Wall clock time and date at job start Tue Mar 31 2020 03:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86796 * 120.00047 * 2 1 4 4 H 1.48502 * 109.47203 * 269.99984 * 3 2 1 5 5 H 1.48500 * 109.47233 * 29.99773 * 3 2 1 6 6 H 1.48497 * 109.47200 * 149.99966 * 3 2 1 7 7 C 1.38796 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00138 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.80994 * 99.99971 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46976 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00251 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00115 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00376 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47299 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.46886 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.46726 * 180.02562 * 16 15 14 18 18 C 1.35462 * 116.99536 * 180.02562 * 17 16 15 19 19 N 1.32315 * 119.19856 * 359.72800 * 18 17 16 20 20 C 1.32302 * 120.76120 * 179.75945 * 19 18 17 21 21 C 1.38590 * 119.17313 * 0.50889 * 20 19 18 22 22 C 1.38597 * 118.52185 * 359.74817 * 21 20 19 23 23 N 1.32296 * 119.17346 * 0.02562 * 22 21 20 24 24 H 0.96997 * 119.99560 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47717 * 59.99897 * 10 9 7 26 26 H 1.09002 * 109.46947 * 299.99638 * 10 9 7 27 27 H 0.97003 * 119.99640 * 359.97438 * 13 11 10 28 28 H 1.09001 * 109.46596 * 59.99898 * 14 13 11 29 29 H 1.09002 * 109.47129 * 300.00253 * 14 13 11 30 30 H 1.09001 * 109.46652 * 60.00269 * 15 14 13 31 31 H 1.08992 * 109.47514 * 300.00358 * 15 14 13 32 32 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 33 33 H 1.09001 * 109.47194 * 60.00677 * 16 15 14 34 34 H 1.07990 * 120.41485 * 180.23500 * 20 19 18 35 35 H 1.08003 * 120.74042 * 179.77222 * 21 20 19 36 36 H 1.07999 * 120.41303 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0029 11 6 1.9874 -5.3027 0.0036 12 8 0.7911 -5.5023 0.0038 13 7 2.8441 -6.3431 0.0039 14 6 2.3304 -7.7151 0.0050 15 6 3.5025 -8.6986 0.0045 16 6 2.9659 -10.1314 0.0064 17 8 4.0606 -11.0499 0.0065 18 6 3.7558 -12.3698 0.0075 19 7 2.4852 -12.7388 0.0139 20 6 2.1525 -14.0193 0.0103 21 6 3.1538 -14.9775 0.0105 22 6 4.4738 -14.5553 0.0092 23 7 4.7361 -13.2586 0.0082 24 1 -0.4849 0.8401 -0.0004 25 1 3.1246 -3.7306 0.8927 26 1 3.1244 -3.7321 -0.8872 27 1 3.8009 -6.1835 0.0033 28 1 1.7214 -7.8757 -0.8846 29 1 1.7222 -7.8746 0.8954 30 1 4.1118 -8.5380 0.8939 31 1 4.1103 -8.5390 -0.8860 32 1 2.3582 -10.2907 0.8972 33 1 2.3563 -10.2922 -0.8828 34 1 1.1136 -14.3142 0.0117 35 1 2.9108 -16.0299 0.0113 36 1 5.2783 -15.2758 0.0089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911974089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:49 Heat of formation + Delta-G solvation = -24.376265 kcal Electronic energy + Delta-G solvation = -19563.946350 eV Core-core repulsion = 16175.345258 eV Total energy + Delta-G solvation = -3388.601092 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.61440 -39.29881 -38.78988 -35.45554 -34.27318 -32.56130 -32.41996 -31.42358 -29.23119 -26.13976 -25.45161 -24.94744 -23.88072 -21.96136 -20.36825 -19.26427 -18.11914 -17.79957 -17.10576 -16.53656 -16.25786 -15.86832 -15.69679 -15.19899 -14.79940 -14.76389 -14.47314 -13.97397 -13.76722 -13.75542 -13.15116 -12.62844 -12.34530 -12.30615 -11.81794 -11.70711 -11.58686 -11.42852 -11.06591 -11.04603 -11.01926 -10.75881 -9.81508 -9.67460 -9.49648 -9.43851 -9.06754 -8.92706 -8.23507 -6.49732 -6.21246 -3.91893 0.52516 0.56996 2.04002 3.04142 3.08374 3.22969 3.28510 3.30578 3.32684 3.55623 3.70863 4.10337 4.18645 4.20900 4.54968 4.57593 4.61847 4.64252 4.79564 5.10019 5.13882 5.17740 5.18250 5.24279 5.40514 5.59453 5.68671 5.75709 5.89560 5.90102 6.14305 6.26891 6.56085 6.74112 7.60101 7.60842 7.67701 8.35753 8.59052 9.24100 10.86192 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.066928 B = 0.001847 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.261330 B =15157.262080 C =15544.472065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.739 5.739 14 C 0.127 3.873 15 C -0.132 4.132 16 C 0.080 3.920 17 O -0.287 6.287 18 C 0.504 3.496 19 N -0.567 5.567 20 C 0.188 3.812 21 C -0.273 4.273 22 C 0.188 3.812 23 N -0.527 5.527 24 H 0.268 0.732 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.400 0.600 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.173 0.827 35 H 0.152 0.848 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.902 -29.891 0.006 31.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.394 5.394 14 C 0.002 3.998 15 C -0.170 4.170 16 C 0.003 3.997 17 O -0.188 6.188 18 C 0.202 3.798 19 N -0.297 5.297 20 C 0.023 3.977 21 C -0.296 4.296 22 C 0.022 3.978 23 N -0.253 5.253 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.234 0.766 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.190 0.810 35 H 0.169 0.831 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 7.182 -28.876 0.018 29.756 hybrid contribution 2.033 0.349 -0.010 2.063 sum 9.215 -28.527 0.008 29.978 Atomic orbital electron populations 1.70023 1.05950 1.27451 1.46867 1.24996 0.95035 0.99039 0.94531 0.86160 0.79402 0.81540 0.78344 1.20272 1.20750 1.19700 1.22873 0.94930 0.91644 1.58950 0.90895 1.85398 1.04928 0.96342 1.96725 1.23532 1.06604 0.95253 1.05022 1.20320 0.86486 0.86265 0.75086 1.90706 1.15367 1.85598 1.47418 1.45939 1.10113 1.05206 1.78147 1.21022 0.95068 0.80699 1.02977 1.21743 0.99125 0.91429 1.04692 1.22655 0.87069 0.86272 1.03656 1.86055 1.35986 1.10300 1.86472 1.20717 0.84514 0.86424 0.88192 1.68147 1.19622 1.21305 1.20610 1.23039 1.00859 0.86437 0.87398 1.22770 0.95109 1.02818 1.08881 1.23144 0.96452 0.90445 0.87780 1.67615 1.36022 1.02433 1.19235 0.92185 0.89128 0.89138 0.76636 0.91157 0.91149 0.89894 0.89886 0.90576 0.90581 0.80979 0.83069 0.80623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 11 C 0.53 9.92 7.85 -10.98 -0.09 9.83 16 12 O -0.52 -11.77 15.86 5.56 0.09 -11.68 16 13 N -0.74 -9.70 5.56 -60.29 -0.33 -10.03 16 14 C 0.13 1.42 5.67 -4.04 -0.02 1.39 16 15 C -0.13 -1.12 5.70 -26.73 -0.15 -1.27 16 16 C 0.08 0.72 5.29 37.16 0.20 0.92 16 17 O -0.29 -3.22 10.20 -18.08 -0.18 -3.40 16 18 C 0.50 5.52 8.49 -91.25 -0.77 4.75 16 19 N -0.57 -5.40 9.23 -14.73 -0.14 -5.54 16 20 C 0.19 1.14 11.30 -17.22 -0.19 0.94 16 21 C -0.27 -1.22 10.16 -39.32 -0.40 -1.62 16 22 C 0.19 1.14 11.30 -17.22 -0.19 0.94 16 23 N -0.53 -5.39 10.46 -14.73 -0.15 -5.55 16 24 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 26 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 27 H 0.40 4.03 8.47 -40.82 -0.35 3.69 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 33 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.17 0.47 8.06 -52.49 -0.42 0.05 16 35 H 0.15 0.17 8.06 -52.48 -0.42 -0.25 16 36 H 0.18 0.41 8.06 -52.49 -0.42 -0.01 16 LS Contribution 336.68 15.07 5.07 5.07 Total: -1.00 -37.40 336.68 -7.89 -45.30 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -4.54 Total: -1.24 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.21 Total: 0.00 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.11 Total: -46.63 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.10 Total: -15.08 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.40 -7.89 -45.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911974089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.919 kcal (2) G-P(sol) polarization free energy of solvation -37.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds