Wall clock time and date at job start Tue Mar 31 2020 03:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35467 * 117.00050 * 2 1 4 4 N 1.32409 * 119.07471 * 359.97426 * 3 2 1 5 5 C 1.32578 * 120.88805 * 180.02562 * 4 3 2 6 6 O 1.35509 * 120.45365 * 179.97438 * 5 4 3 7 7 C 1.39666 * 119.09471 * 359.74924 * 5 4 3 8 8 C 1.39145 * 118.31820 * 0.49247 * 7 5 4 9 9 C 1.48374 * 120.48805 * 179.78510 * 8 7 5 10 10 O 1.21393 * 120.00042 * 359.71920 * 9 8 7 11 11 O 1.34638 * 120.00025 * 179.44077 * 9 8 7 12 12 C 1.45205 * 117.00324 * 180.27072 * 11 9 8 13 13 C 1.50695 * 109.47702 * 180.02562 * 12 11 9 14 14 O 1.21295 * 119.99849 * 0.02562 * 13 12 11 15 15 N 1.34771 * 120.00260 * 180.02562 * 13 12 11 16 16 C 1.37102 * 119.99980 * 179.97438 * 15 13 12 17 17 H 1.07995 * 120.00071 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99727 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00092 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99739 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47140 * 60.00478 * 20 18 16 22 22 H 1.48501 * 109.46843 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46999 * 300.00350 * 20 18 16 24 24 N 1.32048 * 119.07773 * 179.97438 * 3 2 1 25 25 H 1.09008 * 109.47003 * 60.00538 * 1 2 3 26 26 H 1.08995 * 109.47157 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47419 * 300.00681 * 1 2 3 28 28 H 0.96707 * 114.00016 * 90.00060 * 6 5 4 29 29 H 1.08000 * 120.84550 * 180.27223 * 7 5 4 30 30 H 1.08997 * 109.46894 * 300.00959 * 12 11 9 31 31 H 1.09010 * 109.46220 * 60.00105 * 12 11 9 32 32 H 0.96999 * 119.99848 * 0.02562 * 15 13 12 33 33 H 0.97004 * 119.99735 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 7 1.3050 2.3057 -0.0005 5 6 1.8692 3.5054 -0.0010 6 8 1.1044 4.6241 -0.0021 7 6 3.2626 3.6006 0.0043 8 6 4.0047 2.4235 -0.0006 9 6 5.4877 2.4686 0.0000 10 8 6.0625 3.5378 -0.0005 11 8 6.1960 1.3236 0.0067 12 6 7.6431 1.4435 0.0129 13 6 8.2611 0.0691 0.0192 14 8 7.5518 -0.9148 0.0180 15 7 9.6019 -0.0668 0.0261 16 6 10.1642 -1.3172 0.0324 17 1 9.5326 -2.1933 0.0314 18 6 11.5466 -1.4573 0.0390 19 7 12.3150 -0.3913 0.0397 20 14 12.3126 -3.1610 0.0468 21 1 11.8827 -3.9026 -1.1658 22 1 13.7925 -3.0382 0.0538 23 1 11.8716 -3.8965 1.2591 24 7 3.3636 1.2549 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.8821 4.9494 0.8811 29 1 3.7519 4.5634 0.0084 30 1 7.9667 1.9830 -0.8772 31 1 7.9585 1.9883 0.9028 32 1 10.1692 0.7200 0.0274 33 1 13.2801 -0.4892 0.0447 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770515391.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:21 Heat of formation + Delta-G solvation = -155.275492 kcal Electronic energy + Delta-G solvation = -22691.576464 eV Core-core repulsion = 18718.713190 eV Total energy + Delta-G solvation = -3972.863274 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.81877 -41.61979 -40.08886 -39.81724 -38.47377 -37.71505 -36.03363 -34.71322 -33.41296 -32.52263 -30.28854 -28.57056 -27.24366 -26.21216 -25.14182 -22.92229 -21.46296 -20.64287 -20.17562 -20.03091 -18.88752 -18.30375 -18.01286 -17.90548 -17.55053 -17.28552 -16.78227 -16.45079 -16.19997 -15.84994 -15.81539 -15.60620 -14.78254 -14.71450 -13.98570 -13.74612 -13.54670 -13.44885 -12.97834 -12.93717 -12.48354 -12.36261 -12.30109 -12.13646 -12.11708 -12.05296 -11.95453 -11.56942 -10.77334 -10.50832 -10.33706 -10.10932 -8.51665 -6.02059 -1.04365 -0.41349 0.88606 1.01991 1.35024 1.38290 1.44017 1.55110 1.88072 2.00192 2.28291 2.34208 2.75990 3.07477 3.13803 3.26990 3.50418 3.86879 3.93265 4.08849 4.14661 4.22859 4.37468 4.37683 4.58260 4.72640 4.96160 5.25176 5.37740 5.78675 5.88991 6.22493 6.40919 6.50230 6.68295 7.03953 7.40485 7.95325 8.65125 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.026681 B = 0.002897 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.166473 B = 9663.003358 C =10689.068570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.302 6.302 3 C 0.519 3.481 4 N -0.566 5.566 5 C 0.421 3.579 6 O -0.460 6.460 7 C -0.198 4.198 8 C 0.188 3.812 9 C 0.525 3.475 10 O -0.487 6.487 11 O -0.322 6.322 12 C 0.067 3.933 13 C 0.434 3.566 14 O -0.617 6.617 15 N -0.556 5.556 16 C -0.340 4.340 17 H 0.082 0.918 18 C -0.007 4.007 19 N -0.914 5.914 20 Si 0.997 3.003 21 H -0.271 1.271 22 H -0.268 1.268 23 H -0.270 1.270 24 N -0.522 5.522 25 H 0.069 0.931 26 H 0.132 0.868 27 H 0.074 0.926 28 H 0.440 0.560 29 H 0.198 0.802 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.401 0.599 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.443 11.881 1.836 24.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.203 6.203 3 C 0.216 3.784 4 N -0.308 5.308 5 C 0.230 3.770 6 O -0.273 6.273 7 C -0.222 4.222 8 C 0.044 3.956 9 C 0.366 3.634 10 O -0.374 6.374 11 O -0.235 6.235 12 C -0.009 4.009 13 C 0.221 3.779 14 O -0.504 6.504 15 N -0.194 5.194 16 C -0.469 4.469 17 H 0.100 0.900 18 C -0.208 4.208 19 N -0.554 5.554 20 Si 0.819 3.181 21 H -0.196 1.196 22 H -0.192 1.192 23 H -0.196 1.196 24 N -0.253 5.253 25 H 0.087 0.913 26 H 0.150 0.850 27 H 0.092 0.908 28 H 0.306 0.694 29 H 0.215 0.785 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.236 0.764 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.839 10.387 1.269 24.217 hybrid contribution 1.006 0.479 0.401 1.184 sum -20.834 10.866 1.670 23.557 Atomic orbital electron populations 1.23391 0.72917 1.05882 1.03526 1.86201 1.26001 1.21648 1.86411 1.20246 0.84664 0.84861 0.88658 1.67565 1.42702 0.99322 1.21236 1.18895 0.86375 0.84888 0.86849 1.84725 1.70212 1.35391 1.36935 1.22958 0.93976 1.00934 1.04323 1.19977 0.90790 0.88619 0.96183 1.20747 0.87327 0.82012 0.73280 1.90852 1.70819 1.30422 1.45328 1.86723 1.20910 1.33704 1.82194 1.22749 0.76058 0.95770 1.06355 1.20110 0.83042 0.90504 0.84241 1.90566 1.61803 1.41479 1.56528 1.41694 1.04351 1.09219 1.64109 1.19677 0.90969 0.85414 1.50793 0.89964 1.26091 0.95766 1.03278 0.95630 1.69659 1.06077 1.30578 1.49100 0.84940 0.77199 0.76826 0.79099 1.19597 1.19223 1.19556 1.67506 1.09072 1.30092 1.18589 0.91267 0.85049 0.90767 0.69388 0.78492 0.86502 0.86364 0.76394 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.36 113.37 1.17 1.71 16 2 O -0.30 -7.75 10.56 -87.66 -0.93 -8.68 16 3 C 0.52 14.12 8.48 180.62 1.53 15.65 16 4 N -0.57 -12.01 9.22 -426.41 -3.93 -15.94 16 5 C 0.42 7.07 7.83 84.93 0.67 7.73 16 6 O -0.46 -4.39 13.57 -88.11 -1.20 -5.59 16 7 C -0.20 -3.73 9.67 22.83 0.22 -3.51 16 8 C 0.19 5.26 6.78 41.84 0.28 5.54 16 9 C 0.52 16.80 7.97 70.52 0.56 17.36 16 10 O -0.49 -15.00 16.20 20.18 0.33 -14.67 16 11 O -0.32 -12.68 9.61 -49.08 -0.47 -13.15 16 12 C 0.07 2.53 5.95 71.23 0.42 2.95 16 13 C 0.43 21.65 7.86 87.66 0.69 22.34 16 14 O -0.62 -36.58 16.08 15.72 0.25 -36.33 16 15 N -0.56 -28.70 5.29 -306.99 -1.62 -30.32 16 16 C -0.34 -19.30 9.68 84.04 0.81 -18.48 16 17 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 18 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 19 N -0.91 -48.55 13.05 21.66 0.28 -48.27 16 20 Si 1.00 42.45 29.55 68.60 2.03 44.48 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 24 N -0.52 -16.94 10.27 -302.95 -3.11 -20.06 16 25 H 0.07 0.93 8.09 -2.38 -0.02 0.91 16 26 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 0.91 8.09 -2.38 -0.02 0.89 16 28 H 0.44 -0.89 9.06 -74.05 -0.67 -1.56 16 29 H 0.20 2.69 7.72 -2.91 -0.02 2.67 16 30 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 31 H 0.12 3.78 8.14 -2.38 -0.02 3.76 16 32 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 33 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -78.55 315.55 -1.73 -80.28 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -0.19 Total: 16.85 kcal Atomic # 6 Polarization: 44.57 SS G_CDS: 6.83 Total: 51.40 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -8.38 Total: -114.59 kcal Atomic # 8 Polarization: -76.40 SS G_CDS: -2.01 Total: -78.42 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -78.55 -1.73 -80.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770515391.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.998 kcal (2) G-P(sol) polarization free energy of solvation -78.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds