Wall clock time and date at job start Tue Mar 31 2020 03:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00260 * 2 1 4 4 H 1.48500 * 109.46870 * 239.99864 * 3 2 1 5 5 H 1.48496 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47150 * 120.00444 * 3 2 1 7 7 C 1.38817 * 119.99496 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99762 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99923 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64849 * 0.02562 * 9 7 2 11 11 C 1.54323 * 107.26663 * 178.89399 * 10 9 7 12 12 H 1.09006 * 110.87061 * 219.36988 * 11 10 9 13 13 O 1.42904 * 110.72034 * 96.17262 * 11 10 9 14 14 C 1.55157 * 102.94549 * 337.80799 * 11 10 9 15 15 H 1.09002 * 110.99944 * 277.38624 * 14 11 10 16 16 C 1.52998 * 111.00436 * 153.57991 * 14 11 10 17 17 N 1.46494 * 109.47267 * 174.99895 * 16 14 11 18 18 C 1.34773 * 120.00348 * 179.97438 * 17 16 14 19 19 O 1.21631 * 120.00085 * 0.02562 * 18 17 16 20 20 C 1.47272 * 120.00323 * 179.97438 * 18 17 16 21 21 C 1.35204 * 123.14329 * 180.02562 * 20 18 17 22 22 S 1.70941 * 108.82878 * 179.73826 * 21 20 18 23 23 C 1.70773 * 91.12742 * 0.34059 * 22 21 20 24 24 N 1.28656 * 110.55904 * 359.65174 * 23 22 21 25 25 C 1.47420 * 125.64556 * 179.97438 * 9 7 2 26 26 H 0.97006 * 119.98999 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.88152 * 59.47881 * 10 9 7 28 28 H 1.09005 * 110.00915 * 298.38283 * 10 9 7 29 29 H 0.96705 * 114.00008 * 66.47274 * 13 11 10 30 30 H 1.09000 * 109.47753 * 54.99320 * 16 14 11 31 31 H 1.09001 * 109.46647 * 294.99826 * 16 14 11 32 32 H 0.97001 * 119.99701 * 359.97438 * 17 16 14 33 33 H 1.08005 * 125.58191 * 0.02562 * 21 20 18 34 34 H 1.08002 * 124.72320 * 179.97438 * 23 22 21 35 35 H 1.08995 * 110.37073 * 85.33475 * 25 9 7 36 36 H 1.09003 * 110.37037 * 323.00973 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1377 -2.5327 -0.0005 11 6 -0.4487 -4.0440 -0.0290 12 1 -1.2994 -4.2533 -0.6776 13 8 -0.6888 -4.5357 1.2911 14 6 0.8516 -4.6554 -0.6145 15 1 0.8561 -4.5950 -1.7028 16 6 1.0365 -6.1007 -0.1477 17 7 2.2054 -6.6826 -0.8119 18 6 2.5637 -7.9556 -0.5523 19 8 1.9165 -8.6215 0.2332 20 6 3.7384 -8.5409 -1.2206 21 6 4.1540 -9.8098 -1.0079 22 16 5.5358 -10.1062 -1.9696 23 6 5.4851 -8.5168 -2.5921 24 7 4.4928 -7.8676 -2.0932 25 6 1.9332 -3.7312 -0.0016 26 1 -0.4849 0.8402 0.0004 27 1 -0.5578 -2.0511 -0.8836 28 1 -0.5568 -2.0848 0.9006 29 1 -1.4903 -4.1838 1.7022 30 1 0.1488 -6.6806 -0.4002 31 1 1.1863 -6.1174 0.9319 32 1 2.7213 -6.1517 -1.4387 33 1 3.6864 -10.5211 -0.3432 34 1 6.1853 -8.1144 -3.3092 35 1 2.1661 -4.0430 1.0165 36 1 2.8327 -3.7401 -0.6171 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957915046.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:16 Heat of formation + Delta-G solvation = -38.349867 kcal Electronic energy + Delta-G solvation = -21389.801157 eV Core-core repulsion = 18000.594125 eV Total energy + Delta-G solvation = -3389.207033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.52308 -40.18818 -39.39913 -36.42797 -36.13304 -33.95904 -31.85892 -31.28356 -29.52422 -27.66874 -26.63558 -25.13259 -23.38626 -22.15410 -21.44566 -20.61564 -19.84370 -19.10103 -18.26875 -17.45625 -17.09371 -16.80525 -16.63696 -16.08062 -15.82506 -15.45314 -15.30125 -14.97250 -14.61304 -14.38433 -14.30731 -14.22262 -13.55947 -13.14575 -13.09620 -12.92841 -12.64915 -12.40478 -12.13538 -11.94408 -11.79617 -11.65782 -11.22362 -10.83662 -10.79627 -10.72935 -10.71779 -10.25675 -9.87657 -8.92720 -7.86946 -5.22482 -0.45494 0.34787 0.65491 0.94596 1.45460 1.48821 1.55031 2.16052 2.29280 2.48314 3.13647 3.26296 3.34907 3.54066 3.86675 3.89966 3.97665 3.99939 4.17059 4.38020 4.40670 4.55905 4.60943 4.80814 4.84165 4.90967 4.96811 5.25821 5.36120 5.40045 5.51453 5.68431 6.16278 6.26905 6.59477 6.92894 7.07277 7.08282 7.74104 8.38906 9.23069 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.021422 B = 0.003310 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.727230 B = 8457.955697 C = 9562.629909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.064 4.064 3 Si 0.980 3.020 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.081 0.919 9 N -0.624 5.624 10 C 0.160 3.840 11 C 0.097 3.903 12 H 0.090 0.910 13 O -0.571 6.571 14 C -0.093 4.093 15 H 0.106 0.894 16 C 0.155 3.845 17 N -0.703 5.703 18 C 0.586 3.414 19 O -0.575 6.575 20 C -0.022 4.022 21 C -0.238 4.238 22 S 0.302 5.698 23 C -0.007 4.007 24 N -0.474 5.474 25 C 0.144 3.856 26 H 0.248 0.752 27 H 0.024 0.976 28 H 0.016 0.984 29 H 0.391 0.609 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.415 0.585 33 H 0.192 0.808 34 H 0.239 0.761 35 H 0.011 0.989 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.449 -21.009 -7.097 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.808 3.192 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.351 5.351 10 C 0.035 3.965 11 C 0.037 3.963 12 H 0.107 0.893 13 O -0.378 6.378 14 C -0.112 4.112 15 H 0.124 0.876 16 C 0.032 3.968 17 N -0.353 5.353 18 C 0.371 3.629 19 O -0.455 6.455 20 C -0.158 4.158 21 C -0.381 4.381 22 S 0.558 5.442 23 C -0.305 4.305 24 N -0.189 5.189 25 C 0.019 3.981 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.034 0.966 29 H 0.241 0.759 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.251 0.749 33 H 0.209 0.791 34 H 0.255 0.745 35 H 0.029 0.971 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.050 -21.811 -7.000 25.015 hybrid contribution -0.987 2.366 0.577 2.628 sum 9.062 -19.445 -6.423 22.394 Atomic orbital electron populations 1.70144 1.06197 1.25427 1.58170 1.25643 0.96706 1.00964 1.02418 0.85127 0.77163 0.78670 0.78218 1.20029 1.21868 1.20619 1.19437 0.91024 0.83746 1.43329 0.90156 1.44683 1.02391 1.00945 1.87033 1.21684 0.84364 0.91818 0.98643 1.22962 0.96617 0.92418 0.84318 0.89275 1.86387 1.50198 1.71099 1.30163 1.22558 0.95159 0.92843 1.00666 0.87599 1.20945 0.87561 0.91527 0.96808 1.45881 1.30751 1.12846 1.45860 1.17496 0.82981 0.81700 0.80760 1.90778 1.55307 1.62005 1.37438 1.20285 1.00119 0.93053 1.02299 1.26930 1.03866 1.00482 1.06851 1.82595 1.18885 1.12506 1.30252 1.29124 0.99990 0.96462 1.04954 1.66949 1.05907 1.36357 1.09700 1.21653 0.95132 0.84548 0.96783 0.94302 0.95741 0.96632 0.75903 0.90768 0.92308 0.74868 0.79113 0.74465 0.97112 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.93 10.31 21.65 0.22 -56.71 16 2 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16 3 Si 0.98 46.02 29.55 68.60 2.03 48.05 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.25 -14.08 10.28 84.03 0.86 -13.22 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.62 -32.75 3.39 -691.99 -2.35 -35.10 16 10 C 0.16 7.84 5.14 86.73 0.45 8.28 16 11 C 0.10 3.55 4.09 31.78 0.13 3.68 16 12 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 13 O -0.57 -20.01 12.24 -148.98 -1.82 -21.83 16 14 C -0.09 -3.22 2.98 -9.40 -0.03 -3.25 16 15 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 16 C 0.16 5.04 4.60 86.38 0.40 5.43 16 17 N -0.70 -21.17 5.50 -466.53 -2.56 -23.73 16 18 C 0.59 18.42 7.80 86.62 0.68 19.09 16 19 O -0.57 -21.32 16.71 -4.13 -0.07 -21.39 16 20 C -0.02 -0.56 6.70 40.56 0.27 -0.29 16 21 C -0.24 -4.43 10.62 67.12 0.71 -3.72 16 22 S 0.30 2.86 22.97 -56.49 -1.30 1.56 16 23 C -0.01 -0.08 12.17 130.71 1.59 1.51 16 24 N -0.47 -10.39 10.12 -193.02 -1.95 -12.35 16 25 C 0.14 6.16 6.64 86.86 0.58 6.74 16 26 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 27 H 0.02 1.32 7.38 -2.39 -0.02 1.30 16 28 H 0.02 0.85 7.44 -2.38 -0.02 0.84 16 29 H 0.39 10.76 9.12 -74.05 -0.68 10.08 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.06 2.19 7.55 -2.39 -0.02 2.17 16 32 H 0.41 11.60 7.99 -92.71 -0.74 10.86 16 33 H 0.19 3.33 8.03 -2.91 -0.02 3.30 16 34 H 0.24 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.01 0.50 7.91 -2.39 -0.02 0.49 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -76.81 320.79 -1.99 -78.80 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -0.29 Total: 21.66 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: 6.10 Total: 21.03 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -6.64 Total: -127.88 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -1.89 Total: -43.22 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.30 Total: 1.56 kcal Total: -76.81 -1.99 -78.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957915046.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.453 kcal (2) G-P(sol) polarization free energy of solvation -76.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds