Wall clock time and date at job start Tue Mar 31 2020 03:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00033 * 2 1 4 4 H 1.48506 * 109.47136 * 85.07709 * 3 2 1 5 5 H 1.48494 * 109.47263 * 205.07916 * 3 2 1 6 6 H 1.48499 * 109.47051 * 325.08356 * 3 2 1 7 7 C 1.39940 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00373 * 16.47888 * 7 2 1 9 9 C 1.41400 * 119.99849 * 196.47799 * 7 2 1 10 10 C 1.40732 * 120.24150 * 207.20446 * 9 7 2 11 11 C 1.37600 * 119.74197 * 179.67040 * 10 9 7 12 12 C 1.38661 * 120.24679 * 0.62760 * 11 10 9 13 13 C 1.38607 * 120.50464 * 359.66824 * 12 11 10 14 14 S 1.76196 * 119.88096 * 180.02562 * 13 12 11 15 15 O 1.42103 * 106.39939 * 23.52054 * 14 13 12 16 16 O 1.42099 * 106.40180 * 156.43720 * 14 13 12 17 17 N 1.65595 * 107.21953 * 269.98146 * 14 13 12 18 18 C 1.47067 * 136.05834 * 89.99801 * 17 14 13 19 19 C 1.53505 * 87.98493 * 152.84354 * 18 17 14 20 20 C 1.47072 * 136.05576 * 269.62842 * 17 14 13 21 21 H 1.08993 * 113.47042 * 92.37772 * 20 17 14 22 22 C 1.52998 * 113.46542 * 321.93141 * 20 17 14 23 23 O 1.42895 * 109.47529 * 295.00249 * 22 20 17 24 24 C 1.37645 * 120.24541 * 0.02562 * 13 12 11 25 25 H 0.97003 * 120.00263 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.13271 * 359.97438 * 10 9 7 27 27 H 1.08005 * 119.87910 * 180.31471 * 11 10 9 28 28 H 1.08000 * 119.74994 * 179.69115 * 12 11 10 29 29 H 1.09001 * 113.46603 * 267.62109 * 18 17 14 30 30 H 1.09003 * 113.46698 * 38.06470 * 18 17 14 31 31 H 1.08995 * 114.20575 * 139.65389 * 19 18 17 32 32 H 1.09001 * 114.20388 * 272.28245 * 19 18 17 33 33 H 1.09010 * 109.47219 * 55.00409 * 22 20 17 34 34 H 1.09000 * 109.47323 * 174.99836 * 22 20 17 35 35 H 0.96705 * 114.00074 * 179.97438 * 23 22 20 36 36 H 1.07993 * 120.12737 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3857 2.1065 1.3950 5 1 3.5879 1.4124 -0.5934 6 1 1.4955 2.6204 -0.8014 7 6 2.0079 -1.2119 0.0005 8 1 1.5012 -2.1282 -0.2644 9 6 3.3783 -1.2369 0.3479 10 6 4.2210 -2.2412 -0.1639 11 6 5.5545 -2.2517 0.1755 12 6 6.0658 -1.2856 1.0285 13 6 5.2438 -0.2954 1.5435 14 16 5.9110 0.9246 2.6255 15 8 7.3037 0.9867 2.3501 16 8 5.0505 2.0520 2.5383 17 7 5.7651 0.3432 4.1692 18 6 6.5918 -0.4636 5.0795 19 6 5.8887 0.2362 6.2510 20 6 4.7546 0.4119 5.2356 21 1 4.0515 -0.4208 5.2217 22 6 4.0603 1.7720 5.3302 23 8 5.0125 2.7676 5.7097 24 6 3.9081 -0.2617 1.2126 25 1 -0.4851 0.8401 0.0004 26 1 3.8238 -2.9977 -0.8243 27 1 6.2043 -3.0184 -0.2201 28 1 7.1126 -1.3044 1.2935 29 1 6.3830 -1.5319 5.0235 30 1 7.6562 -0.2375 5.0145 31 1 5.6467 -0.4227 7.0848 32 1 6.3590 1.1692 6.5615 33 1 3.6319 2.0295 4.3615 34 1 3.2676 1.7241 6.0768 35 1 4.6413 3.6571 5.7888 36 1 3.2693 0.5104 1.6152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907829362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:46 Heat of formation + Delta-G solvation = -89.763438 kcal Electronic energy + Delta-G solvation = -22719.707068 eV Core-core repulsion = 19295.977825 eV Total energy + Delta-G solvation = -3423.729244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.61750 -39.74217 -38.35957 -37.08941 -36.93561 -35.69718 -32.57675 -31.97678 -29.95153 -29.29915 -27.26627 -24.00271 -23.98690 -23.07096 -22.15052 -20.01166 -19.38590 -18.82671 -18.46048 -17.82574 -17.21007 -17.01792 -16.63153 -16.24769 -16.06237 -15.60914 -15.14509 -14.73890 -14.62476 -14.35658 -14.17637 -13.77041 -13.62115 -13.27929 -13.26844 -13.17286 -13.06037 -12.84108 -12.82650 -12.74773 -12.24351 -11.90097 -11.81080 -11.46820 -11.31632 -11.15472 -10.87506 -10.21812 -9.94527 -9.70512 -9.05155 -6.64822 -0.66872 0.11503 0.61751 1.19973 1.23751 1.31644 1.92213 1.96488 2.38191 2.69785 3.10975 3.25869 3.31555 3.65866 3.83989 4.05534 4.09766 4.24838 4.40686 4.44958 4.48107 4.60930 4.65389 4.67630 4.73298 4.80688 5.02655 5.07926 5.12737 5.28428 5.35317 5.40055 5.61471 5.65530 5.67103 6.03584 6.15565 6.50991 6.66781 6.87357 8.02290 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.007253 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.326476 B = 3859.340933 C = 4628.208524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.065 3.935 3 Si 0.920 3.080 4 H -0.252 1.252 5 H -0.263 1.263 6 H -0.267 1.267 7 C -0.473 4.473 8 H 0.075 0.925 9 C 0.053 3.947 10 C -0.167 4.167 11 C -0.096 4.096 12 C -0.142 4.142 13 C -0.640 4.640 14 S 2.718 3.282 15 O -0.986 6.986 16 O -0.987 6.987 17 N -1.037 6.037 18 C 0.115 3.885 19 C -0.114 4.114 20 C 0.137 3.863 21 H 0.123 0.877 22 C 0.051 3.949 23 O -0.577 6.577 24 C -0.162 4.162 25 H 0.297 0.703 26 H 0.124 0.876 27 H 0.150 0.850 28 H 0.136 0.864 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.034 0.966 34 H 0.092 0.908 35 H 0.393 0.607 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.524 -0.094 13.477 15.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.153 4.153 3 Si 0.745 3.255 4 H -0.177 1.177 5 H -0.188 1.188 6 H -0.193 1.193 7 C -0.502 4.502 8 H 0.093 0.907 9 C 0.050 3.950 10 C -0.186 4.186 11 C -0.115 4.115 12 C -0.163 4.163 13 C -0.729 4.729 14 S 2.813 3.187 15 O -0.976 6.976 16 O -0.977 6.977 17 N -0.878 5.878 18 C -0.009 4.009 19 C -0.154 4.154 20 C 0.032 3.968 21 H 0.141 0.859 22 C -0.028 4.028 23 O -0.385 6.385 24 C -0.182 4.182 25 H 0.108 0.892 26 H 0.142 0.858 27 H 0.168 0.832 28 H 0.153 0.847 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.141 0.859 32 H 0.117 0.883 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.242 0.758 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.008 0.383 12.960 15.788 hybrid contribution -1.059 0.606 -0.983 1.567 sum 7.949 0.990 11.977 14.409 Atomic orbital electron populations 1.69649 1.08367 1.31492 1.36203 1.26443 0.95191 1.02825 0.90794 0.86189 0.79711 0.78991 0.80618 1.17708 1.18801 1.19314 1.19498 0.93328 0.95724 1.41629 0.90663 1.18021 0.93429 0.92687 0.90905 1.21597 0.93797 1.01080 1.02167 1.21238 0.95068 0.98271 0.96878 1.20613 0.98561 0.95527 1.01598 1.30598 1.03666 1.18873 1.19722 1.00798 0.72471 0.73612 0.71776 1.93465 1.32355 1.87137 1.84674 1.93479 1.68487 1.49275 1.86486 1.60156 1.32570 1.68973 1.26136 1.22849 0.96381 0.96344 0.85281 1.23283 0.94438 1.02207 0.95495 1.22735 0.92859 0.96914 0.84257 0.85899 1.22515 0.91706 0.88762 0.99827 1.86362 1.39040 1.21213 1.91881 1.20723 0.93768 1.01589 1.02167 0.89217 0.85823 0.83242 0.84666 0.87659 0.89941 0.85890 0.88336 0.94719 0.88976 0.75802 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.74 13.93 21.82 0.30 -44.44 16 2 C 0.06 3.47 5.44 85.26 0.46 3.94 16 3 Si 0.92 45.19 24.41 68.60 1.67 46.87 16 4 H -0.25 -12.32 6.69 99.48 0.67 -11.65 16 5 H -0.26 -13.60 6.69 99.48 0.67 -12.94 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.47 -25.85 9.60 23.46 0.23 -25.63 16 8 H 0.08 4.27 8.06 -2.91 -0.02 4.24 16 9 C 0.05 2.69 5.18 -21.29 -0.11 2.58 16 10 C -0.17 -7.31 9.80 22.73 0.22 -7.08 16 11 C -0.10 -3.64 10.02 22.22 0.22 -3.42 16 12 C -0.14 -5.68 9.53 22.46 0.21 -5.47 16 13 C -0.64 -28.28 5.97 22.22 0.13 -28.15 16 14 S 2.72 110.17 6.27 -56.49 -0.35 109.82 16 15 O -0.99 -42.22 17.27 -128.00 -2.21 -44.43 16 16 O -0.99 -44.99 15.23 -128.00 -1.95 -46.94 16 17 N -1.04 -31.62 4.08 -527.29 -2.15 -33.77 16 18 C 0.12 2.42 8.73 83.19 0.73 3.14 16 19 C -0.11 -1.96 7.83 30.84 0.24 -1.72 16 20 C 0.14 3.28 4.64 41.71 0.19 3.48 16 21 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 22 C 0.05 1.28 6.84 71.98 0.49 1.77 16 23 O -0.58 -14.20 12.10 -148.98 -1.80 -16.01 16 24 C -0.16 -8.01 6.53 22.73 0.15 -7.86 16 25 H 0.30 14.43 8.30 -92.71 -0.77 13.67 16 26 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 27 H 0.15 4.33 8.06 -2.91 -0.02 4.31 16 28 H 0.14 4.71 7.60 -2.91 -0.02 4.68 16 29 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 1.90 6.90 -2.39 -0.02 1.89 16 33 H 0.03 1.13 6.65 -2.38 -0.02 1.12 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.39 6.68 9.12 -74.05 -0.68 6.01 16 36 H 0.10 5.23 3.82 -2.91 -0.01 5.22 16 Total: -1.00 -71.67 311.14 -2.96 -74.63 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.36 Total: 18.68 kcal Atomic # 6 Polarization: -67.58 SS G_CDS: 3.17 Total: -64.41 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -1.85 Total: -78.20 kcal Atomic # 8 Polarization: -101.42 SS G_CDS: -5.96 Total: -107.38 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.67 Total: 46.87 kcal Atomic # 16 Polarization: 110.17 SS G_CDS: -0.35 Total: 109.82 kcal Total: -71.67 -2.96 -74.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907829362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.136 kcal (2) G-P(sol) polarization free energy of solvation -71.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds