07 4.94 4.94 Total: -1.00 -31.52 327.96 -9.20 -40.72 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -3.44 Total: 12.63 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: -3.17 Total: -36.93 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.54 Total: -34.58 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -2.42 Total: -49.99 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Atomic # 16 Polarization: 51.82 SS G_CDS: -0.62 Total: 51.21 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.52 -9.20 -40.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717553506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.266 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds