Wall clock time and date at job start Tue Mar 31 2020 03:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86802 * 119.99802 * 2 1 4 4 H 1.48504 * 109.47291 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47422 * 300.00152 * 3 2 1 6 6 H 1.48498 * 109.47237 * 60.00227 * 3 2 1 7 7 C 1.38950 * 120.00414 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99974 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99755 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00020 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00068 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00322 * 180.02562 * 10 9 7 13 13 O 1.45199 * 109.47653 * 180.02562 * 12 10 9 14 14 C 1.34705 * 117.00181 * 179.97438 * 13 12 10 15 15 O 1.21468 * 120.00176 * 0.02562 * 14 13 12 16 16 C 1.47740 * 120.00033 * 180.02562 * 14 13 12 17 17 C 1.39651 * 120.13462 * 359.97438 * 16 14 13 18 18 C 1.37930 * 119.89716 * 180.02562 * 17 16 14 19 19 C 1.38352 * 120.17586 * 359.72666 * 18 17 16 20 20 C 1.50699 * 119.85814 * 180.27641 * 19 18 17 21 21 O 1.42903 * 109.47398 * 0.27312 * 20 19 18 22 22 C 1.38559 * 120.28139 * 0.54742 * 19 18 17 23 23 F 1.35104 * 119.95081 * 179.72260 * 22 19 18 24 24 C 1.38198 * 120.09645 * 359.45504 * 22 19 18 25 25 H 0.96996 * 120.00400 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00183 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47399 * 60.00164 * 12 10 9 28 28 H 1.09002 * 109.47358 * 300.00547 * 12 10 9 29 29 H 1.07996 * 120.04941 * 0.04185 * 17 16 14 30 30 H 1.07997 * 119.91112 * 180.02562 * 18 17 16 31 31 H 1.09005 * 109.47117 * 120.27313 * 20 19 18 32 32 H 1.09004 * 109.47307 * 240.27536 * 20 19 18 33 33 H 0.96692 * 114.00258 * 179.97438 * 21 20 19 34 34 H 1.07991 * 120.08934 * 180.25118 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5577 -0.0016 11 8 3.2103 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 8 2.1875 -5.9665 -0.0027 14 6 1.6727 -7.2113 -0.0027 15 8 0.4684 -7.3705 -0.0028 16 6 2.5726 -8.3829 -0.0026 17 6 3.9575 -8.2032 -0.0030 18 6 4.7932 -9.3005 -0.0035 19 6 4.2631 -10.5784 0.0022 20 6 5.1828 -11.7722 0.0080 21 8 6.5408 -11.3273 0.0128 22 6 2.8902 -10.7653 -0.0031 23 9 2.3797 -12.0162 -0.0031 24 6 2.0422 -9.6740 -0.0026 25 1 -0.4850 0.8400 0.0004 26 1 0.3535 -2.3907 -0.0005 27 1 0.6170 -4.9201 -0.8919 28 1 0.6176 -4.9213 0.8880 29 1 4.3735 -7.2065 -0.0028 30 1 5.8642 -9.1618 -0.0034 31 1 4.9938 -12.3721 0.8982 32 1 5.0012 -12.3751 -0.8818 33 1 7.1895 -12.0443 0.0170 34 1 0.9722 -9.8198 -0.0026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773633155.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:43 Heat of formation + Delta-G solvation = -211.171576 kcal Electronic energy + Delta-G solvation = -22399.606799 eV Core-core repulsion = 18404.399728 eV Total energy + Delta-G solvation = -3995.207072 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.08195 -41.85550 -40.34668 -39.79915 -37.75320 -37.43105 -36.04036 -33.44403 -33.17651 -31.85111 -30.19893 -27.95854 -26.52110 -24.16091 -23.86757 -22.02686 -21.45207 -20.08784 -19.65045 -18.75032 -18.00160 -17.79978 -17.77254 -17.11072 -16.96907 -16.95379 -16.74022 -16.28298 -15.76964 -15.76642 -15.64364 -15.11652 -14.78567 -14.42453 -14.12094 -13.78695 -13.72320 -13.56809 -13.28472 -12.94493 -12.53725 -12.46750 -12.40526 -12.10597 -11.93623 -11.83184 -11.58880 -11.34111 -10.52780 -10.16137 -10.12319 -9.87037 -8.52844 -6.03395 -0.67700 -0.01036 1.20058 1.22009 1.34701 1.44207 1.58725 1.85931 2.28819 2.40967 2.85419 3.01543 3.12823 3.14825 3.45364 3.62177 3.82008 3.93272 3.99085 4.09434 4.13443 4.20589 4.37477 4.45149 4.55829 4.77434 4.92803 5.04157 5.14802 5.17043 5.37183 5.59244 5.88401 6.40753 6.51658 6.89096 7.02456 7.39076 7.92208 8.64452 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.032298 B = 0.002620 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.714543 B =10684.395475 C =11530.655371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.085 0.915 9 N -0.558 5.558 10 C 0.438 3.562 11 O -0.616 6.616 12 C 0.071 3.929 13 O -0.334 6.334 14 C 0.509 3.491 15 O -0.524 6.524 16 C -0.111 4.111 17 C -0.067 4.067 18 C -0.081 4.081 19 C -0.087 4.087 20 C 0.118 3.882 21 O -0.582 6.582 22 C 0.089 3.911 23 F -0.129 7.129 24 C -0.089 4.089 25 H 0.281 0.719 26 H 0.400 0.600 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.145 0.855 30 H 0.164 0.836 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.408 0.592 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.959 -23.693 0.009 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.103 0.897 9 N -0.195 5.195 10 C 0.224 3.776 11 O -0.502 6.502 12 C -0.006 4.006 13 O -0.249 6.249 14 C 0.355 3.645 15 O -0.415 6.415 16 C -0.112 4.112 17 C -0.086 4.086 18 C -0.098 4.098 19 C -0.088 4.088 20 C 0.040 3.960 21 O -0.392 6.392 22 C 0.070 3.930 23 F -0.108 7.108 24 C -0.107 4.107 25 H 0.090 0.910 26 H 0.235 0.765 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.163 0.837 30 H 0.181 0.819 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.260 0.740 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.956 -23.022 0.007 24.050 hybrid contribution -0.551 0.329 0.003 0.642 sum 6.405 -22.693 0.011 23.579 Atomic orbital electron populations 1.69672 1.06975 1.29688 1.49248 1.26134 0.96581 1.02621 0.95672 0.84795 0.78111 0.76559 0.78414 1.19482 1.19476 1.19487 1.19759 0.92954 0.83306 1.50519 0.89691 1.41738 1.09589 1.04171 1.64006 1.20033 0.88077 0.85280 0.84184 1.90528 1.15339 1.87659 1.56704 1.22599 0.90110 0.82220 1.05692 1.86572 1.40373 1.14479 1.83428 1.21458 0.87243 0.83506 0.72315 1.90811 1.16682 1.86970 1.47042 1.18787 0.93256 0.89854 1.09340 1.21770 0.91406 1.01363 0.94029 1.21040 1.01840 0.89631 0.97325 1.20375 0.91889 0.97572 0.98996 1.20862 0.81163 0.91244 1.02693 1.86377 1.15520 1.39450 1.97855 1.16980 0.90747 0.79401 1.05867 1.91526 1.87580 1.37605 1.94064 1.21131 1.01710 0.89583 0.98319 0.90962 0.76538 0.87264 0.87274 0.83708 0.81890 0.89749 0.89743 0.74018 0.82752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.55 13.05 21.66 0.28 -48.27 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 3 Si 1.00 41.91 29.55 68.60 2.03 43.93 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 7 C -0.34 -18.80 9.68 84.04 0.81 -17.99 16 8 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.56 -28.49 5.29 -306.99 -1.62 -30.11 16 10 C 0.44 21.26 7.86 87.66 0.69 21.95 16 11 O -0.62 -34.66 16.08 15.72 0.25 -34.41 16 12 C 0.07 2.67 5.95 71.23 0.42 3.09 16 13 O -0.33 -12.44 9.01 -49.76 -0.45 -12.89 16 14 C 0.51 16.63 7.90 70.33 0.56 17.19 16 15 O -0.52 -18.42 16.14 19.94 0.32 -18.10 16 16 C -0.11 -2.96 5.87 -20.10 -0.12 -3.07 16 17 C -0.07 -1.62 9.62 22.54 0.22 -1.40 16 18 C -0.08 -1.57 9.36 22.22 0.21 -1.37 16 19 C -0.09 -1.52 5.89 -19.76 -0.12 -1.63 16 20 C 0.12 1.26 7.00 71.24 0.50 1.76 16 21 O -0.58 -6.10 12.12 -148.98 -1.81 -7.91 16 22 C 0.09 1.73 7.24 22.34 0.16 1.89 16 23 F -0.13 -2.34 16.79 44.97 0.75 -1.58 16 24 C -0.09 -2.02 9.57 22.58 0.22 -1.80 16 25 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 26 H 0.40 19.26 7.90 -92.71 -0.73 18.52 16 27 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 28 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 29 H 0.15 3.74 7.61 -2.91 -0.02 3.72 16 30 H 0.16 2.83 6.99 -2.91 -0.02 2.81 16 31 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.41 0.27 9.12 -74.06 -0.68 -0.41 16 34 H 0.15 3.39 7.65 -2.92 -0.02 3.36 16 Total: -1.00 -70.59 318.07 3.56 -67.03 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -0.22 Total: 23.72 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 4.02 Total: 18.59 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -1.34 Total: -78.38 kcal Atomic # 8 Polarization: -71.62 SS G_CDS: -1.68 Total: -73.30 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.75 Total: -1.58 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -70.59 3.56 -67.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773633155.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.144 kcal (2) G-P(sol) polarization free energy of solvation -70.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds