Wall clock time and date at job start Tue Mar 31 2020 03:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35641 * 116.99488 * 2 1 4 4 C 1.38627 * 120.14336 * 0.27484 * 3 2 1 5 5 C 1.38138 * 120.15881 * 180.25368 * 4 3 2 6 6 C 1.38423 * 120.45186 * 359.74579 * 5 4 3 7 7 C 1.38122 * 120.27788 * 359.97438 * 6 5 4 8 8 F 1.35093 * 120.08400 * 180.02562 * 7 6 5 9 9 C 1.40027 * 119.82825 * 0.02562 * 7 6 5 10 10 C 1.47243 * 120.22019 * 179.97438 * 9 7 6 11 11 O 1.21530 * 119.99750 * 89.99744 * 10 9 7 12 12 O 1.34765 * 119.99968 * 270.00073 * 10 9 7 13 13 C 1.45206 * 116.99970 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47021 * 179.97438 * 13 12 10 15 15 O 1.21297 * 119.99980 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00037 * 180.02562 * 14 13 12 17 17 C 1.37097 * 119.99944 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00055 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99682 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00492 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99897 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46948 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47378 * 120.00054 * 21 19 17 24 24 H 1.48501 * 109.47174 * 239.99969 * 21 19 17 25 25 H 1.09001 * 109.47248 * 300.00067 * 1 2 3 26 26 H 1.08993 * 109.47011 * 60.00311 * 1 2 3 27 27 H 1.09006 * 109.46899 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.91970 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.77138 * 179.72151 * 5 4 3 30 30 H 1.08004 * 119.86134 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47070 * 300.00007 * 13 12 10 32 32 H 1.09001 * 109.46626 * 60.00025 * 13 12 10 33 33 H 0.96996 * 119.99844 * 359.97438 * 16 14 13 34 34 H 0.97002 * 120.00294 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2926 2.3731 0.0058 5 6 1.9192 3.6041 0.0005 6 6 3.3009 3.6880 -0.0053 7 6 4.0683 2.5395 -0.0053 8 9 5.4165 2.6259 -0.0104 9 6 3.4453 1.2855 0.0000 10 6 4.2549 0.0557 -0.0005 11 8 4.5933 -0.4494 1.0518 12 8 4.6208 -0.5097 -1.1678 13 6 5.4189 -1.7204 -1.0923 14 6 5.7294 -2.2049 -2.4851 15 8 5.3181 -1.5907 -3.4468 16 7 6.4633 -3.3214 -2.6622 17 6 6.7462 -3.7620 -3.9293 18 1 6.3807 -3.2146 -4.7855 19 6 7.5033 -4.9127 -4.1118 20 7 7.9485 -5.5785 -3.0700 21 14 7.8894 -5.5126 -5.8382 22 1 7.2774 -4.5926 -6.8303 23 1 9.3611 -5.5443 -6.0337 24 1 7.3361 -6.8782 -6.0230 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2140 2.3176 0.0098 29 1 1.3271 4.5073 0.0004 30 1 3.7809 4.6555 -0.0098 31 1 6.3492 -1.5099 -0.5646 32 1 4.8628 -2.4892 -0.5560 33 1 6.7919 -3.8128 -1.8932 34 1 8.4767 -6.3820 -3.1974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745311403.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:59 Heat of formation + Delta-G solvation = -193.345289 kcal Electronic energy + Delta-G solvation = -23183.157592 eV Core-core repulsion = 19188.723527 eV Total energy + Delta-G solvation = -3994.434066 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.089 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.24486 -41.98239 -40.97017 -40.03363 -38.36635 -37.59209 -36.08444 -33.47737 -32.81214 -31.09768 -30.12033 -28.35516 -26.80906 -25.42303 -23.42302 -22.44177 -21.52435 -20.13115 -19.89511 -19.08506 -18.49516 -18.24761 -17.53227 -17.43393 -17.16380 -17.05282 -16.65497 -16.57347 -16.01048 -15.78833 -15.68597 -15.61614 -14.78077 -14.18713 -13.90975 -13.87118 -13.60023 -13.48591 -13.42729 -12.96718 -12.90514 -12.51072 -12.47877 -12.11727 -12.07982 -12.01371 -11.83579 -11.62637 -10.59821 -10.16085 -10.15565 -9.50345 -8.55344 -6.06742 -0.31307 0.07226 0.73545 1.25762 1.32344 1.42630 1.57813 1.80616 1.95452 2.27070 2.36141 2.90591 3.09330 3.12422 3.44877 3.73751 3.77072 3.89313 3.95931 4.04198 4.13801 4.18788 4.32429 4.39094 4.61185 4.72580 4.88183 4.96521 5.08090 5.17423 5.34028 5.52943 5.84311 6.13833 6.30743 6.45518 6.98495 7.33847 7.87372 8.62022 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.023812 B = 0.003291 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.592713 B = 8506.296785 C = 8888.395613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.342 6.342 3 C 0.185 3.815 4 C -0.208 4.208 5 C -0.008 4.008 6 C -0.182 4.182 7 C 0.151 3.849 8 F -0.141 7.141 9 C -0.221 4.221 10 C 0.524 3.476 11 O -0.519 6.519 12 O -0.336 6.336 13 C 0.067 3.933 14 C 0.437 3.563 15 O -0.617 6.617 16 N -0.554 5.554 17 C -0.340 4.340 18 H 0.085 0.915 19 C -0.008 4.008 20 N -0.914 5.914 21 Si 1.001 2.999 22 H -0.271 1.271 23 H -0.268 1.268 24 H -0.267 1.267 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.184 0.816 29 H 0.196 0.804 30 H 0.177 0.823 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.400 0.600 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.229 17.235 9.300 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.255 6.255 3 C 0.137 3.863 4 C -0.226 4.226 5 C -0.025 4.025 6 C -0.200 4.200 7 C 0.132 3.868 8 F -0.119 7.119 9 C -0.224 4.224 10 C 0.367 3.633 11 O -0.408 6.408 12 O -0.251 6.251 13 C -0.010 4.010 14 C 0.223 3.777 15 O -0.504 6.504 16 N -0.191 5.191 17 C -0.469 4.469 18 H 0.103 0.897 19 C -0.209 4.209 20 N -0.554 5.554 21 Si 0.824 3.176 22 H -0.195 1.195 23 H -0.193 1.193 24 H -0.192 1.192 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.201 0.799 29 H 0.214 0.786 30 H 0.194 0.806 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.235 0.765 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.139 17.062 8.984 25.145 hybrid contribution 1.027 -1.146 -0.156 1.546 sum -15.112 15.916 8.828 23.657 Atomic orbital electron populations 1.23587 0.74340 1.06190 1.03816 1.86073 1.25419 1.26778 1.87216 1.18814 0.88569 0.86869 0.92015 1.21739 1.02469 0.90237 1.08141 1.21592 0.92727 0.98988 0.89242 1.21442 0.95173 0.96980 1.06438 1.17696 0.76904 0.92722 0.99527 1.91520 1.29990 1.96943 1.93471 1.18458 0.92512 0.90178 1.21269 1.21316 0.76564 0.84027 0.81370 1.90805 1.53368 1.63383 1.33233 1.86719 1.64366 1.39947 1.34021 1.22631 0.96748 0.85599 0.96013 1.19946 0.84101 0.83550 0.90057 1.90520 1.57533 1.58992 1.43358 1.41720 1.45811 1.22310 1.09280 1.19791 1.32905 1.09379 0.84829 0.89736 1.26182 0.95402 0.95465 1.03864 1.69682 1.35598 1.18463 1.31681 0.84756 0.78375 0.78162 0.76314 1.19544 1.19305 1.19219 0.89484 0.90049 0.86966 0.79880 0.78643 0.80577 0.87601 0.87452 0.76519 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -8.92 9.95 -89.55 -0.89 -9.81 16 3 C 0.18 4.61 6.70 22.85 0.15 4.77 16 4 C -0.21 -2.81 9.03 22.34 0.20 -2.61 16 5 C -0.01 -0.08 10.02 22.29 0.22 0.14 16 6 C -0.18 -2.90 10.00 22.29 0.22 -2.68 16 7 C 0.15 4.13 7.29 22.68 0.17 4.29 16 8 F -0.14 -4.45 16.83 44.97 0.76 -3.69 16 9 C -0.22 -7.14 5.77 -19.99 -0.12 -7.25 16 10 C 0.52 21.16 6.57 70.19 0.46 21.62 16 11 O -0.52 -22.25 16.90 19.74 0.33 -21.92 16 12 O -0.34 -15.15 9.77 -50.37 -0.49 -15.64 16 13 C 0.07 2.92 5.95 71.24 0.42 3.34 16 14 C 0.44 23.14 7.86 87.66 0.69 23.83 16 15 O -0.62 -37.61 16.08 15.72 0.25 -37.36 16 16 N -0.55 -29.97 5.29 -306.98 -1.62 -31.60 16 17 C -0.34 -19.77 9.68 84.04 0.81 -18.96 16 18 H 0.08 5.21 7.16 -2.91 -0.02 5.18 16 19 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 20 N -0.91 -49.65 13.05 21.66 0.28 -49.37 16 21 Si 1.00 42.87 29.55 68.60 2.03 44.90 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 25 H 0.09 0.63 7.65 -2.39 -0.02 0.61 16 26 H 0.08 0.72 7.67 -2.39 -0.02 0.70 16 27 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.18 0.96 6.29 -2.91 -0.02 0.94 16 29 H 0.20 -0.03 8.06 -2.91 -0.02 -0.06 16 30 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.11 4.18 8.14 -2.39 -0.02 4.16 16 32 H 0.11 4.21 8.14 -2.39 -0.02 4.19 16 33 H 0.40 20.39 7.90 -92.71 -0.73 19.66 16 34 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -82.26 318.43 5.90 -76.35 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.44 Total: 20.32 kcal Atomic # 6 Polarization: 22.99 SS G_CDS: 4.82 Total: 27.81 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -1.34 Total: -80.97 kcal Atomic # 8 Polarization: -83.92 SS G_CDS: -0.80 Total: -84.72 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.76 Total: -3.69 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -82.26 5.90 -76.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745311403.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.992 kcal (2) G-P(sol) polarization free energy of solvation -82.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds