Wall clock time and date at job start Tue Mar 31 2020 03:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35467 * 117.00050 * 2 1 4 4 N 1.32409 * 119.07471 * 359.97426 * 3 2 1 5 5 C 1.32578 * 120.88805 * 180.02562 * 4 3 2 6 6 O 1.35509 * 120.45365 * 179.97438 * 5 4 3 7 7 C 1.39666 * 119.09471 * 359.74924 * 5 4 3 8 8 C 1.39145 * 118.31820 * 0.49247 * 7 5 4 9 9 C 1.48374 * 120.48805 * 179.78510 * 8 7 5 10 10 O 1.21393 * 120.00042 * 359.71920 * 9 8 7 11 11 O 1.34638 * 120.00025 * 179.44077 * 9 8 7 12 12 C 1.45205 * 117.00324 * 180.27072 * 11 9 8 13 13 C 1.50695 * 109.47702 * 180.02562 * 12 11 9 14 14 O 1.21295 * 119.99849 * 0.02562 * 13 12 11 15 15 N 1.34771 * 120.00260 * 180.02562 * 13 12 11 16 16 C 1.37102 * 119.99980 * 179.97438 * 15 13 12 17 17 H 1.07995 * 120.00071 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99727 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00092 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99739 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47140 * 60.00478 * 20 18 16 22 22 H 1.48501 * 109.46843 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46999 * 300.00350 * 20 18 16 24 24 N 1.32048 * 119.07773 * 179.97438 * 3 2 1 25 25 H 1.09008 * 109.47003 * 60.00538 * 1 2 3 26 26 H 1.08995 * 109.47157 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47419 * 300.00681 * 1 2 3 28 28 H 0.96707 * 114.00016 * 90.00060 * 6 5 4 29 29 H 1.08000 * 120.84550 * 180.27223 * 7 5 4 30 30 H 1.08997 * 109.46894 * 300.00959 * 12 11 9 31 31 H 1.09010 * 109.46220 * 60.00105 * 12 11 9 32 32 H 0.96999 * 119.99848 * 0.02562 * 15 13 12 33 33 H 0.97004 * 119.99735 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 7 1.3050 2.3057 -0.0005 5 6 1.8692 3.5054 -0.0010 6 8 1.1044 4.6241 -0.0021 7 6 3.2626 3.6006 0.0043 8 6 4.0047 2.4235 -0.0006 9 6 5.4877 2.4686 0.0000 10 8 6.0625 3.5378 -0.0005 11 8 6.1960 1.3236 0.0067 12 6 7.6431 1.4435 0.0129 13 6 8.2611 0.0691 0.0192 14 8 7.5518 -0.9148 0.0180 15 7 9.6019 -0.0668 0.0261 16 6 10.1642 -1.3172 0.0324 17 1 9.5326 -2.1933 0.0314 18 6 11.5466 -1.4573 0.0390 19 7 12.3150 -0.3913 0.0397 20 14 12.3126 -3.1610 0.0468 21 1 11.8827 -3.9026 -1.1658 22 1 13.7925 -3.0382 0.0538 23 1 11.8716 -3.8965 1.2591 24 7 3.3636 1.2549 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.8821 4.9494 0.8811 29 1 3.7519 4.5634 0.0084 30 1 7.9667 1.9830 -0.8772 31 1 7.9585 1.9883 0.9028 32 1 10.1692 0.7200 0.0274 33 1 13.2801 -0.4892 0.0447 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770515391.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:22 Heat of formation + Delta-G solvation = -122.527234 kcal Electronic energy + Delta-G solvation = -22690.156393 eV Core-core repulsion = 18718.713190 eV Total energy + Delta-G solvation = -3971.443203 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.88238 -40.33086 -39.07814 -38.19266 -37.65574 -36.30428 -33.98723 -33.80210 -31.62830 -31.35898 -28.72372 -27.83998 -25.95672 -24.54682 -24.19332 -21.81974 -19.74052 -19.57066 -19.15942 -18.10810 -17.94717 -17.25733 -16.79805 -16.57390 -16.37805 -15.98196 -15.57768 -15.38204 -14.89123 -14.53977 -14.33747 -13.97759 -13.71518 -13.06985 -12.79712 -12.40957 -12.32802 -12.07568 -11.60965 -11.59861 -11.34678 -11.13779 -11.09286 -11.04271 -10.51074 -10.46653 -10.27143 -9.82318 -9.56994 -9.46990 -8.49800 -8.05751 -6.47722 -3.89532 -0.05453 0.41880 1.92738 2.16839 2.39172 2.77710 3.17821 3.24748 3.29411 3.29567 3.75800 3.88561 3.99768 4.20041 4.36118 4.65178 4.78713 4.91809 4.93542 5.04366 5.16216 5.21953 5.35861 5.48536 5.65586 6.02407 6.10520 6.34701 6.60446 6.78137 7.42597 7.50314 7.65900 7.96220 8.51015 9.09655 9.41311 9.91727 10.69527 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.026681 B = 0.002897 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.166473 B = 9663.003358 C =10689.068570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.277 6.277 3 C 0.526 3.474 4 N -0.572 5.572 5 C 0.403 3.597 6 O -0.467 6.467 7 C -0.219 4.219 8 C 0.210 3.790 9 C 0.521 3.479 10 O -0.487 6.487 11 O -0.293 6.293 12 C 0.056 3.944 13 C 0.438 3.562 14 O -0.568 6.568 15 N -0.553 5.553 16 C -0.302 4.302 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.898 5.898 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.272 1.272 24 N -0.473 5.473 25 H 0.065 0.935 26 H 0.108 0.892 27 H 0.064 0.936 28 H 0.413 0.587 29 H 0.174 0.826 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.395 0.605 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.658 10.335 1.690 23.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.177 6.177 3 C 0.223 3.777 4 N -0.314 5.314 5 C 0.213 3.787 6 O -0.275 6.275 7 C -0.244 4.244 8 C 0.064 3.936 9 C 0.362 3.638 10 O -0.374 6.374 11 O -0.205 6.205 12 C -0.021 4.021 13 C 0.223 3.777 14 O -0.452 6.452 15 N -0.191 5.191 16 C -0.431 4.431 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.539 5.539 20 Si 0.761 3.239 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.197 1.197 24 N -0.202 5.202 25 H 0.083 0.917 26 H 0.126 0.874 27 H 0.083 0.917 28 H 0.274 0.726 29 H 0.191 0.809 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.228 0.772 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.054 8.776 1.099 22.837 hybrid contribution 0.907 0.837 0.438 1.310 sum -20.147 9.613 1.537 22.376 Atomic orbital electron populations 1.23083 0.75239 1.04063 1.02919 1.86226 1.23612 1.21447 1.86462 1.20226 0.85062 0.84059 0.88341 1.67451 1.43287 0.99253 1.21375 1.18817 0.86381 0.84564 0.88903 1.84745 1.71069 1.37053 1.34660 1.22764 0.93779 1.01415 1.06432 1.20124 0.91958 0.87650 0.93899 1.20455 0.86557 0.82929 0.73889 1.90872 1.70494 1.30876 1.45143 1.86741 1.20896 1.31508 1.81327 1.22947 0.75763 0.99483 1.03893 1.19243 0.83590 0.88740 0.86170 1.90604 1.60803 1.39055 1.54709 1.41674 1.03693 1.09625 1.64065 1.19689 0.90257 0.84963 1.48178 0.87623 1.25299 0.96030 0.99479 0.96914 1.69606 1.05535 1.29006 1.49763 0.85858 0.77475 0.81343 0.79223 1.19744 1.20901 1.19750 1.67692 1.07480 1.28633 1.16440 0.91670 0.87369 0.91713 0.72603 0.80865 0.89033 0.89032 0.77168 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.36 101.05 1.05 1.37 16 2 O -0.28 -3.54 10.56 -18.09 -0.19 -3.73 16 3 C 0.53 7.19 8.48 -91.41 -0.78 6.42 16 4 N -0.57 -6.52 9.22 -14.79 -0.14 -6.66 16 5 C 0.40 3.91 7.83 -16.70 -0.13 3.78 16 6 O -0.47 -3.12 13.57 -18.22 -0.25 -3.37 16 7 C -0.22 -2.31 9.67 -38.71 -0.37 -2.69 16 8 C 0.21 2.98 6.78 -82.72 -0.56 2.42 16 9 C 0.52 8.45 7.97 34.90 0.28 8.73 16 10 O -0.49 -7.86 16.20 -19.18 -0.31 -8.17 16 11 O -0.29 -5.69 9.61 -47.00 -0.45 -6.14 16 12 C 0.06 1.07 5.95 36.00 0.21 1.28 16 13 C 0.44 10.65 7.86 -10.99 -0.09 10.57 16 14 O -0.57 -16.17 16.08 -14.11 -0.23 -16.40 16 15 N -0.55 -13.99 5.29 -10.97 -0.06 -14.04 16 16 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 17 H 0.11 3.06 7.16 -52.49 -0.38 2.69 16 18 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 19 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16 20 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 N -0.47 -7.55 10.27 -11.36 -0.12 -7.67 16 25 H 0.06 0.47 8.09 -51.92 -0.42 0.05 16 26 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 28 H 0.41 0.47 9.06 45.56 0.41 0.88 16 29 H 0.17 1.47 7.72 -52.49 -0.41 1.07 16 30 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 31 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 32 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 315.55 15.07 4.76 4.76 Total: -1.00 -35.51 315.55 -3.85 -39.36 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -1.93 Total: 5.69 kcal Atomic # 6 Polarization: 24.57 SS G_CDS: -0.63 Total: 23.94 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 0.41 Total: -51.75 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.43 Total: -37.80 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.51 -3.85 -39.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770515391.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.171 kcal (2) G-P(sol) polarization free energy of solvation -35.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds