Wall clock time and date at job start Tue Mar 31 2020 03:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48498 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46902 * 59.99379 * 3 2 1 6 6 H 1.48497 * 109.46794 * 299.99861 * 3 2 1 7 7 C 1.39954 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99731 * 155.57515 * 7 2 1 9 9 C 1.41396 * 119.99938 * 335.57834 * 7 2 1 10 10 C 1.40727 * 120.24411 * 332.69652 * 9 7 2 11 11 C 1.37606 * 119.74512 * 180.02562 * 10 9 7 12 12 C 1.38651 * 120.24669 * 359.97438 * 11 10 9 13 13 C 1.38623 * 120.50098 * 359.97438 * 12 11 10 14 14 C 1.37632 * 120.24638 * 359.75354 * 13 12 11 15 15 S 1.76205 * 120.12822 * 180.25856 * 14 13 12 16 16 O 1.42089 * 106.40382 * 228.80135 * 15 14 13 17 17 O 1.42102 * 106.40042 * 1.72423 * 15 14 13 18 18 N 1.65605 * 107.21756 * 115.25899 * 15 14 13 19 19 C 1.47068 * 136.05479 * 90.00368 * 18 15 14 20 20 C 1.53494 * 87.98256 * 152.84549 * 19 18 15 21 21 C 1.47065 * 136.05593 * 269.63517 * 18 15 14 22 22 H 1.09002 * 113.46831 * 92.37994 * 21 18 15 23 23 C 1.53002 * 113.46895 * 321.93055 * 21 18 15 24 24 O 1.42897 * 109.47212 * 295.00434 * 23 21 18 25 25 H 0.96999 * 119.99929 * 174.24811 * 1 2 3 26 26 H 1.08003 * 120.12936 * 359.97438 * 10 9 7 27 27 H 1.07995 * 119.87346 * 179.97438 * 11 10 9 28 28 H 1.07993 * 119.75179 * 179.97438 * 12 11 10 29 29 H 1.07999 * 119.87297 * 180.02562 * 13 12 11 30 30 H 1.08998 * 113.46549 * 267.62566 * 19 18 15 31 31 H 1.08995 * 113.46744 * 38.06408 * 19 18 15 32 32 H 1.09001 * 114.20754 * 139.65795 * 20 19 18 33 33 H 1.08997 * 114.20482 * 272.27934 * 20 19 18 34 34 H 1.09001 * 109.46614 * 55.00529 * 23 21 18 35 35 H 1.08996 * 109.46718 * 175.00146 * 23 21 18 36 36 H 0.96701 * 114.00154 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8834 2.3965 1.2124 6 1 1.8835 2.3964 -1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0155 -1.2540 -0.3862 9 6 1.3959 -2.3815 0.5073 10 6 0.3950 -2.2879 1.4922 11 6 -0.1934 -3.4328 1.9786 12 6 0.1960 -4.6751 1.5015 13 6 1.1801 -4.7791 0.5308 14 6 1.7783 -3.6471 0.0259 15 16 3.0241 -3.7826 -1.2129 16 8 4.1098 -2.9744 -0.7802 17 8 3.1533 -5.1678 -1.5021 18 7 2.4298 -3.0718 -2.5855 19 6 2.4404 -1.7216 -3.1684 20 6 2.3201 -2.3766 -4.5514 21 6 1.6649 -3.5143 -3.7610 22 1 0.5871 -3.3985 -3.6463 23 6 2.0618 -4.9059 -4.2578 24 8 3.4102 -4.8764 -4.7301 25 1 -0.4850 -0.8358 -0.0842 26 1 0.0905 -1.3213 1.8654 27 1 -0.9614 -3.3634 2.7346 28 1 -0.2708 -5.5684 1.8892 29 1 1.4753 -5.7519 0.1662 30 1 1.5714 -1.1236 -2.8942 31 1 3.3813 -1.1918 -3.0194 32 1 1.6468 -1.8584 -5.2343 33 1 3.2751 -2.6404 -5.0056 34 1 1.9791 -5.6210 -3.4393 35 1 1.3988 -5.2046 -5.0697 36 1 3.7298 -5.7270 -5.0607 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907832214.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:17 Heat of formation + Delta-G solvation = -74.922474 kcal Electronic energy + Delta-G solvation = -23182.435545 eV Core-core repulsion = 19759.349854 eV Total energy + Delta-G solvation = -3423.085691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.23528 -37.83586 -36.32949 -35.82588 -34.84663 -34.12491 -30.21850 -29.49131 -28.54369 -27.89241 -25.37662 -22.67422 -21.81207 -21.24063 -20.64243 -18.44466 -17.93907 -17.31192 -16.51888 -16.09742 -15.53775 -15.11806 -14.80882 -14.59210 -14.13847 -13.83173 -13.41776 -13.06456 -12.85988 -12.61671 -12.34222 -12.23198 -11.97956 -11.63622 -11.45063 -11.24780 -11.19211 -11.11158 -10.97303 -10.61535 -10.48712 -10.39402 -10.05786 -9.85864 -9.69248 -9.41650 -9.19753 -8.45096 -8.18280 -7.84440 -7.49166 -4.87416 1.46023 2.23150 2.62954 3.05792 3.15605 3.30611 3.78406 3.83603 4.28523 4.38695 4.78014 4.84053 5.00377 5.20002 5.29251 5.33378 5.50811 5.63442 5.87250 5.88938 6.00831 6.05526 6.09793 6.19053 6.25852 6.51336 6.66940 6.74755 6.91727 7.10267 7.14247 7.28286 7.40299 7.57047 7.66820 7.81204 7.82263 7.98190 8.38791 8.57052 9.73280 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.014217 B = 0.008657 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.054834 B = 3233.738353 C = 4378.338758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.045 3.955 3 Si 1.061 2.939 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.112 0.888 9 C 0.168 3.832 10 C -0.213 4.213 11 C -0.056 4.056 12 C -0.265 4.265 13 C 0.012 3.988 14 C -0.789 4.789 15 S 2.732 3.268 16 O -0.970 6.970 17 O -0.991 6.991 18 N -1.020 6.020 19 C 0.136 3.864 20 C -0.144 4.144 21 C 0.154 3.846 22 H 0.098 0.902 23 C 0.059 3.941 24 O -0.563 6.563 25 H 0.302 0.698 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.174 -2.549 -8.499 8.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.180 4.180 3 Si 0.883 3.117 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.547 4.547 8 H 0.130 0.870 9 C 0.163 3.837 10 C -0.232 4.232 11 C -0.075 4.075 12 C -0.285 4.285 13 C -0.008 4.008 14 C -0.883 4.883 15 S 2.831 3.169 16 O -0.961 6.961 17 O -0.982 6.982 18 N -0.856 5.856 19 C 0.010 3.990 20 C -0.184 4.184 21 C 0.047 3.953 22 H 0.116 0.884 23 C -0.020 4.020 24 O -0.367 6.367 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.452 -0.764 -7.987 8.037 hybrid contribution -0.865 -2.219 0.557 2.446 sum -0.413 -2.983 -7.430 8.018 Atomic orbital electron populations 1.70434 1.08269 1.34646 1.26491 1.27164 0.95449 1.04576 0.90788 0.83698 0.76392 0.72990 0.78583 1.19117 1.19645 1.19710 1.21461 1.03976 0.93723 1.35544 0.87049 1.17034 0.88501 0.90372 0.87784 1.21358 1.03210 0.97272 1.01398 1.20831 0.96682 0.93263 0.96734 1.20452 1.05367 0.96252 1.06474 1.20304 0.91881 0.95686 0.92881 1.30040 1.31441 0.99802 1.27045 1.00223 0.73880 0.71481 0.71298 1.93464 1.51760 1.70036 1.80850 1.93401 1.87071 1.32784 1.84944 1.60099 1.70653 1.20594 1.34300 1.22322 1.02524 0.84757 0.89375 1.23413 1.02393 0.96357 0.96235 1.22091 0.95981 0.93510 0.83720 0.88412 1.22453 0.83512 0.97661 0.98341 1.86459 1.29001 1.36803 1.84486 0.88438 0.87163 0.88645 0.88551 0.87429 0.89868 0.90729 0.90567 0.87952 0.91411 0.92935 0.77903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.64 12.37 55.55 0.69 -17.95 16 2 C 0.04 1.05 4.95 -17.34 -0.09 0.96 16 3 Si 1.06 20.48 30.00 -169.99 -5.10 15.38 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.52 -13.03 7.31 -37.74 -0.28 -13.31 16 8 H 0.11 2.89 5.42 -52.49 -0.28 2.60 16 9 C 0.17 4.30 5.26 -106.83 -0.56 3.74 16 10 C -0.21 -5.23 7.94 -38.87 -0.31 -5.54 16 11 C -0.06 -1.26 10.02 -39.66 -0.40 -1.65 16 12 C -0.27 -5.84 10.05 -39.29 -0.39 -6.23 16 13 C 0.01 0.29 9.53 -39.66 -0.38 -0.09 16 14 C -0.79 -19.35 5.96 -38.87 -0.23 -19.58 16 15 S 2.73 63.03 5.60 -107.50 -0.60 62.42 16 16 O -0.97 -25.12 15.68 -57.17 -0.90 -26.02 16 17 O -0.99 -22.97 14.93 -57.17 -0.85 -23.83 16 18 N -1.02 -19.79 3.99 -118.03 -0.47 -20.26 16 19 C 0.14 2.32 7.80 -8.50 -0.07 2.26 16 20 C -0.14 -1.98 7.83 -26.35 -0.21 -2.19 16 21 C 0.15 2.37 4.64 -72.52 -0.34 2.04 16 22 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 23 C 0.06 0.83 6.84 37.16 0.25 1.09 16 24 O -0.56 -8.00 12.10 -35.23 -0.43 -8.43 16 25 H 0.30 7.43 6.69 -40.82 -0.27 7.15 16 26 H 0.11 2.72 6.60 -52.48 -0.35 2.37 16 27 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.11 2.29 7.33 -52.49 -0.38 1.91 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.10 1.45 6.90 -51.93 -0.36 1.09 16 34 H 0.07 1.09 6.65 -51.93 -0.35 0.74 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.37 3.65 9.12 45.56 0.42 4.06 16 LS Contribution 309.67 15.07 4.67 4.67 Total: -1.00 -31.06 309.67 -9.32 -40.38 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -3.33 Total: 12.14 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: -2.99 Total: -38.51 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.22 Total: -38.21 kcal Atomic # 8 Polarization: -56.09 SS G_CDS: -2.18 Total: -58.27 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.10 Total: 15.38 kcal Atomic # 16 Polarization: 63.03 SS G_CDS: -0.60 Total: 62.42 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.06 -9.32 -40.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907832214.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.545 kcal (2) G-P(sol) polarization free energy of solvation -31.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds