Wall clock time and date at job start Tue Mar 31 2020 03:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 119.99817 * 2 1 4 4 H 1.48492 * 109.47314 * 270.00220 * 3 2 1 5 5 H 1.48505 * 109.46940 * 30.00003 * 3 2 1 6 6 H 1.48501 * 109.47377 * 149.99730 * 3 2 1 7 7 C 1.39942 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00020 * 197.84490 * 7 2 1 9 9 C 1.41400 * 120.00299 * 17.84379 * 7 2 1 10 10 C 1.40710 * 120.24516 * 204.38481 * 9 7 2 11 11 C 1.37615 * 119.74572 * 180.02562 * 10 9 7 12 12 C 1.38643 * 120.24536 * 0.02562 * 11 10 9 13 13 S 1.76204 * 119.74923 * 179.97438 * 12 11 10 14 14 O 1.42102 * 106.39841 * 336.46159 * 13 12 11 15 15 O 1.42099 * 106.40099 * 203.54258 * 13 12 11 16 16 N 1.65590 * 107.21669 * 89.99916 * 13 12 11 17 17 C 1.46501 * 120.00252 * 65.00157 * 16 13 12 18 18 C 1.50704 * 109.47487 * 164.99647 * 17 16 13 19 19 C 1.30998 * 119.99879 * 124.99855 * 18 17 16 20 20 C 1.50691 * 120.00006 * 180.02562 * 19 18 17 21 21 O 1.42900 * 109.47341 * 135.00399 * 20 19 18 22 22 C 1.38635 * 120.49981 * 0.25138 * 12 11 10 23 23 C 1.37611 * 120.24810 * 359.45317 * 22 12 11 24 24 H 0.96992 * 120.00351 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.12813 * 359.97438 * 10 9 7 26 26 H 1.07996 * 119.88144 * 179.97438 * 11 10 9 27 27 H 0.97006 * 120.00253 * 245.00217 * 16 13 12 28 28 H 1.09001 * 109.47187 * 284.99976 * 17 16 13 29 29 H 1.09001 * 109.46717 * 44.99851 * 17 16 13 30 30 H 1.07995 * 119.99911 * 305.00201 * 18 17 16 31 31 H 1.07996 * 119.99682 * 0.02562 * 19 18 17 32 32 H 1.09002 * 109.47436 * 255.00316 * 20 19 18 33 33 H 1.09000 * 109.47385 * 14.99981 * 20 19 18 34 34 H 0.96706 * 114.00270 * 180.02562 * 21 20 19 35 35 H 1.08004 * 119.87204 * 179.70227 * 22 12 11 36 36 H 1.08000 * 120.12973 * 180.27716 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0465 -1.4000 5 1 1.4395 2.6527 0.7001 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3521 -2.4069 -0.3763 10 6 1.8260 -3.6499 0.0824 11 6 1.1801 -4.8065 -0.2901 12 6 0.0668 -4.7502 -1.1145 13 16 -0.7498 -6.2394 -1.5839 14 8 0.2111 -7.2793 -1.4624 15 8 -1.4385 -5.9551 -2.7939 16 7 -1.9122 -6.5413 -0.4439 17 6 -3.0418 -5.6216 -0.2881 18 6 -4.1225 -6.2863 0.5252 19 6 -4.5791 -5.7054 1.6069 20 6 -5.6592 -6.3703 2.4205 21 8 -5.3258 -6.2939 3.8080 22 6 -0.4053 -3.5316 -1.5770 23 6 0.2212 -2.3619 -1.2124 24 1 -0.4850 0.8399 0.0004 25 1 2.6938 -3.6961 0.7237 26 1 1.5421 -5.7617 0.0604 27 1 -1.8452 -7.3271 0.1209 28 1 -2.7072 -4.7181 0.2217 29 1 -3.4353 -5.3599 -1.2703 30 1 -4.5203 -7.2416 0.2163 31 1 -4.1814 -4.7499 1.9156 32 1 -6.6088 -5.8640 2.2467 33 1 -5.7455 -7.4158 2.1246 34 1 -5.9784 -6.7034 4.3925 35 1 -1.2705 -3.4999 -2.2227 36 1 -0.1510 -1.4132 -1.5702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717553506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:27 Heat of formation + Delta-G solvation = -125.141623 kcal Electronic energy + Delta-G solvation = -21100.894346 eV Core-core repulsion = 17675.630989 eV Total energy + Delta-G solvation = -3425.263357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.38581 -38.36325 -38.10330 -36.93207 -36.78054 -35.80726 -33.76812 -32.07094 -31.29528 -28.40396 -27.62451 -24.47469 -23.30697 -22.94958 -20.93975 -20.24980 -19.42700 -18.69868 -18.35118 -17.99163 -17.33688 -17.20015 -16.12828 -15.91783 -15.79376 -15.39499 -15.14077 -14.94003 -14.55520 -14.10751 -13.97938 -13.91739 -13.58146 -13.19950 -13.10122 -13.02346 -12.93917 -12.89819 -12.85162 -12.59808 -11.98471 -11.88196 -11.55729 -11.37787 -11.24798 -11.23564 -10.53884 -10.03429 -9.79298 -9.55472 -8.87821 -6.65665 -0.32599 0.47922 1.05292 1.07985 1.35666 1.43636 1.50559 2.11401 2.30910 2.54750 2.93722 3.39182 3.52666 3.64176 4.01315 4.09598 4.29615 4.30754 4.34583 4.48079 4.53600 4.66943 4.75569 4.85660 4.91291 4.98055 5.11342 5.23839 5.52029 5.59101 5.60560 5.71044 5.75852 5.92655 6.14742 6.19612 6.48505 6.67837 6.80525 6.94084 8.07416 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.012846 B = 0.004386 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.110309 B = 6383.084248 C = 7870.435108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.036 3.964 3 Si 0.991 3.009 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.254 1.254 7 C -0.468 4.468 8 H 0.090 0.910 9 C 0.111 3.889 10 C -0.259 4.259 11 C -0.003 4.003 12 C -0.798 4.798 13 S 2.729 3.271 14 O -1.001 7.001 15 O -1.001 7.001 16 N -1.107 6.107 17 C 0.142 3.858 18 C -0.147 4.147 19 C -0.151 4.151 20 C 0.105 3.895 21 O -0.596 6.596 22 C -0.020 4.020 23 C -0.207 4.207 24 H 0.299 0.701 25 H 0.110 0.890 26 H 0.125 0.875 27 H 0.424 0.576 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.141 0.859 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.400 0.600 35 H 0.118 0.882 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.586 -6.708 4.300 13.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.184 4.184 3 Si 0.811 3.189 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.178 1.178 7 C -0.494 4.494 8 H 0.108 0.892 9 C 0.107 3.893 10 C -0.279 4.279 11 C -0.023 4.023 12 C -0.891 4.891 13 S 2.825 3.175 14 O -0.991 6.991 15 O -0.991 6.991 16 N -0.868 5.868 17 C 0.016 3.984 18 C -0.166 4.166 19 C -0.171 4.171 20 C 0.028 3.972 21 O -0.405 6.405 22 C -0.040 4.040 23 C -0.227 4.227 24 H 0.110 0.890 25 H 0.128 0.872 26 H 0.143 0.857 27 H 0.260 0.740 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.159 0.841 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.250 0.750 35 H 0.136 0.864 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.157 -6.639 3.216 12.553 hybrid contribution 0.092 0.905 0.886 1.269 sum -10.065 -5.734 4.102 12.288 Atomic orbital electron populations 1.69835 1.09312 1.31869 1.30760 1.26985 0.95594 1.05102 0.90705 0.85049 0.79145 0.74893 0.79848 1.18465 1.18701 1.17787 1.20242 0.98934 0.92179 1.38074 0.89151 1.18207 0.90717 0.93236 0.87095 1.21280 1.05243 0.92899 1.08475 1.20469 0.92069 0.97822 0.91897 1.29667 1.16722 1.17019 1.25665 1.00189 0.71982 0.72687 0.72692 1.93465 1.61742 1.56841 1.87094 1.93458 1.74673 1.86289 1.44674 1.55290 1.37678 1.36551 1.57235 1.20360 0.85271 0.91596 1.01170 1.22789 0.96505 1.00977 0.96344 1.22899 0.98575 1.00297 0.95331 1.21206 0.95667 0.99686 0.80604 1.86491 1.52994 1.83444 1.17584 1.20477 0.96996 0.91707 0.94858 1.21360 1.00984 0.97174 1.03226 0.89000 0.87190 0.85673 0.73986 0.92176 0.89357 0.84090 0.88009 0.90867 0.90994 0.74953 0.86444 0.87037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.28 10.95 21.83 0.24 -38.04 16 2 C 0.04 1.66 5.14 85.26 0.44 2.10 16 3 Si 0.99 34.75 29.60 68.60 2.03 36.78 16 4 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 5 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 6 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 7 C -0.47 -23.62 9.05 23.46 0.21 -23.41 16 8 H 0.09 4.33 7.91 -2.91 -0.02 4.31 16 9 C 0.11 5.82 5.57 -21.29 -0.12 5.70 16 10 C -0.26 -12.59 9.80 22.73 0.22 -12.37 16 11 C 0.00 -0.13 9.49 22.22 0.21 0.08 16 12 C -0.80 -35.08 5.97 22.46 0.13 -34.95 16 13 S 2.73 101.54 5.73 -56.49 -0.32 101.22 16 14 O -1.00 -40.71 17.26 -128.00 -2.21 -42.92 16 15 O -1.00 -41.21 16.72 -128.00 -2.14 -43.35 16 16 N -1.11 -31.62 5.99 -190.78 -1.14 -32.77 16 17 C 0.14 3.80 6.66 85.63 0.57 4.37 16 18 C -0.15 -3.03 9.25 25.65 0.24 -2.79 16 19 C -0.15 -3.22 9.50 25.65 0.24 -2.98 16 20 C 0.11 1.64 7.46 71.23 0.53 2.17 16 21 O -0.60 -10.95 13.64 -148.98 -2.03 -12.99 16 22 C -0.02 -0.96 9.49 22.22 0.21 -0.75 16 23 C -0.21 -10.68 8.70 22.73 0.20 -10.48 16 24 H 0.30 12.75 8.30 -92.71 -0.77 11.98 16 25 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 26 H 0.13 5.01 7.60 -2.91 -0.02 4.98 16 27 H 0.42 9.94 8.65 -96.74 -0.84 9.10 16 28 H 0.06 1.79 7.79 -2.39 -0.02 1.77 16 29 H 0.09 2.34 7.75 -2.39 -0.02 2.32 16 30 H 0.14 2.20 7.90 -2.91 -0.02 2.18 16 31 H 0.10 2.55 7.84 -2.91 -0.02 2.52 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.83 7.86 -2.39 -0.02 0.81 16 34 H 0.40 3.07 9.12 -74.05 -0.68 2.40 16 35 H 0.12 5.01 7.59 -2.91 -0.02 4.99 16 36 H 0.11 5.86 6.16 -2.91 -0.02 5.84 16 Total: -1.00 -67.68 327.96 -2.88 -70.56 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -0.39 Total: 34.82 kcal Atomic # 6 Polarization: -76.40 SS G_CDS: 3.09 Total: -73.31 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -0.90 Total: -70.80 kcal Atomic # 8 Polarization: -92.88 SS G_CDS: -6.38 Total: -99.26 kcal Atomic # 14 Polarization: 34.75 SS G_CDS: 2.03 Total: 36.78 kcal Atomic # 16 Polarization: 101.54 SS G_CDS: -0.32 Total: 101.22 kcal Total: -67.68 -2.88 -70.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717553506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.586 kcal (2) G-P(sol) polarization free energy of solvation -67.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds