Wall clock time and date at job start Tue Mar 31 2020 03:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00033 * 2 1 4 4 H 1.48506 * 109.47136 * 85.07709 * 3 2 1 5 5 H 1.48494 * 109.47263 * 205.07916 * 3 2 1 6 6 H 1.48499 * 109.47051 * 325.08356 * 3 2 1 7 7 C 1.39940 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00373 * 16.47888 * 7 2 1 9 9 C 1.41400 * 119.99849 * 196.47799 * 7 2 1 10 10 C 1.40732 * 120.24150 * 207.20446 * 9 7 2 11 11 C 1.37600 * 119.74197 * 179.67040 * 10 9 7 12 12 C 1.38661 * 120.24679 * 0.62760 * 11 10 9 13 13 C 1.38607 * 120.50464 * 359.66824 * 12 11 10 14 14 S 1.76196 * 119.88096 * 180.02562 * 13 12 11 15 15 O 1.42103 * 106.39939 * 23.52054 * 14 13 12 16 16 O 1.42099 * 106.40180 * 156.43720 * 14 13 12 17 17 N 1.65595 * 107.21953 * 269.98146 * 14 13 12 18 18 C 1.47067 * 136.05834 * 89.99801 * 17 14 13 19 19 C 1.53505 * 87.98493 * 152.84354 * 18 17 14 20 20 C 1.47072 * 136.05576 * 269.62842 * 17 14 13 21 21 H 1.08993 * 113.47042 * 92.37772 * 20 17 14 22 22 C 1.52998 * 113.46542 * 321.93141 * 20 17 14 23 23 O 1.42895 * 109.47529 * 295.00249 * 22 20 17 24 24 C 1.37645 * 120.24541 * 0.02562 * 13 12 11 25 25 H 0.97003 * 120.00263 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.13271 * 359.97438 * 10 9 7 27 27 H 1.08005 * 119.87910 * 180.31471 * 11 10 9 28 28 H 1.08000 * 119.74994 * 179.69115 * 12 11 10 29 29 H 1.09001 * 113.46603 * 267.62109 * 18 17 14 30 30 H 1.09003 * 113.46698 * 38.06470 * 18 17 14 31 31 H 1.08995 * 114.20575 * 139.65389 * 19 18 17 32 32 H 1.09001 * 114.20388 * 272.28245 * 19 18 17 33 33 H 1.09010 * 109.47219 * 55.00409 * 22 20 17 34 34 H 1.09000 * 109.47323 * 174.99836 * 22 20 17 35 35 H 0.96705 * 114.00074 * 179.97438 * 23 22 20 36 36 H 1.07993 * 120.12737 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3857 2.1065 1.3950 5 1 3.5879 1.4124 -0.5934 6 1 1.4955 2.6204 -0.8014 7 6 2.0079 -1.2119 0.0005 8 1 1.5012 -2.1282 -0.2644 9 6 3.3783 -1.2369 0.3479 10 6 4.2210 -2.2412 -0.1639 11 6 5.5545 -2.2517 0.1755 12 6 6.0658 -1.2856 1.0285 13 6 5.2438 -0.2954 1.5435 14 16 5.9110 0.9246 2.6255 15 8 7.3037 0.9867 2.3501 16 8 5.0505 2.0520 2.5383 17 7 5.7651 0.3432 4.1692 18 6 6.5918 -0.4636 5.0795 19 6 5.8887 0.2362 6.2510 20 6 4.7546 0.4119 5.2356 21 1 4.0515 -0.4208 5.2217 22 6 4.0603 1.7720 5.3302 23 8 5.0125 2.7676 5.7097 24 6 3.9081 -0.2617 1.2126 25 1 -0.4851 0.8401 0.0004 26 1 3.8238 -2.9977 -0.8243 27 1 6.2043 -3.0184 -0.2201 28 1 7.1126 -1.3044 1.2935 29 1 6.3830 -1.5319 5.0235 30 1 7.6562 -0.2375 5.0145 31 1 5.6467 -0.4227 7.0848 32 1 6.3590 1.1692 6.5615 33 1 3.6319 2.0295 4.3615 34 1 3.2676 1.7241 6.0768 35 1 4.6413 3.6571 5.7888 36 1 3.2693 0.5104 1.6152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907829362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:46 Heat of formation + Delta-G solvation = -63.711166 kcal Electronic energy + Delta-G solvation = -22718.577357 eV Core-core repulsion = 19295.977825 eV Total energy + Delta-G solvation = -3422.599532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.59416 -37.94242 -36.72177 -36.03381 -35.31229 -33.79062 -30.72365 -30.22221 -28.86294 -28.27258 -25.37728 -23.02827 -22.23161 -21.30372 -21.00799 -18.46057 -17.82654 -17.46588 -16.75479 -16.62565 -15.80590 -15.55882 -14.98402 -14.78379 -14.66656 -13.87456 -13.58261 -13.33155 -13.21606 -12.74216 -12.61763 -12.34954 -12.24136 -11.97295 -11.81158 -11.58854 -11.47704 -11.32280 -10.96397 -10.86801 -10.77993 -10.42855 -10.36011 -9.97884 -9.84347 -9.69448 -9.29819 -8.87310 -8.31342 -7.86874 -7.09899 -4.67111 0.86852 1.89071 2.44227 3.11258 3.18550 3.27291 3.35848 3.90324 4.16920 4.21102 4.33666 4.46442 4.64562 4.88131 5.04346 5.17484 5.34352 5.36725 5.54906 5.60952 5.72347 5.80511 5.87919 5.96190 6.12762 6.22865 6.30992 6.36971 6.63350 6.67970 6.88260 7.08998 7.13547 7.39668 7.49817 7.68992 7.84904 8.12662 8.40214 8.59914 9.90975 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.007253 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.326476 B = 3859.340933 C = 4628.208524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.085 3.915 3 Si 0.888 3.112 4 H -0.249 1.249 5 H -0.244 1.244 6 H -0.284 1.284 7 C -0.442 4.442 8 H 0.095 0.905 9 C 0.074 3.926 10 C -0.166 4.166 11 C -0.099 4.099 12 C -0.155 4.155 13 C -0.624 4.624 14 S 2.706 3.294 15 O -0.967 6.967 16 O -0.959 6.959 17 N -1.030 6.030 18 C 0.124 3.876 19 C -0.139 4.139 20 C 0.153 3.847 21 H 0.106 0.894 22 C 0.055 3.945 23 O -0.565 6.565 24 C -0.143 4.143 25 H 0.288 0.712 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.378 0.622 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.526 0.863 11.671 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.135 4.135 3 Si 0.713 3.287 4 H -0.174 1.174 5 H -0.167 1.167 6 H -0.212 1.212 7 C -0.470 4.470 8 H 0.113 0.887 9 C 0.070 3.930 10 C -0.185 4.185 11 C -0.119 4.119 12 C -0.176 4.176 13 C -0.714 4.714 14 S 2.804 3.196 15 O -0.958 6.958 16 O -0.950 6.950 17 N -0.868 5.868 18 C -0.001 4.001 19 C -0.178 4.178 20 C 0.046 3.954 21 H 0.124 0.876 22 C -0.024 4.024 23 O -0.370 6.370 24 C -0.164 4.164 25 H 0.099 0.901 26 H 0.126 0.874 27 H 0.122 0.878 28 H 0.128 0.872 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.225 0.775 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.023 1.340 11.180 13.271 hybrid contribution -0.678 0.409 -0.557 0.968 sum 6.346 1.748 10.623 12.497 Atomic orbital electron populations 1.69656 1.07980 1.30612 1.34062 1.26161 0.94845 1.01730 0.90799 0.86673 0.81231 0.79941 0.80812 1.17382 1.16727 1.21155 1.19517 0.92252 0.96145 1.39080 0.88711 1.17808 0.93459 0.91400 0.90354 1.21266 0.92963 1.01757 1.02539 1.20762 0.95438 0.97715 0.97953 1.20084 0.97514 0.96655 1.03304 1.30149 1.04241 1.18002 1.19020 1.01313 0.73342 0.74046 0.70945 1.93501 1.31767 1.86898 1.83627 1.93516 1.68012 1.47886 1.85590 1.60268 1.30327 1.68353 1.27829 1.22414 0.96328 0.95273 0.86124 1.23371 0.96860 1.02015 0.95598 1.22239 0.91986 0.96396 0.84753 0.87613 1.22471 0.90811 0.88487 1.00622 1.86405 1.38450 1.20115 1.92073 1.20770 0.92774 1.01435 1.01426 0.90091 0.87411 0.87768 0.87207 0.90034 0.90282 0.90026 0.87586 0.91057 0.92329 0.77508 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.86 13.93 55.55 0.77 -20.09 16 2 C 0.08 2.21 5.44 -17.34 -0.09 2.12 16 3 Si 0.89 21.42 24.41 -169.99 -4.15 17.27 16 4 H -0.25 -5.92 6.69 56.52 0.38 -5.54 16 5 H -0.24 -6.13 6.69 56.52 0.38 -5.76 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.44 -11.68 9.60 -37.74 -0.36 -12.04 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 C 0.07 1.86 5.18 -106.82 -0.55 1.30 16 10 C -0.17 -3.74 9.80 -38.87 -0.38 -4.12 16 11 C -0.10 -2.05 10.02 -39.66 -0.40 -2.45 16 12 C -0.15 -3.30 9.53 -39.29 -0.37 -3.67 16 13 C -0.62 -14.07 5.97 -39.66 -0.24 -14.30 16 14 S 2.71 55.86 6.27 -107.50 -0.67 55.19 16 15 O -0.97 -21.33 17.27 -57.17 -0.99 -22.32 16 16 O -0.96 -21.59 15.23 -57.17 -0.87 -22.46 16 17 N -1.03 -16.72 4.08 -118.02 -0.48 -17.20 16 18 C 0.12 1.52 8.73 -8.50 -0.07 1.44 16 19 C -0.14 -1.46 7.83 -26.35 -0.21 -1.67 16 20 C 0.15 2.01 4.64 -72.52 -0.34 1.68 16 21 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 22 C 0.05 0.73 6.84 37.16 0.25 0.98 16 23 O -0.57 -7.36 12.10 -35.23 -0.43 -7.79 16 24 C -0.14 -3.51 6.53 -38.87 -0.25 -3.77 16 25 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 26 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 27 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 28 H 0.11 2.12 7.60 -52.49 -0.40 1.73 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.11 1.21 6.90 -51.93 -0.36 0.85 16 33 H 0.07 1.15 6.65 -51.92 -0.35 0.81 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.38 3.42 9.12 45.56 0.42 3.83 16 36 H 0.11 2.82 3.82 -52.49 -0.20 2.62 16 LS Contribution 311.14 15.07 4.69 4.69 Total: -1.00 -32.31 311.14 -8.59 -40.90 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -3.45 Total: 6.30 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: -3.02 Total: -34.50 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.29 Total: -37.29 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -2.28 Total: -52.57 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.15 Total: 17.27 kcal Atomic # 16 Polarization: 55.86 SS G_CDS: -0.67 Total: 55.19 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.31 -8.59 -40.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907829362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.806 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds