Wall clock time and date at job start Tue Mar 31 2020 03:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86796 * 120.00047 * 2 1 4 4 H 1.48502 * 109.47203 * 269.99984 * 3 2 1 5 5 H 1.48500 * 109.47233 * 29.99773 * 3 2 1 6 6 H 1.48497 * 109.47200 * 149.99966 * 3 2 1 7 7 C 1.38796 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00138 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.80994 * 99.99971 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46976 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00251 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00115 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00376 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47299 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.46886 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.46726 * 180.02562 * 16 15 14 18 18 C 1.35462 * 116.99536 * 180.02562 * 17 16 15 19 19 N 1.32315 * 119.19856 * 359.72800 * 18 17 16 20 20 C 1.32302 * 120.76120 * 179.75945 * 19 18 17 21 21 C 1.38590 * 119.17313 * 0.50889 * 20 19 18 22 22 C 1.38597 * 118.52185 * 359.74817 * 21 20 19 23 23 N 1.32296 * 119.17346 * 0.02562 * 22 21 20 24 24 H 0.96997 * 119.99560 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47717 * 59.99897 * 10 9 7 26 26 H 1.09002 * 109.46947 * 299.99638 * 10 9 7 27 27 H 0.97003 * 119.99640 * 359.97438 * 13 11 10 28 28 H 1.09001 * 109.46596 * 59.99898 * 14 13 11 29 29 H 1.09002 * 109.47129 * 300.00253 * 14 13 11 30 30 H 1.09001 * 109.46652 * 60.00269 * 15 14 13 31 31 H 1.08992 * 109.47514 * 300.00358 * 15 14 13 32 32 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 33 33 H 1.09001 * 109.47194 * 60.00677 * 16 15 14 34 34 H 1.07990 * 120.41485 * 180.23500 * 20 19 18 35 35 H 1.08003 * 120.74042 * 179.77222 * 21 20 19 36 36 H 1.07999 * 120.41303 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0029 11 6 1.9874 -5.3027 0.0036 12 8 0.7911 -5.5023 0.0038 13 7 2.8441 -6.3431 0.0039 14 6 2.3304 -7.7151 0.0050 15 6 3.5025 -8.6986 0.0045 16 6 2.9659 -10.1314 0.0064 17 8 4.0606 -11.0499 0.0065 18 6 3.7558 -12.3698 0.0075 19 7 2.4852 -12.7388 0.0139 20 6 2.1525 -14.0193 0.0103 21 6 3.1538 -14.9775 0.0105 22 6 4.4738 -14.5553 0.0092 23 7 4.7361 -13.2586 0.0082 24 1 -0.4849 0.8401 -0.0004 25 1 3.1246 -3.7306 0.8927 26 1 3.1244 -3.7321 -0.8872 27 1 3.8009 -6.1835 0.0033 28 1 1.7214 -7.8757 -0.8846 29 1 1.7222 -7.8746 0.8954 30 1 4.1118 -8.5380 0.8939 31 1 4.1103 -8.5390 -0.8860 32 1 2.3582 -10.2907 0.8972 33 1 2.3563 -10.2922 -0.8828 34 1 1.1136 -14.3142 0.0117 35 1 2.9108 -16.0299 0.0113 36 1 5.2783 -15.2758 0.0089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911974089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:49 Heat of formation + Delta-G solvation = -54.913546 kcal Electronic energy + Delta-G solvation = -19565.270546 eV Core-core repulsion = 16175.345258 eV Total energy + Delta-G solvation = -3389.925288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.17362 -40.65239 -39.54178 -36.58754 -34.83006 -34.58211 -33.52510 -32.10468 -30.64874 -27.72397 -26.88897 -25.51512 -24.52478 -22.77276 -21.76755 -19.93343 -19.78789 -18.69304 -17.82268 -17.76010 -17.28506 -16.87690 -16.77332 -16.75771 -15.91752 -15.81959 -15.65439 -15.05319 -14.71906 -14.66066 -14.40660 -14.30609 -13.60787 -13.23031 -13.16237 -12.90059 -12.78794 -12.60015 -12.56383 -12.08397 -12.04030 -11.75266 -11.73004 -11.14021 -11.00675 -10.27719 -10.23859 -10.16348 -10.02418 -8.66651 -8.34486 -6.12673 0.00941 0.09973 1.23265 1.38772 1.42904 1.50530 1.59488 1.60230 2.26781 2.31997 2.77082 2.99684 3.05616 3.31765 3.58679 3.77853 3.79123 3.83061 4.02344 4.08734 4.24007 4.28815 4.33684 4.37513 4.46676 4.51961 4.60463 4.85402 4.97303 5.00850 5.27574 5.38260 5.42347 5.70595 6.18364 6.20189 6.47984 7.04075 7.06854 7.22022 8.74757 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.066928 B = 0.001847 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.261330 B =15157.262080 C =15544.472065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.713 5.713 14 C 0.128 3.872 15 C -0.116 4.116 16 C 0.084 3.916 17 O -0.306 6.306 18 C 0.476 3.524 19 N -0.589 5.589 20 C 0.172 3.828 21 C -0.252 4.252 22 C 0.176 3.824 23 N -0.561 5.561 24 H 0.271 0.729 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.418 0.582 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.204 0.796 35 H 0.192 0.808 36 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.948 -31.456 0.007 33.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.320 3.680 12 O -0.444 6.444 13 N -0.367 5.367 14 C 0.004 3.996 15 C -0.153 4.153 16 C 0.008 3.992 17 O -0.208 6.208 18 C 0.173 3.827 19 N -0.319 5.319 20 C 0.008 3.992 21 C -0.273 4.273 22 C 0.011 3.989 23 N -0.288 5.288 24 H 0.080 0.920 25 H 0.130 0.870 26 H 0.130 0.870 27 H 0.256 0.744 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.220 0.780 35 H 0.210 0.790 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 9.280 -30.508 0.018 31.888 hybrid contribution 1.423 0.566 -0.010 1.531 sum 10.703 -29.942 0.007 31.797 Atomic orbital electron populations 1.70188 1.07972 1.28606 1.48005 1.26136 0.95977 1.03338 0.93733 0.84941 0.78184 0.75988 0.78787 1.19311 1.20303 1.18207 1.23216 0.95391 0.91989 1.58874 0.89839 1.85577 1.10615 0.99282 1.97064 1.23377 1.03572 0.94192 1.06985 1.20067 0.86185 0.86687 0.75067 1.90696 1.17433 1.86112 1.50133 1.45663 1.10522 1.04872 1.75659 1.21098 0.96145 0.79840 1.02558 1.21560 0.97869 0.90269 1.05633 1.22576 0.86849 0.86296 1.03473 1.85979 1.36682 1.11066 1.87063 1.20880 0.85365 0.86357 0.90109 1.68143 1.19080 1.23281 1.21399 1.23730 1.02898 0.85700 0.86847 1.23206 0.93923 1.04470 1.05729 1.23863 0.98465 0.89581 0.86949 1.67604 1.36634 1.04073 1.20443 0.91995 0.87043 0.87031 0.74423 0.91662 0.91658 0.88929 0.88915 0.90810 0.90802 0.77977 0.79033 0.77290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.21 13.22 21.65 0.29 -55.93 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.55 -31.34 9.50 67.95 0.65 -30.69 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 10 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 11 C 0.53 19.62 7.85 87.66 0.69 20.30 16 12 O -0.57 -26.26 15.86 -3.03 -0.05 -26.31 16 13 N -0.71 -17.54 5.56 -463.06 -2.57 -20.11 16 14 C 0.13 2.73 5.67 86.38 0.49 3.22 16 15 C -0.12 -1.81 5.70 30.59 0.17 -1.63 16 16 C 0.08 1.52 5.29 71.98 0.38 1.90 16 17 O -0.31 -6.93 10.20 -87.60 -0.89 -7.82 16 18 C 0.48 10.48 8.49 180.57 1.53 12.01 16 19 N -0.59 -10.99 9.23 -313.48 -2.89 -13.88 16 20 C 0.17 1.77 11.30 84.71 0.96 2.73 16 21 C -0.25 -1.53 10.16 22.44 0.23 -1.30 16 22 C 0.18 1.78 11.30 84.71 0.96 2.74 16 23 N -0.56 -11.23 10.46 -313.47 -3.28 -14.51 16 24 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 26 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 27 H 0.42 7.29 8.47 -92.71 -0.79 6.51 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 33 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 34 H 0.20 0.59 8.06 -2.92 -0.02 0.57 16 35 H 0.19 -0.46 8.06 -2.91 -0.02 -0.49 16 36 H 0.21 0.39 8.06 -2.91 -0.02 0.37 16 Total: -1.00 -84.91 336.68 -1.26 -86.17 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.32 Total: 10.53 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 6.96 Total: 5.79 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -8.46 Total: -104.43 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.94 Total: -34.14 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -84.91 -1.26 -86.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911974089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.252 kcal (2) G-P(sol) polarization free energy of solvation -84.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds