Wall clock time and date at job start Tue Mar 31 2020 03:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00088 * 2 1 4 4 H 1.48498 * 109.47077 * 270.00379 * 3 2 1 5 5 H 1.48501 * 109.46934 * 30.00142 * 3 2 1 6 6 H 1.48500 * 109.47236 * 150.00534 * 3 2 1 7 7 C 1.37875 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99983 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99936 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47192 * 179.97438 * 9 7 2 11 11 C 1.34784 * 120.00066 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99806 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99827 * 180.02562 * 11 10 9 14 14 O 1.45201 * 109.46850 * 180.02562 * 13 11 10 15 15 C 1.34759 * 116.99914 * 179.97438 * 14 13 11 16 16 O 1.21522 * 120.00026 * 359.97438 * 15 14 13 17 17 C 1.47313 * 119.99703 * 179.97438 * 15 14 13 18 18 C 1.39877 * 120.11911 * 0.02562 * 17 15 14 19 19 C 1.37575 * 119.92849 * 180.23067 * 18 17 15 20 20 C 1.39123 * 120.16736 * 359.46966 * 19 18 17 21 21 O 1.35695 * 119.87905 * 180.25682 * 20 19 18 22 22 C 1.38845 * 120.23335 * 0.54779 * 20 19 18 23 23 C 1.38037 * 120.06896 * 359.71138 * 22 20 19 24 24 F 1.35096 * 120.08431 * 179.97438 * 23 22 20 25 25 H 0.97000 * 119.99668 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46809 * 59.99801 * 9 7 2 27 27 H 1.09000 * 109.47007 * 299.99888 * 9 7 2 28 28 H 0.97003 * 120.00273 * 359.97438 * 10 9 7 29 29 H 1.08991 * 109.47230 * 59.99729 * 13 11 10 30 30 H 1.09000 * 109.47120 * 299.99608 * 13 11 10 31 31 H 1.08002 * 120.03050 * 359.94601 * 18 17 15 32 32 H 1.08002 * 119.91060 * 179.74026 * 19 18 17 33 33 H 0.96703 * 114.00096 * 270.28894 * 21 20 19 34 34 H 1.07994 * 119.96409 * 179.72597 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7538 -4.8834 -0.0025 12 8 0.5614 -5.1050 -0.0017 13 6 2.7332 -6.0288 -0.0032 14 8 2.0072 -7.2862 -0.0045 15 6 2.7411 -8.4164 -0.0058 16 8 3.9547 -8.3528 -0.0063 17 6 2.0723 -9.7290 -0.0067 18 6 0.6756 -9.8050 -0.0067 19 6 0.0551 -11.0329 -0.0027 20 6 0.8132 -12.1994 -0.0097 21 8 0.1950 -13.4073 -0.0110 22 6 2.2000 -12.1319 -0.0094 23 6 2.8327 -10.9051 -0.0081 24 9 4.1821 -10.8391 -0.0072 25 1 -0.4849 0.8401 0.0004 26 1 0.6241 -2.5566 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 3.1568 -3.4354 -0.0028 29 1 3.3598 -5.9715 0.8867 30 1 3.3598 -5.9705 -0.8932 31 1 0.0850 -8.9008 -0.0052 32 1 -1.0234 -11.0912 0.0016 33 1 0.0157 -13.7583 0.8721 34 1 2.7842 -13.0402 -0.0104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773564421.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:23 Heat of formation + Delta-G solvation = -181.634510 kcal Electronic energy + Delta-G solvation = -22366.398787 eV Core-core repulsion = 18372.472539 eV Total energy + Delta-G solvation = -3993.926248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.29596 -40.76627 -39.87589 -38.72743 -37.06460 -36.33715 -34.28126 -32.43930 -31.49770 -30.81026 -29.09641 -26.73496 -24.44331 -23.40441 -22.59402 -21.36054 -19.98127 -19.26705 -18.42944 -17.68490 -17.02066 -16.87114 -16.74891 -16.43503 -15.93827 -15.65003 -15.31425 -15.15088 -14.67053 -14.61059 -14.23994 -14.14924 -13.48978 -13.10160 -12.95926 -12.50057 -12.39732 -12.24931 -12.01845 -11.80047 -11.32666 -11.03532 -10.93993 -10.75497 -10.74738 -10.36356 -9.55010 -9.46343 -9.23362 -9.22594 -8.80462 -8.02105 -6.21631 -4.29063 0.03439 0.64081 2.12304 2.24243 3.04413 3.14025 3.22064 3.28382 3.30665 3.35148 3.82281 3.88615 4.21345 4.30546 4.45235 4.53044 4.70566 5.04477 5.11308 5.14563 5.20181 5.30019 5.36517 5.52054 5.62542 5.72892 6.09611 6.19738 6.97952 7.19352 7.26972 7.43028 7.51748 7.60346 7.89663 8.46552 8.68195 8.92713 9.37424 10.88493 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.037527 B = 0.002457 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.954793 B =11391.348619 C =12114.312718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.501 3.499 12 O -0.535 6.535 13 C 0.050 3.950 14 O -0.323 6.323 15 C 0.507 3.493 16 O -0.496 6.496 17 C -0.172 4.172 18 C -0.010 4.010 19 C -0.170 4.170 20 C 0.174 3.826 21 O -0.492 6.492 22 C -0.201 4.201 23 C 0.184 3.816 24 F -0.110 7.110 25 H 0.267 0.733 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.393 0.607 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.161 0.839 32 H 0.147 0.853 33 H 0.401 0.599 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 -24.802 1.702 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.283 3.717 12 O -0.412 6.412 13 C -0.027 4.027 14 O -0.238 6.238 15 C 0.352 3.648 16 O -0.385 6.385 17 C -0.174 4.174 18 C -0.028 4.028 19 C -0.189 4.189 20 C 0.129 3.871 21 O -0.304 6.304 22 C -0.220 4.220 23 C 0.164 3.836 24 F -0.088 7.088 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.226 0.774 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.179 0.821 32 H 0.165 0.835 33 H 0.260 0.740 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.551 -24.687 1.107 24.843 hybrid contribution 1.280 0.989 0.462 1.682 sum 3.831 -23.698 1.569 24.057 Atomic orbital electron populations 1.69972 1.06121 1.27432 1.48677 1.24953 0.94940 0.99507 0.94590 0.86386 0.79607 0.82487 0.78269 1.20414 1.20969 1.19710 1.21207 0.93347 0.90288 1.53534 0.91749 1.19183 0.88153 0.81513 0.98048 1.46368 1.11581 1.05316 1.72319 1.19851 0.89066 0.83965 0.78771 1.90700 1.16285 1.84560 1.49694 1.22913 0.94444 0.80531 1.04849 1.86576 1.39795 1.13790 1.83646 1.20747 0.85592 0.84854 0.73652 1.90913 1.14371 1.87893 1.45314 1.19213 0.94544 0.89594 1.14023 1.21453 0.92046 0.99293 0.90034 1.21542 1.01715 0.91100 1.04496 1.18417 0.89205 0.85390 0.94134 1.84748 1.79279 1.32223 1.34187 1.21304 0.95044 0.97187 1.08502 1.17387 0.77462 0.92295 0.96476 1.91627 1.27657 1.97015 1.92504 0.92357 0.95228 0.95213 0.77365 0.88284 0.88292 0.82150 0.83492 0.74017 0.83094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.63 13.29 55.43 0.74 -24.90 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.55 -14.47 9.28 -34.44 -0.32 -14.79 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.48 5.43 -5.20 -0.03 6.45 16 10 N -0.71 -14.33 5.55 -61.47 -0.34 -14.67 16 11 C 0.50 9.78 7.91 -10.98 -0.09 9.70 16 12 O -0.53 -12.63 16.50 -14.10 -0.23 -12.87 16 13 C 0.05 0.75 5.95 36.01 0.21 0.96 16 14 O -0.32 -5.00 9.00 -47.33 -0.43 -5.43 16 15 C 0.51 7.32 7.88 34.42 0.27 7.59 16 16 O -0.50 -8.09 15.12 -19.28 -0.29 -8.38 16 17 C -0.17 -2.00 5.88 -104.91 -0.62 -2.62 16 18 C -0.01 -0.10 9.60 -39.21 -0.38 -0.47 16 19 C -0.17 -1.25 9.96 -39.49 -0.39 -1.65 16 20 C 0.17 1.24 6.71 -39.03 -0.26 0.98 16 21 O -0.49 -2.70 13.48 -18.79 -0.25 -2.95 16 22 C -0.20 -1.61 9.95 -39.43 -0.39 -2.00 16 23 C 0.18 1.98 7.28 -38.97 -0.28 1.70 16 24 F -0.11 -1.39 15.54 2.25 0.03 -1.36 16 25 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.39 6.71 8.32 -40.82 -0.34 6.37 16 29 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.16 1.53 7.60 -52.49 -0.40 1.13 16 32 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.40 0.16 9.06 45.56 0.41 0.57 16 34 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 320.20 15.07 4.83 4.83 Total: -1.00 -34.84 320.20 -5.74 -40.58 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -2.40 Total: 2.14 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -2.37 Total: 7.49 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.40 Total: -39.57 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -1.20 Total: -29.63 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.03 Total: -1.36 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.84 -5.74 -40.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773564421.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.058 kcal (2) G-P(sol) polarization free energy of solvation -34.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds